Gvermi6985.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6985.t1
Unique NameGvermi6985.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length104
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:834056..834461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3983.cassava4.1_019135m
PFAMsCupin_3
Max annot lvl35493|Streptophyta
KEGG koko:K06995
Evalue4.12e-31
EggNOG OGsCOG3450@1|root,2S172@2759|Eukaryota,37VCB@33090|Viridiplantae,3GJPA@35493|Streptophyta,4JQ5Y@91835|fabids
DescriptionProtein of unknown function (DUF861)
COG categoryS
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6985Gvermi6985Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 834056..834461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6985.t1Gvermi6985.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 834056..834461 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6985.t1.start1Gvermi6985.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 834056..834058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6985.t1.CDS1Gvermi6985.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 834056..834263 +
Gvermi6985.t1.CDS2Gvermi6985.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 834358..834461 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6985.t1.exon1Gvermi6985.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 834056..834263 +
Gvermi6985.t1.exon2Gvermi6985.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 834358..834461 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6985.t1.intron1Gvermi6985.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 834264..834357 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6985.t1.stop1Gvermi6985.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 834459..834461 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6985.t1 ID=Gvermi6985.t1|Name=Gvermi6985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=104bp
MSATVVEKGAGMRLIKSADEKTIEKLGCRSWSTWGCEPSTFPWTYSDDEV
CLVLKGDFTVTPDDGSEKMDVKAGDIAYFPKSMSCTWEVREAIHKHFTFG
MKL*
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spliced messenger RNA

>Gvermi6985.t1 ID=Gvermi6985.t1|Name=Gvermi6985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=312bp|location=Sequence derived from alignment at ScGOVlb_24229:834056..834461+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCGACAGTTGTTGAAAAAGGCGCTGGCATGCGTCTTATCAAGAG
CGCGGACGAGAAAACAATCGAAAAACTCGGGTGCCGTTCATGGAGTACAT
GGGGATGCGAGCCGAGCACGTTTCCATGGACGTACTCGGATGACGAAGTC
TGTCTGGTGTTGAAGGGAGACTTTACTGTCACACCTGACGATGGGAGTGA
GAAAATGGATGTGAAAGCAGGTGACATCGCATATTTTCCTAAGAGTATGT
CATGTACTTGGGAAGTTCGTGAAGCTATTCACAAGCATTTCACATTTGGA
ATGAAACTGTAG
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protein sequence of Gvermi6985.t1

>Gvermi6985.t1 ID=Gvermi6985.t1|Name=Gvermi6985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=104bp
MSATVVEKGAGMRLIKSADEKTIEKLGCRSWSTWGCEPSTFPWTYSDDEV
CLVLKGDFTVTPDDGSEKMDVKAGDIAYFPKSMSCTWEVREAIHKHFTFG
MKL*
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mRNA from alignment at ScGOVlb_24229:834056..834461+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6985.t1 ID=Gvermi6985.t1|Name=Gvermi6985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=406bp|location=Sequence derived from alignment at ScGOVlb_24229:834056..834461+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCGACAGTTGTTGAAAAAGGCGCTGGCATGCGTCTTATCAAGAG
CGCGGACGAGAAAACAATCGAAAAACTCGGGTGCCGTTCATGGAGTACAT
GGGGATGCGAGCCGAGCACGTTTCCATGGACGTACTCGGATGACGAAGTC
TGTCTGGTGTTGAAGGGAGACTTTACTGTCACACCTGACGATGGGAGTGA
GAAAATGGGTACGTCCGTAACTCTTGGAGGAACATCAGTTTCTTCTATGC
GCAGTCGCGCGTAGCAAAATGTTTCTGACTTTTATACTCGTGCACATGAC
AGATGTGAAAGCAGGTGACATCGCATATTTTCCTAAGAGTATGTCATGTA
CTTGGGAAGTTCGTGAAGCTATTCACAAGCATTTCACATTTGGAATGAAA
CTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:834056..834461+

>Gvermi6985.t1 ID=Gvermi6985.t1|Name=Gvermi6985.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=312bp|location=Sequence derived from alignment at ScGOVlb_24229:834056..834461+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCGACAGTTGTTGAAAAAGGCGCTGGCATGCGTCTTATCAAGAG
CGCGGACGAGAAAACAATCGAAAAACTCGGGTGCCGTTCATGGAGTACAT
GGGGATGCGAGCCGAGCACGTTTCCATGGACGTACTCGGATGACGAAGTC
TGTCTGGTGTTGAAGGGAGACTTTACTGTCACACCTGACGATGGGAGTGA
GAAAATGGATGTGAAAGCAGGTGACATCGCATATTTTCCTAAGAGTATGT
CATGTACTTGGGAAGTTCGTGAAGCTATTCACAAGCATTTCACATTTGGA
ATGAAACTGTAG
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