Gvermi6948.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6948.t1
Unique NameGvermi6948.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:721644..722499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707306.1
Preferred nameUBE2G1
PFAMsUQ_con
Max annot lvl2759|Eukaryota
KEGG koko:K02207,ko:K02331,ko:K10575
KEGG Pathwayko04120,ko04141,ko05012,ko05168,map04120,map04141,map05012,map05168
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031935,GO:0031936,GO:0031938,GO:0031939,GO:0032446,GO:0033043,GO:0033044,GO:0036211,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045815,GO:0045893,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051603,GO:0060255,GO:0060968,GO:0060969,GO:0061186,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070534,GO:0070647,GO:0070936,GO:0071704,GO:0080090,GO:0090054,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:1905268,GO:2000112,GO:2001141,GO:2001251
Evalue4.04e-92
EggNOG OGsCOG5078@1|root,KOG0425@2759|Eukaryota
EC2.3.2.23,2.7.7.7
Descriptionprotein polyubiquitination
COG categoryO
BRITEko00000,ko00001,ko01000,ko03036,ko03400,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6948Gvermi6948Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 721644..722499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6948.t1Gvermi6948.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 721644..722499 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6948.t1.start1Gvermi6948.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 721644..721646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6948.t1.CDS1Gvermi6948.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 721644..721692 +
Gvermi6948.t1.CDS2Gvermi6948.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 721839..721941 +
Gvermi6948.t1.CDS3Gvermi6948.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 722050..722147 +
Gvermi6948.t1.CDS4Gvermi6948.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 722243..722499 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6948.t1.exon1Gvermi6948.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 721644..721692 +
Gvermi6948.t1.exon2Gvermi6948.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 721839..721941 +
Gvermi6948.t1.exon3Gvermi6948.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 722050..722147 +
Gvermi6948.t1.exon4Gvermi6948.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 722243..722499 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6948.t1.intron1Gvermi6948.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 721693..721838 +
Gvermi6948.t1.intron2Gvermi6948.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 721942..722049 +
Gvermi6948.t1.intron3Gvermi6948.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 722148..722242 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6948.t1.stop1Gvermi6948.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 722497..722499 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6948.t1 ID=Gvermi6948.t1|Name=Gvermi6948.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=169bp
MASNSQAAMLLMRQLKELNKNIDSGFSAGLVDDANPFEWQIILTGPPDTW
YEGGLFKAKLSFPPDYPYMPPTMRFISDMWHPNIYKDGRVCISILHAPGS
DPNQYENASERWLPVHTVESILVSVISMLSCPNDESAANLDAAKEWRETP
EIFKKKVRETVRRAQEDL*
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spliced messenger RNA

>Gvermi6948.t1 ID=Gvermi6948.t1|Name=Gvermi6948.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=507bp|location=Sequence derived from alignment at ScGOVlb_24229:721644..722499+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCAAATAGCCAAGCGGCCATGCTGCTCATGCGGCAACTCAAAGA
ATTGAACAAGAACATCGACTCTGGTTTCTCCGCGGGGCTTGTAGACGATG
CTAATCCCTTTGAGTGGCAAATAATTCTCACCGGACCTCCAGACACTTGG
TACGAGGGGGGTCTGTTCAAGGCAAAGCTCTCTTTTCCTCCGGACTACCC
GTACATGCCACCAACAATGCGTTTCATATCCGACATGTGGCACCCGAACA
TTTACAAGGACGGCAGAGTCTGTATCTCCATATTGCACGCGCCTGGTTCC
GACCCTAATCAGTACGAAAATGCGTCTGAGAGATGGCTTCCGGTGCACAC
TGTCGAGTCCATTCTCGTGTCCGTCATTTCCATGCTCTCTTGCCCGAACG
ACGAAAGCGCCGCTAATCTTGATGCCGCCAAAGAGTGGAGAGAGACGCCA
GAAATATTCAAGAAGAAAGTGCGCGAAACAGTAAGACGTGCTCAAGAGGA
TCTGTGA
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protein sequence of Gvermi6948.t1

>Gvermi6948.t1 ID=Gvermi6948.t1|Name=Gvermi6948.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=169bp
MASNSQAAMLLMRQLKELNKNIDSGFSAGLVDDANPFEWQIILTGPPDTW
YEGGLFKAKLSFPPDYPYMPPTMRFISDMWHPNIYKDGRVCISILHAPGS
DPNQYENASERWLPVHTVESILVSVISMLSCPNDESAANLDAAKEWRETP
EIFKKKVRETVRRAQEDL*
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mRNA from alignment at ScGOVlb_24229:721644..722499+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6948.t1 ID=Gvermi6948.t1|Name=Gvermi6948.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=856bp|location=Sequence derived from alignment at ScGOVlb_24229:721644..722499+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCAAATAGCCAAGCGGCCATGCTGCTCATGCGGCAACTCAAAGG
TACTGCATCCCCTTTCTTAGTCTTTGCAGCACCGTCGCCCGAACGCGAGT
ATCTTCATGGTCTCCATTGAAACTAACTCCTCCATCTATTTGACGTACCA
ATGCTACCGTTTGATACAACTGTCATCGTCATCTTCTTTCTCTAGAATTG
AACAAGAACATCGACTCTGGTTTCTCCGCGGGGCTTGTAGACGATGCTAA
TCCCTTTGAGTGGCAAATAATTCTCACCGGACCTCCAGACACTTGGTAGT
AAGTTTTCTAAACATCACACACCAAACCCCTTGCGATGCCGTCGTTGTCA
ACCACCGCCGCATCGTTGCTAACGTCAAATCACCTAAATCACCTCGCATA
AAAAAGCGAGGGGGGTCTGTTCAAGGCAAAGCTCTCTTTTCCTCCGGACT
ACCCGTACATGCCACCAACAATGCGTTTCATATCCGACATGTGGCACCCG
AACAGTAAGTCCTAATTCCCCGCATCGTGCCGCAGACATCGCGCTTCTTT
TGCTGACGCCAAATCTCTTTCGTCCACTCACTTCCCACCCCACCAATAGT
TTACAAGGACGGCAGAGTCTGTATCTCCATATTGCACGCGCCTGGTTCCG
ACCCTAATCAGTACGAAAATGCGTCTGAGAGATGGCTTCCGGTGCACACT
GTCGAGTCCATTCTCGTGTCCGTCATTTCCATGCTCTCTTGCCCGAACGA
CGAAAGCGCCGCTAATCTTGATGCCGCCAAAGAGTGGAGAGAGACGCCAG
AAATATTCAAGAAGAAAGTGCGCGAAACAGTAAGACGTGCTCAAGAGGAT
CTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24229:721644..722499+

>Gvermi6948.t1 ID=Gvermi6948.t1|Name=Gvermi6948.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=507bp|location=Sequence derived from alignment at ScGOVlb_24229:721644..722499+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTTCAAATAGCCAAGCGGCCATGCTGCTCATGCGGCAACTCAAAGA
ATTGAACAAGAACATCGACTCTGGTTTCTCCGCGGGGCTTGTAGACGATG
CTAATCCCTTTGAGTGGCAAATAATTCTCACCGGACCTCCAGACACTTGG
TACGAGGGGGGTCTGTTCAAGGCAAAGCTCTCTTTTCCTCCGGACTACCC
GTACATGCCACCAACAATGCGTTTCATATCCGACATGTGGCACCCGAACA
TTTACAAGGACGGCAGAGTCTGTATCTCCATATTGCACGCGCCTGGTTCC
GACCCTAATCAGTACGAAAATGCGTCTGAGAGATGGCTTCCGGTGCACAC
TGTCGAGTCCATTCTCGTGTCCGTCATTTCCATGCTCTCTTGCCCGAACG
ACGAAAGCGCCGCTAATCTTGATGCCGCCAAAGAGTGGAGAGAGACGCCA
GAAATATTCAAGAAGAAAGTGCGCGAAACAGTAAGACGTGCTCAAGAGGA
TCTGTGA
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