Gvermi6932.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6932.t1
Unique NameGvermi6932.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length299
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:608213..612274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMD125CT
PFAMsDnaJ,DnaJ_C
Max annot lvl2759|Eukaryota
KEGG koko:K09510,ko:K09511
Evalue6.01e-09
EggNOG OGsCOG0484@1|root,KOG0714@2759|Eukaryota
Descriptionprotein folding
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6932Gvermi6932Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 608213..612274 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6932.t1.start1Gvermi6932.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 608213..608215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6932.t1.CDS1Gvermi6932.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 608213..608689 +
Gvermi6932.t1.CDS2Gvermi6932.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 611446..611553 +
Gvermi6932.t1.CDS3Gvermi6932.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 611649..611763 +
Gvermi6932.t1.CDS4Gvermi6932.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 611904..611907 +
Gvermi6932.t1.CDS5Gvermi6932.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 612003..612148 +
Gvermi6932.t1.CDS6Gvermi6932.t1.CDS6Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 612228..612274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6932.t1.exon1Gvermi6932.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 608213..608689 +
Gvermi6932.t1.exon2Gvermi6932.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 611446..611553 +
Gvermi6932.t1.exon3Gvermi6932.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 611649..611763 +
Gvermi6932.t1.exon4Gvermi6932.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 611904..611907 +
Gvermi6932.t1.exon5Gvermi6932.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 612003..612148 +
Gvermi6932.t1.exon6Gvermi6932.t1.exon6Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 612228..612274 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6932.t1.intron1Gvermi6932.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 608690..611445 +
Gvermi6932.t1.intron2Gvermi6932.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 611554..611648 +
Gvermi6932.t1.intron3Gvermi6932.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 611764..611903 +
Gvermi6932.t1.intron4Gvermi6932.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 611908..612002 +
Gvermi6932.t1.intron5Gvermi6932.t1.intron5Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24229 612149..612227 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6932.t1.stop1Gvermi6932.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 612272..612274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6932.t1Gvermi6932.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 608213..612274 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6932.t1 ID=Gvermi6932.t1|Name=Gvermi6932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=299bp
MPADLNDSLGAIFSDLFSGVAGAVGPNGVVEDFVEFLERRVGGFGTGGDD
GLRDVLRSDDQHVLEAEVEDARFVLRQIRARRARVHDEQRALRRRAEDWA
ARAERADALRQYDVRDAARERQRQLLADAERFGKRAAKADALARDQEQRL
RSIEERLATLANMVNVEGKISVWIKSGSFSHASDLYIKVLIDDNDIWKTE
DKDGFSPDWDSTVVKHIKGDYEKIILKLMDEDTFSRDDVIATAEFSIADL
LDDGINDDAVPMRDADGNDVGTLAVNINFEEGDVNMFDLLGSMLHKDD*
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spliced messenger RNA

>Gvermi6932.t1 ID=Gvermi6932.t1|Name=Gvermi6932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=897bp|location=Sequence derived from alignment at ScGOVlb_24229:608213..612274+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGCCGACCTCAACGACAGCCTGGGCGCCATCTTCTCCGACCTGTT
CTCCGGCGTGGCCGGCGCCGTGGGCCCCAACGGCGTCGTGGAGGACTTTG
TGGAGTTTCTGGAGCGGCGCGTGGGCGGCTTCGGCACGGGCGGCGACGAC
GGGCTGCGCGACGTGCTGCGCAGCGACGACCAGCACGTGCTGGAGGCCGA
GGTGGAGGACGCGCGCTTCGTGCTGCGCCAGATCCGCGCGCGGCGCGCGC
GCGTGCACGACGAGCAGCGCGCGCTGCGCCGCCGCGCCGAGGACTGGGCG
GCGCGCGCCGAGCGCGCCGACGCGCTGCGCCAGTACGACGTGCGCGACGC
GGCGCGCGAGCGCCAGCGCCAGCTGCTGGCCGACGCCGAGCGCTTTGGCA
AGCGCGCCGCCAAGGCGGACGCGCTGGCGCGCGACCAGGAGCAGCGCCTG
CGCAGCATCGAGGAGCGCCTCGCCACCcTCGCAAACATGGTTAACGTCGA
GGGAAAGATCAGCGTTTGGATCAAGTCTGGCAGCTTCAGCCACGCCAGCG
ACCTCTACATCAAGGTGCTTATCGACGACAACGACATCTGGAAAACCGAA
GACAAGGACGGCTTTTCGCCCGACTGGGACTCCACCGTCGTCAAGCACAT
CAAGGGCGACTACGAAAAGATCATCCTCAAGCTCATGGACGAGGACACAT
tctcCCGCGACGACGTGATCGCCACGGCCGAGTTCTCCATCGCCGACCTG
CTGgacgacggcatcaacgacgacgccgtgcccatgcgcgacgccgacgg
caacgacgTGGGCACCCTCGCCGTCAACATCAACTTTGAGGAAGGAGACG
TCAATATGTTCGACCTTCTGGGCTCCATGCTGCACAAGGACGACTAG
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protein sequence of Gvermi6932.t1

>Gvermi6932.t1 ID=Gvermi6932.t1|Name=Gvermi6932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=299bp
MPADLNDSLGAIFSDLFSGVAGAVGPNGVVEDFVEFLERRVGGFGTGGDD
GLRDVLRSDDQHVLEAEVEDARFVLRQIRARRARVHDEQRALRRRAEDWA
ARAERADALRQYDVRDAARERQRQLLADAERFGKRAAKADALARDQEQRL
RSIEERLATLANMVNVEGKISVWIKSGSFSHASDLYIKVLIDDNDIWKTE
DKDGFSPDWDSTVVKHIKGDYEKIILKLMDEDTFSRDDVIATAEFSIADL
LDDGINDDAVPMRDADGNDVGTLAVNINFEEGDVNMFDLLGSMLHKDD*
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mRNA from alignment at ScGOVlb_24229:608213..612274+

Legend: start_codonpolypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6932.t1 ID=Gvermi6932.t1|Name=Gvermi6932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=4062bp|location=Sequence derived from alignment at ScGOVlb_24229:608213..612274+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGCCGACCTCAACGACAGCCTGGGCGCCATCTTCTCCGACCTGTT
CTCCGGCGTGGCCGGCGCCGTGGGCCCCAACGGCGTCGTGGAGGACTTTG
TGGAGTTTCTGGAGCGGCGCGTGGGCGGCTTCGGCACGGGCGGCGACGAC
GGGCTGCGCGACGTGCTGCGCAGCGACGACCAGCACGTGCTGGAGGCCGA
GGTGGAGGACGCGCGCTTCGTGCTGCGCCAGATCCGCGCGCGGCGCGCGC
GCGTGCACGACGAGCAGCGCGCGCTGCGCCGCCGCGCCGAGGACTGGGCG
GCGCGCGCCGAGCGCGCCGACGCGCTGCGCCAGTACGACGTGCGCGACGC
GGCGCGCGAGCGCCAGCGCCAGCTGCTGGCCGACGCCGAGCGCTTTGGCA
AGCGCGCCGCCAAGGCGGACGCGCTGGCGCGCGACCAGGAGCAGCGCCTG
CGCAGCATCGAGGAGCGCCTCGCCACCGTGCGCTCgcagcgccagcagcc
gccgcagcacggcggcgccagcagcggcggcggcgacgtcagcggcggcg
gcgacgtcagcggcggcggcggcggcgacgtggcgcgcgcgccggcggcg
gacgcgcggcgcgagcggcagcaggcggccatcgacgacgagctgcagaa
gatgaagcgcgacctcgggctgtaggcgcgcgcgatgcacgcgcggcggc
gcgttggcaacacacgtttttggtcagcgcgctgcttgcactgacggcgg
ccatggacgacgagctgcacgagatggcgcgccacgtcgggctgtgggcg
cGCGCGCGCGCGTTGCAAAACACATGTTGGTAAACGCGCTTGGTGCACGG
GGGCGGCGGCGCGTTGCAAAGCACGCTTTGACAAAGGCGCTGGATGCACT
ggcggcggcggcggcggcggcggcggcggcggcggcgCGGGAGCGACAAG
CGGCGCAAGGCGCGCGCGCGCGCGTGCGGGGCGGCGGCGGCGGAGGGGGC
TGCGGTAAACGCGCGCGGTCTCGAGGCGTGCACGCGGCGGGGGGGCGGTC
TCGAGGCGCGCGGCGGCGGCGGCGCGCAGACGCGCGCGTAGAGCGCGGCG
GCGGCGGCGCGCGCGGCGGTATAAATAACGACGCGCGACAGCGTGGCCGG
CGCGCGCGCGGTTAATGGACGTGGCGCGGCGCGCGAGCGCTCGCGAGACG
CGGCGCGTTACAGCGGGAATCGGTGCGACgcggcggcggcggcggcggcg
gcggtggtgggcaggcagggaggccggcggcggcggcggcggcggcagcg
gcggcagcggcggcagcggcggcggcCGGGGGAGGGGGGGGAGGTGGAGG
GGGAGGGGGAGGCGGCGCGGAGGACGCGCAGCGGCGTGGGCGAGCGCGCG
GCGCGGACGACGCGCGGCGGCGAATTGGCACGGCGTGTAATTGGGCGGCG
CGCGCGTGGGACAGGCGCACGACTGGGTGGTTTACAGCGGCGCGGCGTCG
AGCCGGGCGCGCTCACGCGCGCGGCGGCGGCGGCGGCGGCGGCACGAAGG
CGGCCGCCGACGCGGCGAACGACGCGGAGCggcgcaggcggtcggcggcg
gcgacggcggcgacggcggcggcggtcgggcggcacggctgcagcgcctt
gagcggcggcggcggcggctgcggcggcggcggcggcggccacgccacgc
ggCGGCACgcggggcagcgccggcggcggcgcagccacgccgccacgcac
ggcgtgtggaagacgcgcccgcagcacgccgtggcgctggcgccgtggcg
ccggcgcacggcgtccaggcagatggcgcacacgcagtggcgcggcggcg
cgcggcggcagcgcggcgcggcgcgcgccacgcgctggtcgctgggtgcg
cgcgccgcggcggcggcggcgcgggggggcgcgcgcggcgccgcgcggcg
ccgcggcggcgccggcgccggcgccgagcgcagcggcgtcggcaccggcg
gcggcgcgtgcagcccggcggcCAGATGGCGGTAGATGGCGCGCGCGCTC
AGCGCGAACAGCAGCGCGAACAGCGCGCCCCACACGGCCATAAGCGCCAC
GCCCCACGCGggcatggctggcggcggcggcggcggcggcggcggcggcg
gcggcggcgcggcggtgcggcggcacggcgatggcggcagcgcgcggcgt
cggcggcggcggcggcggcggcagcagcaacgcggcggcggcggcgtcga
gcgcggcggcgagcgcggCGGCGAGCGCGGCGGCGCCAGCGGGAGCACAG
CGCCGCCGGCGCCAAGCgcgcgcagcaacatgcgccgcgccgctgcgccg
ctgcgtcgctgcgtcgctgcgccgctgcgccgctgcgccgttgcgccgct
gcaccgccgctgcgccgcgccgccgcgccgccgcgccgccgcgccgcCAC
Ccgcgagagcggcgcgcggcgggagcgcgctccgccctcgccgcgcgcca
acgcgtggcgctgcgcgcgccgcgcgcgtgcgcgcgccgctctaacgccc
ccgccctccgcgcgcTCACCGCCACCGCCGCCTGTTTTCCCCCGTTACAG
TCGCCCCATGCGTGGACGCGTGTCACAGCACACTGCCCCACACTGCCCCA
CACTGCCCTGCACTGCCCTGCGCCACCCGCACACGTGGCCGCCCGCACAC
GTGGCCGCGCGTACACGCGTTGCAAAGCACACGTGGTCCCCCACACGTGG
TCACGTGCACACGTGGTGCACATTACACGTGCGCGCGAGTGCACACGTTG
CGGGGCGCTCATGAGCGGTCGACGAGCACGACGTTGGTTGCAGCGCCTGT
TGCAGCGCAGCCGGCCGGGTGGCTTTGGCTTAGCACGTGGCGTGGCGCTT
TGCTTACAAAGCGGCGCGCGCCGAGACAAGTGGCGCGCCGCGCGCGCCGT
TGCGTCCCGTCACGCTGACACCCAAAATATCGCCAATCTGCGCCGCGCCC
GCGCTTTCAGCGCACCGCCAGTGCCACGTGCTGCTCGCCGCTACTGTCGG
TCGCCGTTCGCCCCCTCGCTGCCCGCCTCCTTGCCGCCGCCCCCCCCACC
CCCTCATCAGTTTGCGCGCATTTAAGAgcgccgcctccagcaccgcgccc
gctgccgccgccgcccgccgcatcgcacgtcccgtcccatcgcacccagc
cccgccccgccccgccccgcccgccgcacccagcTCGCAAACATGGTTAA
CGTCGAGGGAAAGATCAGCGTTTGGATCAAGTCTGGCAGCTTCAGCCACG
CCAGCGACCTCTACATCAAGGTGCTTATCGACGACAACGACGTACGTCAC
cgcccccgccgcgcgcgcgccgcttcttccgccacgccgcgcacacgctg
actctccgccgcgcgcccgcgcgcccgcCCACCTAGATCTGGAAAACCGA
AGACAAGGACGGCTTTTCGCCCGACTGGGACTCCACCGTCGTCAAGCACA
TCAAGGGCGACTACGAAAAGATCATCCTCAAGCTCATGGACGAGGACACA
TGTGAGTTGccgccgcccgccgcccgccgcccgccgcccCAATCCCGCGC
GCAGCACTTCTCTGAccgcgcgcccgcctacgcccgcgcctgcgcccgcg
cctgcgcccgcgcccgccgcccgccgcccccgatcccgcagtctcgtaag
tacttgtgtgcgccccgcgccgccaccgcgcgcgccccgcgcccaaccgc
cgagctaaccgcccacgcgcgcgcgcgcgcccCCCGACAGCCGCGACGAC
GTGATCGCCACGGCCGAGTTCTCCATCGCCGACCTGCTGgacgacggcat
caacgacgacgccgtgcccatgcgcgacgccgacggcaacgacgTGGGCA
CCCTCGCCGTCAACATCAACTTTGAGGAAGGAGACGGTACGTTcgccgcc
gccgcgccgcgccgcgtccgccgccgccgcgcgctcaccgacgTCTCTTT
TGTGCGCGCGCGCAGTCAATATGTTCGACCTTCTGGGCTCCATGCTGCAC
AAGGACGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:608213..612274+

>Gvermi6932.t1 ID=Gvermi6932.t1|Name=Gvermi6932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=897bp|location=Sequence derived from alignment at ScGOVlb_24229:608213..612274+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGGCCGACCTCAACGACAGCCTGGGCGCCATCTTCTCCGACCTGTT
CTCCGGCGTGGCCGGCGCCGTGGGCCCCAACGGCGTCGTGGAGGACTTTG
TGGAGTTTCTGGAGCGGCGCGTGGGCGGCTTCGGCACGGGCGGCGACGAC
GGGCTGCGCGACGTGCTGCGCAGCGACGACCAGCACGTGCTGGAGGCCGA
GGTGGAGGACGCGCGCTTCGTGCTGCGCCAGATCCGCGCGCGGCGCGCGC
GCGTGCACGACGAGCAGCGCGCGCTGCGCCGCCGCGCCGAGGACTGGGCG
GCGCGCGCCGAGCGCGCCGACGCGCTGCGCCAGTACGACGTGCGCGACGC
GGCGCGCGAGCGCCAGCGCCAGCTGCTGGCCGACGCCGAGCGCTTTGGCA
AGCGCGCCGCCAAGGCGGACGCGCTGGCGCGCGACCAGGAGCAGCGCCTG
CGCAGCATCGAGGAGCGCCTCGCCACCcTCGCAAACATGGTTAACGTCGA
GGGAAAGATCAGCGTTTGGATCAAGTCTGGCAGCTTCAGCCACGCCAGCG
ACCTCTACATCAAGGTGCTTATCGACGACAACGACATCTGGAAAACCGAA
GACAAGGACGGCTTTTCGCCCGACTGGGACTCCACCGTCGTCAAGCACAT
CAAGGGCGACTACGAAAAGATCATCCTCAAGCTCATGGACGAGGACACAT
tctcCCGCGACGACGTGATCGCCACGGCCGAGTTCTCCATCGCCGACCTG
CTGgacgacggcatcaacgacgacgccgtgcccatgcgcgacgccgacgg
caacgacgTGGGCACCCTCGCCGTCAACATCAACTTTGAGGAAGGAGACG
TCAATATGTTCGACCTTCTGGGCTCCATGCTGCACAAGGACGACTAG
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