Gvermi6978.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6978.t1
Unique NameGvermi6978.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length133
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:800483..800881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog671143.DAMO_2336
PFAMsDUF814,FbpA
Max annot lvl2|Bacteria
Evalue8.75e-12
EggNOG OGsCOG1293@1|root,COG1293@2|Bacteria,2NP83@2323|unclassified Bacteria
DescriptionFibronectin-binding protein A N-terminus (FbpA)
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6978Gvermi6978Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 800483..800881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6978.t1.stop1Gvermi6978.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 800483..800485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6978.t1.CDS1Gvermi6978.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 800483..800881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6978.t1.exon1Gvermi6978.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 800483..800881 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6978.t1.start1Gvermi6978.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 800879..800881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6978.t1Gvermi6978.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 800483..800881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6978.t1 ID=Gvermi6978.t1|Name=Gvermi6978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=133bp
MKSLNTSEDNLLIHVGDNAAENDALWRGAKQNDLWFHLDGMSSPHLVLSV
PKKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGK
AGSVTLKKEPTRTKVVFDERCIAFFLGQLKKK*
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spliced messenger RNA

>Gvermi6978.t1 ID=Gvermi6978.t1|Name=Gvermi6978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp|location=Sequence derived from alignment at ScGOVlb_24229:800483..800881- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGCTTAAACACCTCCGAGGATAACTTGCTAATTCACGTTGGAGA
CAACGCCGCAGAGAACGACGCGTTGTGGCGCGGCGCAAAACAGAATGACC
TCTGGTTCCACCTGGACGGCATGTCATCGCCTCACCTCGTCCTTTCCGTC
CCCAAGAAGAAGAAGACCAAGGCGCAGCTCAGCGAAGCAATACACGAATG
CGCCCAACTAGTGAAATACTTCTCGAAGGCGCGCGAAATGGCGCAGGTTA
CTGTGATGTATATCGAGGCCAAGTGGGTGTCTGCAGACCCTTCTGGAAAG
GCGGGATCGGTGACTCTCAAGAAGGAGCCTACGAGGACCAAGGTGGTGTT
TGACGAAAGATGCATTGCTTTCTTCCTGGGGCAGTTGAAGAAGAAATAG
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protein sequence of Gvermi6978.t1

>Gvermi6978.t1 ID=Gvermi6978.t1|Name=Gvermi6978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=133bp
MKSLNTSEDNLLIHVGDNAAENDALWRGAKQNDLWFHLDGMSSPHLVLSV
PKKKKTKAQLSEAIHECAQLVKYFSKAREMAQVTVMYIEAKWVSADPSGK
AGSVTLKKEPTRTKVVFDERCIAFFLGQLKKK*
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mRNA from alignment at ScGOVlb_24229:800483..800881-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6978.t1 ID=Gvermi6978.t1|Name=Gvermi6978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=399bp|location=Sequence derived from alignment at ScGOVlb_24229:800483..800881- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAGCTTAAACACCTCCGAGGATAACTTGCTAATTCACGTTGGAGA
CAACGCCGCAGAGAACGACGCGTTGTGGCGCGGCGCAAAACAGAATGACC
TCTGGTTCCACCTGGACGGCATGTCATCGCCTCACCTCGTCCTTTCCGTC
CCCAAGAAGAAGAAGACCAAGGCGCAGCTCAGCGAAGCAATACACGAATG
CGCCCAACTAGTGAAATACTTCTCGAAGGCGCGCGAAATGGCGCAGGTTA
CTGTGATGTATATCGAGGCCAAGTGGGTGTCTGCAGACCCTTCTGGAAAG
GCGGGATCGGTGACTCTCAAGAAGGAGCCTACGAGGACCAAGGTGGTGTT
TGACGAAAGATGCATTGCTTTCTTCCTGGGGCAGTTGAAGAAGAAATAG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:800483..800881-

>Gvermi6978.t1 ID=Gvermi6978.t1|Name=Gvermi6978.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=399bp|location=Sequence derived from alignment at ScGOVlb_24229:800483..800881- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGAGCTTAAACACCTCCGAGGATAACTTGCTAATTCACGTTGGAGA
CAACGCCGCAGAGAACGACGCGTTGTGGCGCGGCGCAAAACAGAATGACC
TCTGGTTCCACCTGGACGGCATGTCATCGCCTCACCTCGTCCTTTCCGTC
CCCAAGAAGAAGAAGACCAAGGCGCAGCTCAGCGAAGCAATACACGAATG
CGCCCAACTAGTGAAATACTTCTCGAAGGCGCGCGAAATGGCGCAGGTTA
CTGTGATGTATATCGAGGCCAAGTGGGTGTCTGCAGACCCTTCTGGAAAG
GCGGGATCGGTGACTCTCAAGAAGGAGCCTACGAGGACCAAGGTGGTGTT
TGACGAAAGATGCATTGCTTTCTTCCTGGGGCAGTTGAAGAAGAAATAG
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