Gvermi6970.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6970.t1
Unique NameGvermi6970.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:781453..782304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog90675.XP_010512245.1
PFAMsadh_short
Max annot lvl35493|Streptophyta
KEGG rclassRC00154,RC00205,RC00823,RC01491
KEGG koko:K00079
KEGG ReactionR02581,R02975,R04285,R09420
KEGG Pathwayko00590,ko00790,ko00980,ko01100,ko05204,map00590,map00790,map00980,map01100,map05204
Evalue2.72e-19
EggNOG OGsCOG1028@1|root,KOG1208@2759|Eukaryota,37MT1@33090|Viridiplantae,3GBN6@35493|Streptophyta,3HYC5@3699|Brassicales
EC1.1.1.184,1.1.1.189,1.1.1.197
DescriptionBelongs to the short-chain dehydrogenases reductases (SDR) family
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6970Gvermi6970Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 781453..782304 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6970.t1.stop1Gvermi6970.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 781453..781455 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6970.t1.CDS1Gvermi6970.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 781453..782304 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6970.t1.exon1Gvermi6970.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 781453..782304 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6970.t1.start1Gvermi6970.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 782302..782304 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6970.t1Gvermi6970.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 781453..782304 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6970.t1 ID=Gvermi6970.t1|Name=Gvermi6970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=284bp
MSFKNIVSTKHQDGGPTIAVVTGASRGLGLAIASKLLDDGFVVICAQRTA
SVLSSTHSNALSIPLDLAEAQSVEHFIARMISQLPYIDLLINNSATCPED
HVFRDQCPPWTEVIRVNFFAQVHLTERLLPLLEASSRCPRVVYISSGDGE
LVFFAPNLCEELKKLSYQLSVPDLMCAISSFISRTLIKNPNGHQEYVFDI
LPAYRLSTAALNCYTCVAASRAQKMRSLISFVSVCPADVDTSMHDPSAVV
LTPEEAVIKMKCILDPKEVCASGKFLRHGSEID*
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spliced messenger RNA

>Gvermi6970.t1 ID=Gvermi6970.t1|Name=Gvermi6970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=852bp|location=Sequence derived from alignment at ScGOVlb_24229:781453..782304- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATTCAAGAACATCGTTTCGACAAAGCATCAAGACGGTGGACCAAC
GATCGCGGTCGTCACAGGAGCTTCTCGCGGACTTGGTCTAGCAATAGCGT
CAAAGCTGTTGGATGATGGCTTCGTCGTGATTTGTGCTCAAAGAACAGCA
TCAGTTCTTTCGTCTACTCACTCTAACGCGTTAAGCATCCCACTAGATTT
GGCTGAAGCACAAAGCGTGGAACATTTTATCGCAAGGATGATCTCTCAAC
TACCGTACATTGATTTACTCATAAACAACTCAGCCACTTGTCCCGAGGAT
CATGTTTTTCGTGACCAATGCCCTCCATGGACTGAAGTCATACGAGTGAA
CTTTTTCGCTCAGGTTCATCTCACAGAGAGGCTATTGCCACTGCTAGAAG
CGTCAAGCCGCTGTCCTCGAGTGGTCTATATCTCATCTGGCGATGGAGAA
CTTGTCTTCTTTGCCCCCAATCTTTGTGAAGAACTCAAAAAGCTCTCATA
CCAGCTATCGGTACCGGACCTAATGTGTGCTATTTCCAGTTTTATTTCTC
GAACCCTAATAAAAAACCCGAACGGTCATCAAGAGTACGTCTTTGACATA
CTACCGGCGTACAGGCTGTCCACAGCAGCGTTGAATTGCTACACATGTGT
TGCCGCGTCGAGAGCACAGAAAATGAGAAGTTTAATTTCATTTGTGTCAG
TTTGTCCTGCTGATGTGGATACTTCGATGCATGACCCCAGTGCTGTGGTA
CTGACGCCAGAAGAAGCTGTAATCAAAATGAAATGTATTCTTGACCCGAA
AGAAGTTTGTGCTTCAGGCAAGTTTCTTCGCCATGGCTCGGAAATAGATT
AG
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protein sequence of Gvermi6970.t1

>Gvermi6970.t1 ID=Gvermi6970.t1|Name=Gvermi6970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=284bp
MSFKNIVSTKHQDGGPTIAVVTGASRGLGLAIASKLLDDGFVVICAQRTA
SVLSSTHSNALSIPLDLAEAQSVEHFIARMISQLPYIDLLINNSATCPED
HVFRDQCPPWTEVIRVNFFAQVHLTERLLPLLEASSRCPRVVYISSGDGE
LVFFAPNLCEELKKLSYQLSVPDLMCAISSFISRTLIKNPNGHQEYVFDI
LPAYRLSTAALNCYTCVAASRAQKMRSLISFVSVCPADVDTSMHDPSAVV
LTPEEAVIKMKCILDPKEVCASGKFLRHGSEID*
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mRNA from alignment at ScGOVlb_24229:781453..782304-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6970.t1 ID=Gvermi6970.t1|Name=Gvermi6970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=852bp|location=Sequence derived from alignment at ScGOVlb_24229:781453..782304- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATTCAAGAACATCGTTTCGACAAAGCATCAAGACGGTGGACCAAC
GATCGCGGTCGTCACAGGAGCTTCTCGCGGACTTGGTCTAGCAATAGCGT
CAAAGCTGTTGGATGATGGCTTCGTCGTGATTTGTGCTCAAAGAACAGCA
TCAGTTCTTTCGTCTACTCACTCTAACGCGTTAAGCATCCCACTAGATTT
GGCTGAAGCACAAAGCGTGGAACATTTTATCGCAAGGATGATCTCTCAAC
TACCGTACATTGATTTACTCATAAACAACTCAGCCACTTGTCCCGAGGAT
CATGTTTTTCGTGACCAATGCCCTCCATGGACTGAAGTCATACGAGTGAA
CTTTTTCGCTCAGGTTCATCTCACAGAGAGGCTATTGCCACTGCTAGAAG
CGTCAAGCCGCTGTCCTCGAGTGGTCTATATCTCATCTGGCGATGGAGAA
CTTGTCTTCTTTGCCCCCAATCTTTGTGAAGAACTCAAAAAGCTCTCATA
CCAGCTATCGGTACCGGACCTAATGTGTGCTATTTCCAGTTTTATTTCTC
GAACCCTAATAAAAAACCCGAACGGTCATCAAGAGTACGTCTTTGACATA
CTACCGGCGTACAGGCTGTCCACAGCAGCGTTGAATTGCTACACATGTGT
TGCCGCGTCGAGAGCACAGAAAATGAGAAGTTTAATTTCATTTGTGTCAG
TTTGTCCTGCTGATGTGGATACTTCGATGCATGACCCCAGTGCTGTGGTA
CTGACGCCAGAAGAAGCTGTAATCAAAATGAAATGTATTCTTGACCCGAA
AGAAGTTTGTGCTTCAGGCAAGTTTCTTCGCCATGGCTCGGAAATAGATT
AG
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Coding sequence (CDS) from alignment at ScGOVlb_24229:781453..782304-

>Gvermi6970.t1 ID=Gvermi6970.t1|Name=Gvermi6970.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=852bp|location=Sequence derived from alignment at ScGOVlb_24229:781453..782304- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCATTCAAGAACATCGTTTCGACAAAGCATCAAGACGGTGGACCAAC
GATCGCGGTCGTCACAGGAGCTTCTCGCGGACTTGGTCTAGCAATAGCGT
CAAAGCTGTTGGATGATGGCTTCGTCGTGATTTGTGCTCAAAGAACAGCA
TCAGTTCTTTCGTCTACTCACTCTAACGCGTTAAGCATCCCACTAGATTT
GGCTGAAGCACAAAGCGTGGAACATTTTATCGCAAGGATGATCTCTCAAC
TACCGTACATTGATTTACTCATAAACAACTCAGCCACTTGTCCCGAGGAT
CATGTTTTTCGTGACCAATGCCCTCCATGGACTGAAGTCATACGAGTGAA
CTTTTTCGCTCAGGTTCATCTCACAGAGAGGCTATTGCCACTGCTAGAAG
CGTCAAGCCGCTGTCCTCGAGTGGTCTATATCTCATCTGGCGATGGAGAA
CTTGTCTTCTTTGCCCCCAATCTTTGTGAAGAACTCAAAAAGCTCTCATA
CCAGCTATCGGTACCGGACCTAATGTGTGCTATTTCCAGTTTTATTTCTC
GAACCCTAATAAAAAACCCGAACGGTCATCAAGAGTACGTCTTTGACATA
CTACCGGCGTACAGGCTGTCCACAGCAGCGTTGAATTGCTACACATGTGT
TGCCGCGTCGAGAGCACAGAAAATGAGAAGTTTAATTTCATTTGTGTCAG
TTTGTCCTGCTGATGTGGATACTTCGATGCATGACCCCAGTGCTGTGGTA
CTGACGCCAGAAGAAGCTGTAATCAAAATGAAATGTATTCTTGACCCGAA
AGAAGTTTGTGCTTCAGGCAAGTTTCTTCGCCATGGCTCGGAAATAGATT
AG
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