Gvermi7027.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7027.t1
Unique NameGvermi7027.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length230
Homology
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A2V3J8B1_9FLOR (E3 ubiquitin-protein ligase RNF13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J8B1_9FLOR)

HSP 1 Score: 223 bits (569), Expect = 5.310e-70
Identity = 112/171 (65.50%), Postives = 131/171 (76.61%), Query Frame = 0
Query:   39 HPASLPEGRENGTSLRRADRERLVFAYIPAQAPAIVRMQRLAKKSGISTQELDSVAPVSGYTCEATGTS-DPQANMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQRRTRGESGAFELAIVDEHNI 208
            HP+   E  E     RRADRERLVFAY P QAPAIVRMQRLAKK+G+   E+++VAPV+ Y  ++T +S D   N  G  VCAVCLEDM  GSKTRRLPCGHWFDADCIDVWATKANRCPVCNT II E ELE+RRL  FE  +H++RQR+RRTRGE+G FEL +V E ++
Sbjct:   67 HPSH--EEVEGDDPSRRADRERLVFAYFPTQAPAIVRMQRLAKKAGLLPTEINAVAPVTDYVKQSTSSSVDLTGNKGGYDVCAVCLEDMNEGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTHIIGEEELEKRRLGVFETLEHNVRQRRRRTRGENGTFELGLVTESSV 235          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A1X6P6W7_PORUM (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6W7_PORUM)

HSP 1 Score: 65.9 bits (159), Expect = 5.760e-9
Identity = 26/49 (53.06%), Postives = 30/49 (61.22%), Query Frame = 0
Query:  115 GDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKI 163
            G   CAVCL +   G   RRLPC H + A CI+ WA + NRCPVCN  I
Sbjct:  176 GGDACAVCLFEPEDGESVRRLPCNHLYHASCIETWAARNNRCPVCNAAI 224          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A0L0DCR1_THETB (Esterase/lipase n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DCR1_THETB)

HSP 1 Score: 65.9 bits (159), Expect = 8.050e-9
Identity = 29/75 (38.67%), Postives = 39/75 (52.00%), Query Frame = 0
Query:   85 ISTQELDSVAPVSGYTCEATGTSDPQANMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVC 159
            +S + L+++AP S Y    T  +           C +CLED+V G  +RRLPC H F ADCI  W  +   CP C
Sbjct:  759 LSVRALEALAPASPYELPLTADAPD--------TCVICLEDLVDGEPSRRLPCSHVFHADCIAEWVARKAECPTC 825          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A1X6PHP3_PORUM (RING-type domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PHP3_PORUM)

HSP 1 Score: 63.5 bits (153), Expect = 9.940e-9
Identity = 39/108 (36.11%), Postives = 48/108 (44.44%), Query Frame = 0
Query:   85 ISTQELDSVAPVSGYTCEATGTSDPQANMSGDHVCAVCLEDMVPGSKTRRLP-CGHWFDADCIDVWATKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQRRT 191
            +S  ELD +       C        +    G   CAVCLE M  G   R++P C H F   CI VWA++ NRCPVCN  I    E+    L          RQ+Q RT
Sbjct:  101 VSRAELDRL-------CPPIALPQAKGGEEGTPACAVCLEAMADGHIVRQMPACAHLFHDACIAVWASRKNRCPVCNQAIAPVDEVP---LVAASVVHQQRRQQQART 198          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A7J7IHH4_9RHOD (RING-type domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHH4_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 1.610e-8
Identity = 26/70 (37.14%), Postives = 39/70 (55.71%), Query Frame = 0
Query:  119 CAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQ 188
            C++CL+ ++ G  +R+LPCGH F + CI  W  +ANRCP+C  +I+            FE     +RQ Q
Sbjct:  157 CSICLDPLMKGDMSRKLPCGHLFHSHCISKWVQRANRCPLCQHEIVP-----------FEEVAQELRQTQ 215          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A022Q105_ERYGU (RING-type domain-containing protein n=2 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022Q105_ERYGU)

HSP 1 Score: 60.1 bits (144), Expect = 9.320e-8
Identity = 23/65 (35.38%), Postives = 39/65 (60.00%), Query Frame = 0
Query:  112 NMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKIIDE----GELERR 172
            ++  +  CAVC E   PG++ ++LPCGH + ++CI  W  + + CPVC  K+  +    G ++RR
Sbjct:   71 HVRAESTCAVCKERFEPGTRVKKLPCGHLYHSECIGPWLEQRSSCPVCRQKVTHQQKVNGSVKRR 135          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A1D2ABJ1_AUXPR (RING-type domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2ABJ1_AUXPR)

HSP 1 Score: 62.0 bits (149), Expect = 1.020e-7
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0
Query:  119 CAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKI 163
            C VCLED+ PG++ +RLPCGH F   CID W      CPVC   I
Sbjct:  282 CVVCLEDVSPGTRLKRLPCGHAFHTRCIDRWLRSRGACPVCQRGI 326          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A3M7KVX0_AUXPR (RING-type domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7KVX0_AUXPR)

HSP 1 Score: 62.0 bits (149), Expect = 1.430e-7
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0
Query:  119 CAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKI 163
            C VCLED+ PG++ +RLPCGH F   CID W      CPVC   I
Sbjct:  521 CVVCLEDVSPGTRLKRLPCGHAFHTRCIDRWLRSRGACPVCQRGI 565          
BLAST of Gvermi7027.t1 vs. uniprot
Match: A0A3L6PMN5_PANMI (RING-type domain-containing protein n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6PMN5_PANMI)

HSP 1 Score: 58.5 bits (140), Expect = 2.630e-7
Identity = 29/68 (42.65%), Postives = 37/68 (54.41%), Query Frame = 0
Query:  113 MSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKIIDEGELERRRLRTFEAA 180
            +SG+H CA+CLEDM P  K R +PC H F   CI  W      CPVC   +  +   E +RL   +AA
Sbjct:   65 ISGEHRCAICLEDMEPRQKFRMMPCSHSFHQLCIFNWLQINRLCPVCQFALPSD---EEQRLSDEQAA 129          
BLAST of Gvermi7027.t1 vs. uniprot
Match: E4XH76_OIKDI (RING-type E3 ubiquitin transferase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4XH76_OIKDI)

HSP 1 Score: 60.5 bits (145), Expect = 4.750e-7
Identity = 32/107 (29.91%), Postives = 53/107 (49.53%), Query Frame = 0
Query:  106 TSDPQANMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWATKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQRRTRGESGAFELAIVDEHNILASV 212
            T   +  ++ D  C +C E+MV GS +++LPCGH F A C+  W  +   CP C   ++        R RT  A D  +R+  +  R  +   +L    ++N+L +V
Sbjct:  276 TDATEEELANDSTCIICREEMVAGSSSKKLPCGHIFHAACLRSWFQRQQTCPTCRLDVL--------RARTPAARD--VREPDQLARQRAAIEQL----QNNLLGNV 368          
The following BLAST results are available for this feature:
BLAST of Gvermi7027.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A2V3J8B1_9FLOR5.310e-7065.50E3 ubiquitin-protein ligase RNF13 n=1 Tax=Gracilar... [more]
A0A1X6P6W7_PORUM5.760e-953.06RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A0L0DCR1_THETB8.050e-938.67Esterase/lipase n=1 Tax=Thecamonas trahens ATCC 50... [more]
A0A1X6PHP3_PORUM9.940e-936.11RING-type domain-containing protein n=1 Tax=Porphy... [more]
A0A7J7IHH4_9RHOD1.610e-837.14RING-type domain-containing protein n=1 Tax=Cyanid... [more]
A0A022Q105_ERYGU9.320e-835.38RING-type domain-containing protein n=2 Tax=Erythr... [more]
A0A1D2ABJ1_AUXPR1.020e-753.33RING-type domain-containing protein n=1 Tax=Auxeno... [more]
A0A3M7KVX0_AUXPR1.430e-753.33RING-type domain-containing protein n=2 Tax=Auxeno... [more]
A0A3L6PMN5_PANMI2.630e-742.65RING-type domain-containing protein n=2 Tax=Panicu... [more]
E4XH76_OIKDI4.750e-729.91RING-type E3 ubiquitin transferase n=1 Tax=Oikople... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 119..159
e-value: 5.9E-9
score: 45.8
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 118..160
e-value: 8.9E-12
score: 45.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 119..160
score: 11.899158
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 103..174
e-value: 1.3E-17
score: 64.7
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 73..171
NoneNo IPR availablePANTHERPTHR22765:SF289OS12G0620100 PROTEINcoord: 73..171
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 112..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:988431..989281 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7027.t1Gvermi7027.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 988431..989281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7027.t1 ID=Gvermi7027.t1|Name=Gvermi7027.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=230bp
MPLIPLIRHWSDHIATSLTQTELPYLEREKVTPSNMFYHPASLPEGRENG
TSLRRADRERLVFAYIPAQAPAIVRMQRLAKKSGISTQELDSVAPVSGYT
CEATGTSDPQANMSGDHVCAVCLEDMVPGSKTRRLPCGHWFDADCIDVWA
TKANRCPVCNTKIIDEGELERRRLRTFEAADHSIRQRQRRTRGESGAFEL
AIVDEHNILASVSNVPPNRTSSTVVDESA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD