Gvermi6916.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6916.t1
Unique Name	Gvermi6916.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	388

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:457727..458890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	13735.ENSPSIP00000003754
Preferred name	Gpdh
PFAMs	NAD_Gly3P_dh_C,NAD_Gly3P_dh_N
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00029
KEGG ko	ko:K00006
KEGG Reaction	R00842
KEGG Pathway	ko00564,ko01110,ko04011,map00564,map01110,map04011
GOs	GO:0003674,GO:0003824,GO:0004367,GO:0004368,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006066,GO:0006067,GO:0006072,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0006972,GO:0006973,GO:0007610,GO:0007626,GO:0007629,GO:0008150,GO:0008152,GO:0008344,GO:0009628,GO:0009987,GO:0016491,GO:0016614,GO:0016616,GO:0016901,GO:0016999,GO:0017144,GO:0019637,GO:0019725,GO:0030016,GO:0030017,GO:0030018,GO:0030534,GO:0031430,GO:0031672,GO:0031674,GO:0032501,GO:0033554,GO:0034308,GO:0036296,GO:0042592,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043292,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044444,GO:0044449,GO:0044464,GO:0046486,GO:0050896,GO:0051716,GO:0052646,GO:0055093,GO:0055114,GO:0065007,GO:0065008,GO:0070482,GO:0071214,GO:0071470,GO:0071474,GO:0071704,GO:0099080,GO:0099081,GO:0099512,GO:0104004,GO:1901135,GO:1901615
Evalue	8.53e-129
EggNOG OGs	COG0240@1\|root,KOG2711@2759\|Eukaryota,38E7F@33154\|Opisthokonta,3BCI8@33208\|Metazoa,3CVH2@33213\|Bilateria,47ZP4@7711\|Chordata,48VII@7742\|Vertebrata,4C8NQ@8459\|Testudines
EC	1.1.1.8
Description	NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6916	Gvermi6916	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 457727..458890 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6916.t1.start1	Gvermi6916.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 457727..457729 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6916.t1.CDS1	Gvermi6916.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 457727..458890 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6916.t1.exon1	Gvermi6916.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 457727..458890 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6916.t1.stop1	Gvermi6916.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 458888..458890 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6916.t1	Gvermi6916.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 457727..458890 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:457727..458890+
coding sequence from alignment at ScGOVlb_24229:457727..458890+

mRNA sequence

>Gvermi6916.t1 ID=Gvermi6916.t1|Name=Gvermi6916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=388bp
MKPIVIRTEAGARSHATPSPSHSRQESCENILPTKKICIVGAGNWGSAAA
VIIANNVKNFEYYHDTIKMWVHEEIIDGEKLTDIINNTHYNVKYLPEHRL
PDNIVAVPDLLEAAADCTVFVFVLPHQFLPRACKTLKGHIPPDSIAISLI
KGIDFNAKGVVLMTDIIKNELSIDVSVLSGANIANEIAAGKFCESTIGYS
NADNAIVFFELFNNRNFRISLIKDTNAVQVFGALKNVIALGAGFCDALDM
GNNTKAALIRIGLLEMHRFASKYFSPIHDATMVESCGLADLITTCMGGRN
RRVSEAFARARGKRSWEELEDEMLKGQKLQGTSTVLEVMKILKRDQCVEE
FPFIKLIYQIAYEGAEIETIVDFPDEHAAAALDDLDD*

spliced messenger RNA

>Gvermi6916.t1 ID=Gvermi6916.t1|Name=Gvermi6916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_24229:457727..458890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCCAATTGTTATTCGCACCGAGGCAGGCGCACGCTCCCATGCCAC
TCCCTCCCCATCTCATTCCCGTCAGGAGTCTTGTGAGAACATACTTCCCA
CCAAAAAGATATGCATTGTTGGAGCAGGAAACTGGGGCAGTGCTGCCGCA
GTTATCATTGCCAACAACGTAAAGAACTTTGAATACTACCACGATACCAT
TAAAATGTGGGTCCATGAAGAAATCATTGACGGTGAAAAGCTTACAGACA
TCATCAACAACACTCATTACAACGTCAAATACCTTCCCGAGCATCGTCTG
CCCGATAATATTGTCGCTGTTCCAGATTTACTGGAAGCCGCTGCCGACTG
TACCGTCTTCGTGTTCGTGCTTCCCCATCAGTTCCTGCCCCGCGCCTGCA
AGACGCTAAAGGGGCACATACCGCCAGACTCTATTGCGATCTCTCTCATC
AAGGGCATCGACTTTAACGCGAAGGGCGTGGTACTCATGACCGACATAAT
CAAGAACGAGCTTTCCATAGACGTTTCCGTTCTCAGTGGTGCAAACATTG
CCAATGAAATTGCTGCAGGGAAGTTCTGCGAATCCACAATTGGATATTCA
AATGCTGACAATGCCATCGTTTTCTTTGAGCTGTTCAACAACCGCAACTT
CCGCATCAGTCTGATTAAGGACACCAACGCTGTGCAGGTGTTTGGCGCCC
TGAAGAATGTGATTGCATTGGGCGCTGGCTTTTGTGATGCGTTGGACATG
GGCAACAACACAAAGGCGGCATTAATCCGAATCGGTCTACTCGAAATGCA
TCGCTTCGCCAGCAAGTACTTCTCGCCCATTCACGACGCCACCATGGTCG
AGTCATGTGGCCTTGCAGACTTGATCACAACGTGTATGGGCGGCCGTAAT
CGACGCGTGTCTGAAGCCTTTGCCAGAGCTCGCGGTAAACGCTCGTGGGA
AGAACTGGAAGATGAGATGCTCAAAGGACAAAAGCTGCAGGGGACAAGCA
CTGTGTTGGAAGTGATGAAGATTCTCAAACGAGATCAATGTGTGGAAGAG
TTTCCCTTCATAAAACTGATTTACCAGATCGCCTATGAAGGTGCAGAAAT
TGAGACGATTGTGGATTTCCCGGACGAGCATGCGGCTGCGGCTTTGGACG
ATCTCGATGATTAA

protein sequence of Gvermi6916.t1

>Gvermi6916.t1 ID=Gvermi6916.t1|Name=Gvermi6916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=388bp
MKPIVIRTEAGARSHATPSPSHSRQESCENILPTKKICIVGAGNWGSAAA
VIIANNVKNFEYYHDTIKMWVHEEIIDGEKLTDIINNTHYNVKYLPEHRL
PDNIVAVPDLLEAAADCTVFVFVLPHQFLPRACKTLKGHIPPDSIAISLI
KGIDFNAKGVVLMTDIIKNELSIDVSVLSGANIANEIAAGKFCESTIGYS
NADNAIVFFELFNNRNFRISLIKDTNAVQVFGALKNVIALGAGFCDALDM
GNNTKAALIRIGLLEMHRFASKYFSPIHDATMVESCGLADLITTCMGGRN
RRVSEAFARARGKRSWEELEDEMLKGQKLQGTSTVLEVMKILKRDQCVEE
FPFIKLIYQIAYEGAEIETIVDFPDEHAAAALDDLDD*

mRNA from alignment at ScGOVlb_24229:457727..458890+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6916.t1 ID=Gvermi6916.t1|Name=Gvermi6916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at ScGOVlb_24229:457727..458890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCAATTGTTATTCGCACCGAGGCAGGCGCACGCTCCCATGCCAC
TCCCTCCCCATCTCATTCCCGTCAGGAGTCTTGTGAGAACATACTTCCCA
CCAAAAAGATATGCATTGTTGGAGCAGGAAACTGGGGCAGTGCTGCCGCA
GTTATCATTGCCAACAACGTAAAGAACTTTGAATACTACCACGATACCAT
TAAAATGTGGGTCCATGAAGAAATCATTGACGGTGAAAAGCTTACAGACA
TCATCAACAACACTCATTACAACGTCAAATACCTTCCCGAGCATCGTCTG
CCCGATAATATTGTCGCTGTTCCAGATTTACTGGAAGCCGCTGCCGACTG
TACCGTCTTCGTGTTCGTGCTTCCCCATCAGTTCCTGCCCCGCGCCTGCA
AGACGCTAAAGGGGCACATACCGCCAGACTCTATTGCGATCTCTCTCATC
AAGGGCATCGACTTTAACGCGAAGGGCGTGGTACTCATGACCGACATAAT
CAAGAACGAGCTTTCCATAGACGTTTCCGTTCTCAGTGGTGCAAACATTG
CCAATGAAATTGCTGCAGGGAAGTTCTGCGAATCCACAATTGGATATTCA
AATGCTGACAATGCCATCGTTTTCTTTGAGCTGTTCAACAACCGCAACTT
CCGCATCAGTCTGATTAAGGACACCAACGCTGTGCAGGTGTTTGGCGCCC
TGAAGAATGTGATTGCATTGGGCGCTGGCTTTTGTGATGCGTTGGACATG
GGCAACAACACAAAGGCGGCATTAATCCGAATCGGTCTACTCGAAATGCA
TCGCTTCGCCAGCAAGTACTTCTCGCCCATTCACGACGCCACCATGGTCG
AGTCATGTGGCCTTGCAGACTTGATCACAACGTGTATGGGCGGCCGTAAT
CGACGCGTGTCTGAAGCCTTTGCCAGAGCTCGCGGTAAACGCTCGTGGGA
AGAACTGGAAGATGAGATGCTCAAAGGACAAAAGCTGCAGGGGACAAGCA
CTGTGTTGGAAGTGATGAAGATTCTCAAACGAGATCAATGTGTGGAAGAG
TTTCCCTTCATAAAACTGATTTACCAGATCGCCTATGAAGGTGCAGAAAT
TGAGACGATTGTGGATTTCCCGGACGAGCATGCGGCTGCGGCTTTGGACG
ATCTCGATGATTAA

Coding sequence (CDS) from alignment at ScGOVlb_24229:457727..458890+

>Gvermi6916.t1 ID=Gvermi6916.t1|Name=Gvermi6916.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1164bp|location=Sequence derived from alignment at ScGOVlb_24229:457727..458890+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAGCCAATTGTTATTCGCACCGAGGCAGGCGCACGCTCCCATGCCAC
TCCCTCCCCATCTCATTCCCGTCAGGAGTCTTGTGAGAACATACTTCCCA
CCAAAAAGATATGCATTGTTGGAGCAGGAAACTGGGGCAGTGCTGCCGCA
GTTATCATTGCCAACAACGTAAAGAACTTTGAATACTACCACGATACCAT
TAAAATGTGGGTCCATGAAGAAATCATTGACGGTGAAAAGCTTACAGACA
TCATCAACAACACTCATTACAACGTCAAATACCTTCCCGAGCATCGTCTG
CCCGATAATATTGTCGCTGTTCCAGATTTACTGGAAGCCGCTGCCGACTG
TACCGTCTTCGTGTTCGTGCTTCCCCATCAGTTCCTGCCCCGCGCCTGCA
AGACGCTAAAGGGGCACATACCGCCAGACTCTATTGCGATCTCTCTCATC
AAGGGCATCGACTTTAACGCGAAGGGCGTGGTACTCATGACCGACATAAT
CAAGAACGAGCTTTCCATAGACGTTTCCGTTCTCAGTGGTGCAAACATTG
CCAATGAAATTGCTGCAGGGAAGTTCTGCGAATCCACAATTGGATATTCA
AATGCTGACAATGCCATCGTTTTCTTTGAGCTGTTCAACAACCGCAACTT
CCGCATCAGTCTGATTAAGGACACCAACGCTGTGCAGGTGTTTGGCGCCC
TGAAGAATGTGATTGCATTGGGCGCTGGCTTTTGTGATGCGTTGGACATG
GGCAACAACACAAAGGCGGCATTAATCCGAATCGGTCTACTCGAAATGCA
TCGCTTCGCCAGCAAGTACTTCTCGCCCATTCACGACGCCACCATGGTCG
AGTCATGTGGCCTTGCAGACTTGATCACAACGTGTATGGGCGGCCGTAAT
CGACGCGTGTCTGAAGCCTTTGCCAGAGCTCGCGGTAAACGCTCGTGGGA
AGAACTGGAAGATGAGATGCTCAAAGGACAAAAGCTGCAGGGGACAAGCA
CTGTGTTGGAAGTGATGAAGATTCTCAAACGAGATCAATGTGTGGAAGAG
TTTCCCTTCATAAAACTGATTTACCAGATCGCCTATGAAGGTGCAGAAAT
TGAGACGATTGTGGATTTCCCGGACGAGCATGCGGCTGCGGCTTTGGACG
ATCTCGATGATTAA