Gvermi6867.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6867.t1
Unique NameGvermi6867.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length1144
Homology
BLAST of Gvermi6867.t1 vs. uniprot
Match: A0A2V3IX35_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX35_9FLOR)

HSP 1 Score: 977 bits (2525), Expect = 0.000e+0
Identity = 507/962 (52.70%), Postives = 642/962 (66.74%), Query Frame = 0
Query:  209 QPLSSAVSKNARRIWNHRVLQKSGVSTEAFHALELFVKTIPPIPIQPDHNRRQMRNMRGWIQQLEKPSCDSMWDQLMEALRKDTGPQGALGRHWDHDVCRFILGHVVSENQTSQTRQAMNNAIKRELICPTESGNSTRGKTFRDLFREKCHKANVKLNALENAAYPKRSSHASN----PGRHSSTTPADPLHRYAVEHEDSFASRGRATDGRI------SEAELKKLRELCPHKDEWGRSAWWKLESDEDVKFLPELLVYFRLYELRDLLIDFRWIMRMFRCVNFSEGMFLAPARAYDVILRYAMSPSSQLPLPDVESFRLIRNAIMVILPVLYKDKARATEHGFHAHLATQLTGRLLSLKRKFPTVACLIQSIELYAPKPWLKPLTRCFRQPRTDIALAVPSEGIVVPHQIALSDDGKFLVTMNKSSRKQLHKKAAVKGGAAPAGLRDDAENKPAAASMQRTPSSSSISVWEVRTGKRVVEVCNVGERISHVAITKDNNCIIGGTNEDIFFWHLDKGNTWTAGAARQGHPPARGLSSIRPTSNPRRVLTAHKIEGKSVILEWDTQTGSREKVYDAVESKPNCIDIHSLRGYFASGHDNGFIHLWNLSDDNNDTPILTFKDEGDRQGAQNGVSLVDANKEKDSGSVFGLGSGTISISFLEKEDDLSLASISSKRGDKQ------HWIRIWVLPPQKFLDGSSQAFVSCKRVAVWQCKLARQILCSVDGKLFTGGDDEVARMWEREEGGKWKQYTIEIDGSDDS--SMSSTFICCGKRTKLMATYVTKSPYVVVWDTRNKDLRRKIMTRTGVYRSYISLEPQSVDVADMDQYQFLRPAKDADEF---GEGGEATAAGSRHQRGSQTLWKNPKFFFQQSTVSSESVVRPGRLQPWLELKLGGDDVPGLHVCFDQPVTSGVTGLFV---------KAPSAVGGSEDENRDERDELQRRGMVIKLE 1140
            QP         RRIW  R L  SG+S +  +AL++F+  +P IPIQPDH++R  RNMRGWIQQLE P CD +W  L   L  D  P      HWDHD+CR+ILG VVS NQTS+TRQA+NNAIKREL+C +ESG STRGKTFRDLFREKCHKA V+L  LE+ A PKR+ H         RH +T   D  + Y    + S  SR R            +E  L++LRE CPHKDEWG +AWW L+ +  ++ LP LLV   LYELR+LLIDFRWIMR FR V+FS GM   P   YDVILRYA S +S+LPL D+ESFRL+RNA+MVILPVL +D+A   +  FHAHLATQ+ GRLLSLKR+FPT+A LIQS+EL+AP PWLKPLTRCF+QPRTDIALAVPSEGI  PHQI LS DG+FLVT N S R+     ++ +     +G+  +   +P AA  Q      SI++W+V +GK+V EV  +   + H+AIT+DNNCIIG TN+ +FFWH + G TW      +  P  +GLSSI+PT+ P+ VLT HK+E + +I  WDTQTGSRE++Y +V SKPNCID+ S   +FASGHDNGFIHLWN  DD    PILTF+DEG  +G+Q  VSL +AN ++D      + +GTISISF E+++DL LAS+S    D+         IRIW+LPP++ L    Q+FVSCKR AVWQ    R++  S DG LFTGGDD VARMWE+E+   WKQYT+E D   +   +M+S FI CGK+TK +ATYVTKSPYVVVWDT +K+L RKIM RTG YR Y  L   SVDV+DM + Q ++ +K+ ++F   G+ G      SRH++GS+TLW+NPK +F  S+   + V R G LQPWL + +G      L VCFDQPV    +G FV            S V   +D+N  +  + +RRG+V+KLE
Sbjct:  227 QPSVHPSPSRERRIWTRRALSSSGISEKLLNALDIFMTDLPKIPIQPDHSKRPTRNMRGWIQQLENPQCDPIWAALTSVLLVDNTPTTVFAIHWDHDLCRYILGRVVSANQTSKTRQAINNAIKRELVCRSESG-STRGKTFRDLFREKCHKARVQLGPLEDKARPKRAPHLPPVYPLSTRHHTTAVTDATNPYPPPVDGSSFSRARPAQSDYHPNMAHTEPRLRRLRESCPHKDEWGHTAWWTLQDENHIRLLPTLLVDHNLYELRNLLIDFRWIMRTFRSVDFSHGMPQTPTEGYDVILRYAASQNSRLPLVDIESFRLVRNALMVILPVLSQDQAHPVDQSFHAHLATQIVGRLLSLKRRFPTIASLIQSVELHAPTPWLKPLTRCFQQPRTDIALAVPSEGIFRPHQIVLSHDGRFLVTANVSIRQDPVVSSSGED-LVMSGVFRNGSREPTAAKHQGVRKLVSITIWDVHSGKQVGEVGGIKSHVVHLAITRDNNCIIGETNDGLFFWHFETGETWRLKDVHKATPRLKGLSSIKPTTKPQLVLTTHKLEKEPLIALWDTQTGSRERMYSSVSSKPNCIDVSSKMEFFASGHDNGFIHLWNWKDDK---PILTFRDEGTGKGSQQVVSLSEANSQRDPDGKGQVNTGTISISFFERDNDLLLASVSWNPADRSKIRKTPELIRIWLLPPRRILADDVQSFVSCKRTAVWQSPRVREVYWSTDGNLFTGGDDGVARMWEQEDDDTWKQYTMEKDVKSERPLNMASAFISCGKQTKFVATYVTKSPYVVVWDTTDKELCRKIMKRTGFYRPYFPLLWHSVDVSDMQELQSVKSSKNVNDFADYGKVGTDAVVESRHEKGSRTLWQNPKLYF--SSPDEKGVKRLGELQPWLTMAVGAAGKEDLRVCFDQPVRHCYSGTFVIDKGGAGLQDITSGVDPEDDKNEAKGKQAERRGIVVKLE 1181          
BLAST of Gvermi6867.t1 vs. uniprot
Match: R7QKS7_CHOCR (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKS7_CHOCR)

HSP 1 Score: 524 bits (1349), Expect = 4.040e-165
Identity = 356/953 (37.36%), Postives = 500/953 (52.47%), Query Frame = 0
Query:  263 RNMRGWIQQLEKPSCDSMWDQLMEALRKDTGPQGALGRHWDHDVCRFILGHVVSENQTSQTRQAMNNAIKRELICPTESGNSTRGKTFRDLFREKCHKANVKLNALEN------AAYPKRSSHASNPGRHSSTTP--------ADPLHRYAVEHEDSFA---------SRGRATDGRIS-----------EAELKKLRELCPHKDEWGRSAWWKLESDEDVKFLPELLV--YFRLYELRDLLIDFRWIMRMFRCVNFSEGMFLAPARAYDVILRYAMSPSSQLPLPDVESFRLIRNAIMVILPVLYKDK-ARATEHGFHAHLATQLTGRLLSLKRKFPTVACLIQSIELYAPKPWLKPLTRCFRQPRTDIALAVPSEGIVVPHQIALSDDGKFLVTMNKS------SRKQLHKKAAVKGGAAPAGLRDDAENKPAAASMQRTPSSSSISVWEVRTGKRVVEVCNVGERISHVAITKDNNCIIGGTNEDIFFWHLDK-GNTWTAGAARQGHPPARGLSSIRPTSNPRRVLTAHKIEGKS-----VILEWDTQTGSREKVYDAVESKPNCIDIHSLRGYFASGHDNGFIHLWNLSDDNNDTPILTFKDEGD-RQGAQNGVSLVDANKEKDSGSVFGLGSGTISISFLEKEDDLSLASISSKRGDKQHWIRIWVLPPQKFLDGSSQAFVSCKRVAVWQCKLARQILCSVDGKLFTGGDDEVARMW-EREEGGKWKQYTIEIDGSDDSS-MSSTFICCGKRTKLMATYVTKSPYVVVWDTRNKD--LRRKIMTRTGVYRSYISLEPQSVDVADMDQYQFLRPAKDA----DEFGEGGEATAAGSRHQRGSQTLWKNPKFFFQQSTVSSESVVRPGRLQPWLELKLGGDDVPGLHVCFDQPVTSGVTGLFVKA-----------PSAV--GGSEDENRDERD---ELQRRGMVIKLED 1141
            RNMR WI  L+ P   ++W  L+ ALR D  P+ A G  WD   CRF+LG +++++  +Q+RQA+NNAIKREL  P ES +S++ KTFRDLFRE+C    V+L  LE         YP  ++    P   S   P         +P   YA       A          + R +D R             +  L + R+ C   DEWGR+AWW L  + D+  LP  L   Y  L+ELR+LL+DFRWI R F C + SE M      +YD++L    +   +LP  +VE+FRLIRNA+ +I P+L  D      +  F AHLATQL GRLLSLK +FP +ACLIQSIEL+APKPWL+PL  CF++P TDI +AVPS G + PH IALS DG  L            S K+  +K      +    L+   E +  A  +      SSI +W+V TG+ V  V  +   +  +AIT D++C+I  T + +FFW L+K  + + AG A +  P    ++S+ PT   R +LT  +  G        I  W+T TG R + +D V S+  C D+     YFASGH+NG+IHLW L     + P+L+FK+EG   +  Q  V+L   N+ + +G++      TIS+SF  KE+   LA++S+        IR+W LPP   +    ++FV+  R AV +C   RQ+  S  G  F+ GDD +ARMW +REEGG+W  + +     + +S +SS  +  G+ TKL+ATYVTKSPYV VWD    D     ++  R  +YRSY+ + P S D  D++    LR            G GG    A +  +R      +  K F +    ++  +V  G + P L++K   +   GL VCF+QPV  GV+G F +            P+AV   G   E   ER    E  RRGMV  L+D
Sbjct:   12 RNMRMWITDLDSPQHAALWKPLVGALRDDRTPEAAWGPAWDRIFCRFMLGKLITDD--NQSRQAVNNAIKRELDTPVESRSSSKSKTFRDLFREQCRAGRVQLPKLEQPPLPGPVPYPSSAASRQTPIAPSLHLPHIAPAAESGEPHSLYAASPVGPRAYPDMTYINLKKRRLSDQRTPLPTSNAVVLPLQDALLRYRDSC-RTDEWGRTAWWNLAIN-DINKLPLWLAHDYTYLFELRNLLLDFRWIRRTFECAD-SETMHQVSTSSYDLLLDIPKTDPGRLPAIEVEAFRLIRNALKLITPILASDSIVNPKDDTFIAHLATQLVGRLLSLKTRFPLIACLIQSIELHAPKPWLRPLNPCFQEPGTDIKMAVPSNGTLTPHLIALSPDGALLAVSGTRKVPSVISAKETERKPYTSLSSTVKKLKAITEGRSTARKV------SSICIWDVETGRLVCRVERIENLVRCLAITPDHSCVIAETVDGLFFWKLEKLSDGYRAGKAVEATPRPNPVTSMMPTVRTRELLTTSRSGGDESMHTGTIALWNTDTGERVRTFDCVTSQATCTDVSLDGEYFASGHNNGYIHLWTLHGSETE-PVLSFKNEGAVAENGQQHVALDKVNRTRSNGTL-----KTISLSFYGKEEQRWLAAVSANE-----IIRVWELPPGSIIRKGKESFVTTIRRAVLRCPRVRQVQWSKCGWFFSAGDDGIARMWMQREEGGRWVDHALGRKKRERASDISSVLVSSGRGTKLVATYVTKSPYVTVWDLSGFDGGNASQVARRQRLYRSYMCMVPDSEDARDIEHLTALRKTSTGVSGKSGVGNGGLEGMADAEIRR------ELEKRFHKLDIKNATKLV--GEMHPRLKMK-PEEWRRGLEVCFEQPVIVGVSGTFRRGEREDGGKIGVDPAAVHAAGIPGELAGERGGEYEEGRRGMVAALQD 933          
The following BLAST results are available for this feature:
BLAST of Gvermi6867.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IX35_9FLOR0.000e+052.70Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QKS7_CHOCR4.040e-16537.36WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 351..371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 632..662
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..394
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..196
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 375..389
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..166
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 128..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 765..804
e-value: 0.036
score: 23.2
coord: 674..712
e-value: 150.0
score: 3.3
coord: 899..935
e-value: 29.0
score: 7.7
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 654..1006
e-value: 3.0E-17
score: 64.2
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilySUPERFAMILY50998Quinoprotein alcohol dehydrogenase-likecoord: 603..1003

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:297501..306568 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6867.t1Gvermi6867.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 297501..306568 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6867.t1 ID=Gvermi6867.t1|Name=Gvermi6867.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=1144bp
MPSPKLPPAEKPLSPSSEPHPAPHTPKPDSQVHSISPPGNVPHSEPSTHM
AATSILSTSPSVSNQVSSRHDYRRPAQRHNTPNGVHAEPPPKRRRTGAEP
HSASPMSLPPSAAAGDMHASVPHRCQPGSLEESRRDPVPSKAPDSRPTRV
EESWPATQTPTPAVHELSTAAVNDANADKPSPNDDTRVRYRAPSENVASE
DSRPAIPVQPLSSAVSKNARRIWNHRVLQKSGVSTEAFHALELFVKTIPP
IPIQPDHNRRQMRNMRGWIQQLEKPSCDSMWDQLMEALRKDTGPQGALGR
HWDHDVCRFILGHVVSENQTSQTRQAMNNAIKRELICPTESGNSTRGKTF
RDLFREKCHKANVKLNALENAAYPKRSSHASNPGRHSSTTPADPLHRYAV
EHEDSFASRGRATDGRISEAELKKLRELCPHKDEWGRSAWWKLESDEDVK
FLPELLVYFRLYELRDLLIDFRWIMRMFRCVNFSEGMFLAPARAYDVILR
YAMSPSSQLPLPDVESFRLIRNAIMVILPVLYKDKARATEHGFHAHLATQ
LTGRLLSLKRKFPTVACLIQSIELYAPKPWLKPLTRCFRQPRTDIALAVP
SEGIVVPHQIALSDDGKFLVTMNKSSRKQLHKKAAVKGGAAPAGLRDDAE
NKPAAASMQRTPSSSSISVWEVRTGKRVVEVCNVGERISHVAITKDNNCI
IGGTNEDIFFWHLDKGNTWTAGAARQGHPPARGLSSIRPTSNPRRVLTAH
KIEGKSVILEWDTQTGSREKVYDAVESKPNCIDIHSLRGYFASGHDNGFI
HLWNLSDDNNDTPILTFKDEGDRQGAQNGVSLVDANKEKDSGSVFGLGSG
TISISFLEKEDDLSLASISSKRGDKQHWIRIWVLPPQKFLDGSSQAFVSC
KRVAVWQCKLARQILCSVDGKLFTGGDDEVARMWEREEGGKWKQYTIEID
GSDDSSMSSTFICCGKRTKLMATYVTKSPYVVVWDTRNKDLRRKIMTRTG
VYRSYISLEPQSVDVADMDQYQFLRPAKDADEFGEGGEATAAGSRHQRGS
QTLWKNPKFFFQQSTVSSESVVRPGRLQPWLELKLGGDDVPGLHVCFDQP
VTSGVTGLFVKAPSAVGGSEDENRDERDELQRRGMVIKLEDKI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR011047Quinoprotein_ADH-like_supfam