Gvermi6924.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6924.t1
Unique Name	Gvermi6924.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	442

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24229	contig	ScGOVlb_24229:587235..588560 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMP354CT
Preferred name	SLC17A9
PFAMs	MFS_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08193,ko:K10398,ko:K12303
KEGG TC	2.A.1.14,2.A.1.14.21
GOs	GO:0003674,GO:0005215,GO:0005315,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0008643,GO:0009314,GO:0009416,GO:0009507,GO:0009526,GO:0009528,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009605,GO:0009607,GO:0009624,GO:0009628,GO:0009706,GO:0009941,GO:0009987,GO:0010028,GO:0015075,GO:0015144,GO:0015145,GO:0015229,GO:0015291,GO:0015318,GO:0015711,GO:0015749,GO:0015849,GO:0015882,GO:0016020,GO:0016021,GO:0016108,GO:0016116,GO:0016122,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031967,GO:0031969,GO:0031975,GO:0031976,GO:0031984,GO:0034219,GO:0034220,GO:0034357,GO:0035461,GO:0042170,GO:0042651,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0046943,GO:0050896,GO:0051119,GO:0051179,GO:0051180,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0051704,GO:0051707,GO:0055035,GO:0055085,GO:0071702,GO:0071704,GO:0090482,GO:0098656,GO:1903825,GO:1905039
Evalue	2.07e-61
EggNOG OGs	KOG2532@1\|root,KOG2532@2759\|Eukaryota
Description	transmembrane transport
COG category	L
BRITE	ko00000,ko02000,ko03036,ko04812

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6924	Gvermi6924	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24229 587235..588560 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6924.t1.start1	Gvermi6924.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24229 587235..587237 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6924.t1.CDS1	Gvermi6924.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24229 587235..588560 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6924.t1.exon1	Gvermi6924.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24229 587235..588560 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6924.t1.stop1	Gvermi6924.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24229 588558..588560 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6924.t1	Gvermi6924.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24229 587235..588560 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24229:587235..588560+
coding sequence from alignment at ScGOVlb_24229:587235..588560+

mRNA sequence

>Gvermi6924.t1 ID=Gvermi6924.t1|Name=Gvermi6924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=442bp
MIPERYVMVILCAVCCCINYADRVNISVAIISIAEQYSFNLHEQSLIMSY
FYLGYLPMNLGGALLCRRFGAKNVLTWGAIFWSFFTFITPIACGMGFRVL
VLCRFLMGLSEGVAYPSVYHFLSTWISPTERARGVALLLTGTHVGTTLAL
ILSPIIIRNVSWQAIFYSFGALGIVWVAVWQMIAYDRYEKVDSSAPSDEE
SSSTSSLTPDGAENKHEPSSARQELRLILAILRNRHTLAVCLTHAMLGLV
HFVVLSWLPSYFKNVYDIQTTALSFTFIPYFSMAVSGNIGGYLADTLLHG
GMSLSRVRKLVTCIANLGAATTLLAFATAKTIGVALAYISLSLSFMSLNS
GGVSSCYMDMAAPSVVGIFQATSNTMSSLAGFVAIPLSTKVMDMLGGSWR
AMFASLSLCYISMTIVFCSFVESDRVLDESNGFPSKSPLVS*

spliced messenger RNA

>Gvermi6924.t1 ID=Gvermi6924.t1|Name=Gvermi6924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24229:587235..588560+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCCGAGCGCTACGTCATGGTCATACTGTGCGCCGTCTGCTGTTG
CATAAACTATGCTGACCGTGTCAACATCTCCGTCGCCATCATCAGCATCG
CCGAGCAGTACTCCTTCAACTTGCATGAGCAGTCTTTGATCATGTCCTAT
TTCTATCTCGGTTATTTGCCCATGAACCTGGGAGGCGCCCTTCTCTGTCG
ACGGTTTGGGGCAAAGAACGTTCTCACTTGGGGTGCAATTTTTTGGTCCT
TCTTCACCTTCATCACCCCCATCGCCTGTGGTATGGGATTCAGAGTTTTA
GTTCTTTGCCGCTTTCTCATGGGTCTCTCGGAGGGCGTTGCGTATCCGTC
CGTCTATCACTTTCTGTCCACATGGATATCGCCCACGGAAAGAGCAAGGG
GTGTTGCTCTATTGCTCACCGGCACGCATGTCGGAACAACATTGGCCCTC
ATATTGTCTCCAATAATCATCCGAAATGTCTCATGGCAGGCCATATTTTA
TTCCTTTGGCGCTCTCGGTATCGTGTGGGTTGCCGTCTGGCAAATGATTG
CCTACGACCGCTACGAGAAGGTTGATAGCTCCGCCCCGTCTGACGAGGAA
TCTTCCTCCACCTCCAGCTTAACTCCAGACGGCGCAGAGAACAAGCATGA
GCCGTCTTCGGCTCGTCAAGAACTGCGCTTGATACTCGCCATCCTTCGAA
ATAGACACACGCTAGCCGTCTGTCTTACACACGCCATGTTAGGTCTCGTG
CATTTTGTCGTTCTAAGTTGGCTCCCCTCCTATTTCAAGAACGTCTACGA
CATTCAAACCACGGCTCTTTCCTTCACTTTCATCCCTTATTTTTCAATGG
CTGTCAGTGGCAATATCGGCGGATATCTCGCCGACACTCTTTTGCATGGC
GGAATGTCTCTCTCAAGAGTTCGAAAGCTTGTTACATGCATTGCAAATCT
GGGCGCCGCTACCACTTTGCTTGCCTTTGCGACTGCAAAAACAATTGGCG
TGGCATTGGCGTACATATCTTTAAGTTTGTCCTTTATGAGCCTCAACAGC
GGCGGCGTTTCCAGTTGTTATATGGACATGGCAGCACCAAGTGTGGTTGG
AATCTTCCAAGCCACGTCCAACACCATGTCCAGCCTTGCTGGCTTTGTCG
CAATCCCCTTGTCGACAAAGGTCATGGACATGCTCGGTGGGTCTTGGCGT
GCAATGTTCGCCAGTCTTAGCCTGTGTTACATCTCCATGACTATTGTTTT
CTGCTCCTTCGTGGAAAGCGATCGCGTTCTGGACGAAAGCAACGGCTTCC
CTTCCAAGAGCCCCCTCGTCTCCTGA

protein sequence of Gvermi6924.t1

>Gvermi6924.t1 ID=Gvermi6924.t1|Name=Gvermi6924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=442bp
MIPERYVMVILCAVCCCINYADRVNISVAIISIAEQYSFNLHEQSLIMSY
FYLGYLPMNLGGALLCRRFGAKNVLTWGAIFWSFFTFITPIACGMGFRVL
VLCRFLMGLSEGVAYPSVYHFLSTWISPTERARGVALLLTGTHVGTTLAL
ILSPIIIRNVSWQAIFYSFGALGIVWVAVWQMIAYDRYEKVDSSAPSDEE
SSSTSSLTPDGAENKHEPSSARQELRLILAILRNRHTLAVCLTHAMLGLV
HFVVLSWLPSYFKNVYDIQTTALSFTFIPYFSMAVSGNIGGYLADTLLHG
GMSLSRVRKLVTCIANLGAATTLLAFATAKTIGVALAYISLSLSFMSLNS
GGVSSCYMDMAAPSVVGIFQATSNTMSSLAGFVAIPLSTKVMDMLGGSWR
AMFASLSLCYISMTIVFCSFVESDRVLDESNGFPSKSPLVS*

mRNA from alignment at ScGOVlb_24229:587235..588560+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6924.t1 ID=Gvermi6924.t1|Name=Gvermi6924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24229:587235..588560+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCCCGAGCGCTACGTCATGGTCATACTGTGCGCCGTCTGCTGTTG
CATAAACTATGCTGACCGTGTCAACATCTCCGTCGCCATCATCAGCATCG
CCGAGCAGTACTCCTTCAACTTGCATGAGCAGTCTTTGATCATGTCCTAT
TTCTATCTCGGTTATTTGCCCATGAACCTGGGAGGCGCCCTTCTCTGTCG
ACGGTTTGGGGCAAAGAACGTTCTCACTTGGGGTGCAATTTTTTGGTCCT
TCTTCACCTTCATCACCCCCATCGCCTGTGGTATGGGATTCAGAGTTTTA
GTTCTTTGCCGCTTTCTCATGGGTCTCTCGGAGGGCGTTGCGTATCCGTC
CGTCTATCACTTTCTGTCCACATGGATATCGCCCACGGAAAGAGCAAGGG
GTGTTGCTCTATTGCTCACCGGCACGCATGTCGGAACAACATTGGCCCTC
ATATTGTCTCCAATAATCATCCGAAATGTCTCATGGCAGGCCATATTTTA
TTCCTTTGGCGCTCTCGGTATCGTGTGGGTTGCCGTCTGGCAAATGATTG
CCTACGACCGCTACGAGAAGGTTGATAGCTCCGCCCCGTCTGACGAGGAA
TCTTCCTCCACCTCCAGCTTAACTCCAGACGGCGCAGAGAACAAGCATGA
GCCGTCTTCGGCTCGTCAAGAACTGCGCTTGATACTCGCCATCCTTCGAA
ATAGACACACGCTAGCCGTCTGTCTTACACACGCCATGTTAGGTCTCGTG
CATTTTGTCGTTCTAAGTTGGCTCCCCTCCTATTTCAAGAACGTCTACGA
CATTCAAACCACGGCTCTTTCCTTCACTTTCATCCCTTATTTTTCAATGG
CTGTCAGTGGCAATATCGGCGGATATCTCGCCGACACTCTTTTGCATGGC
GGAATGTCTCTCTCAAGAGTTCGAAAGCTTGTTACATGCATTGCAAATCT
GGGCGCCGCTACCACTTTGCTTGCCTTTGCGACTGCAAAAACAATTGGCG
TGGCATTGGCGTACATATCTTTAAGTTTGTCCTTTATGAGCCTCAACAGC
GGCGGCGTTTCCAGTTGTTATATGGACATGGCAGCACCAAGTGTGGTTGG
AATCTTCCAAGCCACGTCCAACACCATGTCCAGCCTTGCTGGCTTTGTCG
CAATCCCCTTGTCGACAAAGGTCATGGACATGCTCGGTGGGTCTTGGCGT
GCAATGTTCGCCAGTCTTAGCCTGTGTTACATCTCCATGACTATTGTTTT
CTGCTCCTTCGTGGAAAGCGATCGCGTTCTGGACGAAAGCAACGGCTTCC
CTTCCAAGAGCCCCCTCGTCTCCTGA

Coding sequence (CDS) from alignment at ScGOVlb_24229:587235..588560+

>Gvermi6924.t1 ID=Gvermi6924.t1|Name=Gvermi6924.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1326bp|location=Sequence derived from alignment at ScGOVlb_24229:587235..588560+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTCCCGAGCGCTACGTCATGGTCATACTGTGCGCCGTCTGCTGTTG
CATAAACTATGCTGACCGTGTCAACATCTCCGTCGCCATCATCAGCATCG
CCGAGCAGTACTCCTTCAACTTGCATGAGCAGTCTTTGATCATGTCCTAT
TTCTATCTCGGTTATTTGCCCATGAACCTGGGAGGCGCCCTTCTCTGTCG
ACGGTTTGGGGCAAAGAACGTTCTCACTTGGGGTGCAATTTTTTGGTCCT
TCTTCACCTTCATCACCCCCATCGCCTGTGGTATGGGATTCAGAGTTTTA
GTTCTTTGCCGCTTTCTCATGGGTCTCTCGGAGGGCGTTGCGTATCCGTC
CGTCTATCACTTTCTGTCCACATGGATATCGCCCACGGAAAGAGCAAGGG
GTGTTGCTCTATTGCTCACCGGCACGCATGTCGGAACAACATTGGCCCTC
ATATTGTCTCCAATAATCATCCGAAATGTCTCATGGCAGGCCATATTTTA
TTCCTTTGGCGCTCTCGGTATCGTGTGGGTTGCCGTCTGGCAAATGATTG
CCTACGACCGCTACGAGAAGGTTGATAGCTCCGCCCCGTCTGACGAGGAA
TCTTCCTCCACCTCCAGCTTAACTCCAGACGGCGCAGAGAACAAGCATGA
GCCGTCTTCGGCTCGTCAAGAACTGCGCTTGATACTCGCCATCCTTCGAA
ATAGACACACGCTAGCCGTCTGTCTTACACACGCCATGTTAGGTCTCGTG
CATTTTGTCGTTCTAAGTTGGCTCCCCTCCTATTTCAAGAACGTCTACGA
CATTCAAACCACGGCTCTTTCCTTCACTTTCATCCCTTATTTTTCAATGG
CTGTCAGTGGCAATATCGGCGGATATCTCGCCGACACTCTTTTGCATGGC
GGAATGTCTCTCTCAAGAGTTCGAAAGCTTGTTACATGCATTGCAAATCT
GGGCGCCGCTACCACTTTGCTTGCCTTTGCGACTGCAAAAACAATTGGCG
TGGCATTGGCGTACATATCTTTAAGTTTGTCCTTTATGAGCCTCAACAGC
GGCGGCGTTTCCAGTTGTTATATGGACATGGCAGCACCAAGTGTGGTTGG
AATCTTCCAAGCCACGTCCAACACCATGTCCAGCCTTGCTGGCTTTGTCG
CAATCCCCTTGTCGACAAAGGTCATGGACATGCTCGGTGGGTCTTGGCGT
GCAATGTTCGCCAGTCTTAGCCTGTGTTACATCTCCATGACTATTGTTTT
CTGCTCCTTCGTGGAAAGCGATCGCGTTCTGGACGAAAGCAACGGCTTCC
CTTCCAAGAGCCCCCTCGTCTCCTGA