Gvermi7067.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi7067.t1
Unique NameGvermi7067.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length1664
Homology
BLAST of Gvermi7067.t1 vs. uniprot
Match: A0A2V3INI9_9FLOR (C3HC-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INI9_9FLOR)

HSP 1 Score: 535 bits (1377), Expect = 1.020e-158
Identity = 424/1009 (42.02%), Postives = 569/1009 (56.39%), Query Frame = 0
Query:  659 DEPSEGLG--GSPSLIFSAPLFGMRPTGFPSQPVSFMTPPSFQRTSLSPNARPFIPAAQREAMRSAALPTEADKNDNAMADVSESVDDADVKQTTAASSAAAKDRTEVKQLFSPQQAAPSEKPKPGITPPQQSVPLSSKAPVEDEKLTKQPDSLEKVVTTDTAEKDISIAPDTPAKESRHDSDEKAAGVQAKKDKSINQSSKPSQKKVTFSLNQPKTGPVDLRTPSSHSGSAVASESGQG---RLQEQKLKEEMNDEGFLYEVNHVPLSVRIGNGSTIKRGSLSTLRLTVTKNGEAKLEMFKEGASSLLLFESLSASRSILRVRKVAHRPIVTVTVMTSNNGGTQVAKKYLIHLGHHLCDKVFKACVAHLNSSGPDKRVVSETSSSSAAMSKKNSAHGSSDGSDVHAIGTKRSAEGVKTADPKRLKT-DRRKQLQETKAKLLESLKAARMNKASGVETDRSFSGKSAGG-GVSESGKAALAMSSRPQTAQAVSRATTATPDAAK---APSQIAI--STRHGDQNAQKAKVSDLTARRASQTFEQRKHHSADNNGLSVRKKDLGKDRMEIESPKETLPIPGSLKRNK-PAGLQSVLKHAPGKRALDEEKSADAKRQRTAMERNTSAVA-ANATAQERLKALREFAKSGNRTPSTKGSMAGGISAT---GRPPLVDVEEVKRMRGVLVELTKERDEAAKHKLIAEQDKKQMVEEXXXXXXXXXXXXXXXXXXKGXXXXXXXXXXXXXXXXXX--TVAALKKAEQE-----HKEVWSKISGMMQVVNEAMRAEKVENEEREAEKKRSLSRCDHDSVEDFLCRLRTFKPSTWPV-EEAEIGALACARHGWFNSGVMEVQSSDGVTLKLGNLFDEVDRYFERVEEMKTSLVEKHALLSGWRGKQCRRDIGKELLGREALERNAEGLRKHGGLDRVRGFDKSSKNVCEVAAACGWRAGKGGFVCEWCGIVWYDELHLRDSHYRFCMFYREEFEVRRNAELLGLDWEVEGERLGWF 1642
            D PS+ +   GS +   +APLFGM+    P  PVSF +PPSFQR+ LSP+A PFIPAA R+A R+A   TE D   +   D S + +D   +Q     + A K+         P++  P        +PP  SVP  S A V +  + +            TA    S+AP                G+   +  S  + SK  ++KVTF   +  T P   +  S  S +  A +S  G   R+ EQ+LK+E  DEG +YEV+HVP+SVRIGNG+ IKR SLSTLRL ++K+GEAKLEMFKE ASSLLLFESLS +R+ +R+RKVA R ++TVT+MT+NNGG QVAKKY +HLG H+ DK+F   V HLN +GP + V S   +SS   +  +S    SD     ++  KRS E     DPKR+K  +RR+QL ETKAKLLE+LKA R NKA     D   +GKS      +     +L+ SS+ + + + +  +TA P  A    AP    I  +  H D  +  A   D TA +        K  +A      + K   G          + L  P +  R K P   Q + +  PG+     ++S + K+ R   E+  +A + +N   Q +LK LR+ A+ G           GG +AT   GR    + +EVK +R +L E    + EA K KL A +      EE    XXXXXXXXXXXXXX  XXXXXXXXXXX          V   K+AE E       E+ +++S +++ +   + A       RE   K S SRCDH++V DF  RL +FKPSTWPV E+++IGA ACARHGW+NS V  ++S+DGV L+L +L+D+VD + E V+ + T+LV++H  LSGWRGKQC RDIGKELL RE L +N   ++KH    RVRGF + +  +CE+ AACGW+       CEWCGIV   +LHLR+SHY+FCMF  E+ EVRRN ELLGLDWEVEG+RLGWF
Sbjct:  589 DTPSKDMSFKGSANTNLTAPLFGMQTMELPKFPVSFSSPPSFQRSRLSPSAPPFIPAAHRDANRAATPQTELDSTSHMDVDSSRT-EDKPTEQLKTMLAPAFKESAARGSQLKPEKICPPS----SASPP--SVPHLSSAKVSNPPVPQ------------TAGVSQSVAP---------------GGIPQSEKDSFKEESKAQERKVTFGSIETITVP---KADSRQSPTRPAQDSISGSEPRVDEQELKDEETDEGSMYEVSHVPISVRIGNGTAIKRDSLSTLRLAISKSGEAKLEMFKEAASSLLLFESLSNTRNTIRIRKVAKRTVMTVTLMTNNNGGAQVAKKYYVHLGKHIYDKLFNIFVIHLNEAGPARPVQSAPLNSSGKRAAPSSG---SDAEGTKSVPGKRSLEVTDKKDPKRVKVAERRRQLLETKAKLLENLKAVRKNKAGTGVKDHPATGKSLKRTAATPVPPPSLSTSSQLKPSVSTTPRSTAPPSGASSTPAPPATTIQGTASHSDNPSTIAHGFDSTALKTPNKNNTTKDETAVGGQAGISKLKSG----------QPLQAPSTSTRGKRPRPEQQLHRLQPGQNQSTGQESNNVKKMRVTEEKAQAAASVSNPNMQGKLKFLRDRARRGGY---------GGSAATPVAGRRDPTESDEVKNLRILLNEKISSQTEAEKQKLEAMKGMATAKEETKMAXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDERKEMENVLTAKRAESELSSRQKNELSAEVSKLLKHMETVLAA----GSPRENLNKESFSRCDHNNVSDFFDRLHSFKPSTWPVMEDSDIGARACARHGWYNSDVDVLRSTDGVELRLRDLYDDVDVHLEEVQRVTTALVQEHQFLSGWRGKQCARDIGKELLDRETLIKNVSEIQKHDVKKRVRGFGERADRLCELIAACGWKPHGKAVRCEWCGIVAVGDLHLRESHYKFCMFAEEQDEVRRNIELLGLDWEVEGDRLGWF 1534          
BLAST of Gvermi7067.t1 vs. uniprot
Match: R7QSH1_CHOCR (C3HC-type domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QSH1_CHOCR)

HSP 1 Score: 87.4 bits (215), Expect = 2.400e-13
Identity = 77/240 (32.08%), Postives = 105/240 (43.75%), Query Frame = 0
Query: 1432 EAEKKRSLSRCDHDSVEDFLCRLRTFKPSTWP--VEEAEIGALACARHGWFNSGVMEVQSSDG--VTLKLGNLFDEVDRYFERVEEMKTSLVEKHALLSGWRGKQCRRDI-----GKELLGREALERNAEGLRKHGGLDRVRGFDK----SSKNVCEV-----AAACGWRAGKGG-----FVCEWCG----IVWYD----------ELHLRDSHYRFCMFYREEFEVRRNAELLGLDWEV 1634
            EA K  SLSRC+  +V DF  RL TF+PSTW        +  + CARHGW NSG+ E+ SS+G  +T K    FD      E     K  +   H LLSGW G+    +       K       L+ NA+ L     ++ +   D     SSK++         A   W+A +G        C+WCG    +   D          E  +  SHY FC F  EE   +RNAE++ +   V
Sbjct: 1427 EAHKPASLSRCEPKNVSDFFDRLHTFRPSTWRGFARGHALSPVECARHGWHNSGIDELTSSEGSVITTKFETCFDSASMKAEIERVRKLVVGGGHRLLSGWIGESSPFEFESLEGSKRTCNAAQLKTNAKQLESTRVVEILANRDSDSGLSSKDLSAADKYGRLACYNWKA-RGSEEDLDLYCDWCGRSVLLTPEDMVRSGGKGCVEFDVATSHYVFCPFRGEE--GKRNAEVMRMSLAV 1663          
The following BLAST results are available for this feature:
BLAST of Gvermi7067.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3INI9_9FLOR1.020e-15842.02C3HC-type domain-containing protein n=1 Tax=Gracil... [more]
R7QSH1_CHOCR2.400e-1332.08C3HC-type domain-containing protein n=2 Tax=Chondr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1382..1402
NoneNo IPR availableCOILSCoilCoilcoord: 471..491
NoneNo IPR availableCOILSCoilCoilcoord: 1340..1374
NoneNo IPR availableCOILSCoilCoilcoord: 1083..1103
NoneNo IPR availableCOILSCoilCoilcoord: 1416..1436
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 507..527
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 688..708
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 431..449
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 611..631
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1131..1154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 408..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1069..1097
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 475..506
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 350..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 93..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 798..818
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1031..1257
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 460..474
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..673
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 393..407
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 247..327
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1031..1054
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1185..1218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 849..897
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 544..587
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 826..847
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 688..904
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1162..1184
IPR012935Zinc finger, C3HC-likePFAMPF07967zf-C3HCcoord: 1446..1538
e-value: 1.1E-7
score: 32.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:1435615..1440606 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7067.t1Gvermi7067.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24229 1435615..1440606 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi7067.t1 ID=Gvermi7067.t1|Name=Gvermi7067.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=1664bp
MSAEKEDAVKKVVEPDQADESLRISVQPDKDPGVIGVEDDAIDVDVVEEE
EEEQQKVTEDEDENGTDGDLRIRESSAPDTSTPGPITQADVDVIDLEETD
EDMGDRDDGEEGEEKEEGDEAGEGNEEPDGTEVDEASEIDEGNDGDDVDD
GDELDEGDEGDVGDEGEEGEEGAEDDEGAEREEGRSGVTDEEEIAEGDSL
RDGKRVGLESPEVEAQQRNLGKDGGVKHAEFVSQSAKEQPGVKPCTADAE
ELDKSIDNRTSEDESKNPAKVPPVVEEGKCHDVQDPATRGEEAKSEEFER
VETSSQDADMAAEVSNDDKHADEKLNIVEKVSPLVAQAESGVAVLPKNDA
INQAESQLESRAFTKKMASESGAPEDGTDVSDAVPNVLTTSAEEEATKKK
DVSENDAGENKASQGITDTELAGPESTSNRNDADSKGEAELKVSKDESPA
LMKNAKASDTYESSDAKPEDAMELENTEEQMDDDAEEEEHENMDDDHANE
DMELSEEEPVHEVKSGGDDESEPQVDANRSDIHTAPATEADAKTADVHVQ
KEAKQEPSLHDKKFDSTEARDMDESTNVRESKEANRTSEKQSSMGSVLIK
ATDVQMSDAITKDKQEATLPTSGTPATTPSDADHDVSRGGDSTSRLTPDN
KNGVDEATDEPSEGLGGSPSLIFSAPLFGMRPTGFPSQPVSFMTPPSFQR
TSLSPNARPFIPAAQREAMRSAALPTEADKNDNAMADVSESVDDADVKQT
TAASSAAAKDRTEVKQLFSPQQAAPSEKPKPGITPPQQSVPLSSKAPVED
EKLTKQPDSLEKVVTTDTAEKDISIAPDTPAKESRHDSDEKAAGVQAKKD
KSINQSSKPSQKKVTFSLNQPKTGPVDLRTPSSHSGSAVASESGQGRLQE
QKLKEEMNDEGFLYEVNHVPLSVRIGNGSTIKRGSLSTLRLTVTKNGEAK
LEMFKEGASSLLLFESLSASRSILRVRKVAHRPIVTVTVMTSNNGGTQVA
KKYLIHLGHHLCDKVFKACVAHLNSSGPDKRVVSETSSSSAAMSKKNSAH
GSSDGSDVHAIGTKRSAEGVKTADPKRLKTDRRKQLQETKAKLLESLKAA
RMNKASGVETDRSFSGKSAGGGVSESGKAALAMSSRPQTAQAVSRATTAT
PDAAKAPSQIAISTRHGDQNAQKAKVSDLTARRASQTFEQRKHHSADNNG
LSVRKKDLGKDRMEIESPKETLPIPGSLKRNKPAGLQSVLKHAPGKRALD
EEKSADAKRQRTAMERNTSAVAANATAQERLKALREFAKSGNRTPSTKGS
MAGGISATGRPPLVDVEEVKRMRGVLVELTKERDEAAKHKLIAEQDKKQM
VEEVEKLQKALSKASKESEEGKGEVARLVEEHKKAEKSMADTVAALKKAE
QEHKEVWSKISGMMQVVNEAMRAEKVENEEREAEKKRSLSRCDHDSVEDF
LCRLRTFKPSTWPVEEAEIGALACARHGWFNSGVMEVQSSDGVTLKLGNL
FDEVDRYFERVEEMKTSLVEKHALLSGWRGKQCRRDIGKELLGREALERN
AEGLRKHGGLDRVRGFDKSSKNVCEVAAACGWRAGKGGFVCEWCGIVWYD
ELHLRDSHYRFCMFYREEFEVRRNAELLGLDWEVEGERLGWFSGPKNGLG
MDTGSGVVAMEEG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012935Znf_C3HC-like