Gvermi6941.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6941.t1
Unique NameGvermi6941.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length167
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24229contigScGOVlb_24229:706773..707273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ07410
Preferred nameGLB3
PFAMsBac_globin
Max annot lvl35493|Streptophyta
GOsGO:0001666,GO:0003674,GO:0005344,GO:0006810,GO:0006950,GO:0008150,GO:0009628,GO:0009719,GO:0009725,GO:0009733,GO:0010033,GO:0015669,GO:0015671,GO:0015893,GO:0036293,GO:0042221,GO:0042493,GO:0050896,GO:0051179,GO:0051234,GO:0070482,GO:0140104
Evalue1.8e-42
EggNOG OGsCOG2346@1|root,2QRXE@2759|Eukaryota,37PXR@33090|Viridiplantae,3GCEI@35493|Streptophyta
DescriptionTwo-on-two hemoglobin-3
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6941Gvermi6941Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24229 706773..707273 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6941.t1.stop1Gvermi6941.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24229 706773..706775 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6941.t1.CDS1Gvermi6941.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24229 706773..707273 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6941.t1.exon1Gvermi6941.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24229 706773..707273 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6941.t1.start1Gvermi6941.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24229 707271..707273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6941.t1Gvermi6941.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24229 706773..707273 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6941.t1 ID=Gvermi6941.t1|Name=Gvermi6941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=167bp
MQKLREQAAEQSGVPYSAVERARAANLYQRLGWDRICALSHAFYDRVYGD
ELWFRRLFANTTREAAMRNQREFLAQEFGGPPMYGERKGHTAILGRHGPY
AVDGRAAERWLQHMNAAVHSVIEEQELQEIMMRYFRHMAWYIVFGRQLVN
GMRTVGYYGKHTEGQV*
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spliced messenger RNA

>Gvermi6941.t1 ID=Gvermi6941.t1|Name=Gvermi6941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_24229:706773..707273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAACTTCGCGAACAGGCGGCCGAACAAAGCGGCGTACCGTACAG
CGCCGTAGAACGAGCTCGCGCTGCAAACCTGTATCAAAGACTAGGCTGGG
ACAGAATATGCGCACTGTCACATGCTTTCTACGACAGGGTTTACGGCGAT
GAGCTATGGTTCCGGCGCTTGTTTGCCAACACAACCCGCGAAGCGGCCAT
GAGAAACCAGCGCGAGTTTCTGGCACAGGAATTTGGCGGACCACCCATGT
ACGGGGAACGCAAGGGTCATACAGCCATTCTCGGACGACATGGCCCTTAC
GCCGTGGATGGTCGGGCTGCGGAGCGATGGTTGCAGCATATGAATGCGGC
AGTACACTCTGTAATTGAGGAACAGGAGCTTCAGGAAATCATGATGAGAT
ACTTCAGACATATGGCGTGGTATATAGTGTTTGGGAGGCAGCTTGTAAAT
GGCATGAGGACGGTTGGTTATTACGGGAAGCATACCGAGGGTCAGGTCTA
G
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protein sequence of Gvermi6941.t1

>Gvermi6941.t1 ID=Gvermi6941.t1|Name=Gvermi6941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=167bp
MQKLREQAAEQSGVPYSAVERARAANLYQRLGWDRICALSHAFYDRVYGD
ELWFRRLFANTTREAAMRNQREFLAQEFGGPPMYGERKGHTAILGRHGPY
AVDGRAAERWLQHMNAAVHSVIEEQELQEIMMRYFRHMAWYIVFGRQLVN
GMRTVGYYGKHTEGQV*
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mRNA from alignment at ScGOVlb_24229:706773..707273-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6941.t1 ID=Gvermi6941.t1|Name=Gvermi6941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=501bp|location=Sequence derived from alignment at ScGOVlb_24229:706773..707273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAAACTTCGCGAACAGGCGGCCGAACAAAGCGGCGTACCGTACAG
CGCCGTAGAACGAGCTCGCGCTGCAAACCTGTATCAAAGACTAGGCTGGG
ACAGAATATGCGCACTGTCACATGCTTTCTACGACAGGGTTTACGGCGAT
GAGCTATGGTTCCGGCGCTTGTTTGCCAACACAACCCGCGAAGCGGCCAT
GAGAAACCAGCGCGAGTTTCTGGCACAGGAATTTGGCGGACCACCCATGT
ACGGGGAACGCAAGGGTCATACAGCCATTCTCGGACGACATGGCCCTTAC
GCCGTGGATGGTCGGGCTGCGGAGCGATGGTTGCAGCATATGAATGCGGC
AGTACACTCTGTAATTGAGGAACAGGAGCTTCAGGAAATCATGATGAGAT
ACTTCAGACATATGGCGTGGTATATAGTGTTTGGGAGGCAGCTTGTAAAT
GGCATGAGGACGGTTGGTTATTACGGGAAGCATACCGAGGGTCAGGTCTA
G
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Coding sequence (CDS) from alignment at ScGOVlb_24229:706773..707273-

>Gvermi6941.t1 ID=Gvermi6941.t1|Name=Gvermi6941.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=501bp|location=Sequence derived from alignment at ScGOVlb_24229:706773..707273- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCAGAAACTTCGCGAACAGGCGGCCGAACAAAGCGGCGTACCGTACAG
CGCCGTAGAACGAGCTCGCGCTGCAAACCTGTATCAAAGACTAGGCTGGG
ACAGAATATGCGCACTGTCACATGCTTTCTACGACAGGGTTTACGGCGAT
GAGCTATGGTTCCGGCGCTTGTTTGCCAACACAACCCGCGAAGCGGCCAT
GAGAAACCAGCGCGAGTTTCTGGCACAGGAATTTGGCGGACCACCCATGT
ACGGGGAACGCAAGGGTCATACAGCCATTCTCGGACGACATGGCCCTTAC
GCCGTGGATGGTCGGGCTGCGGAGCGATGGTTGCAGCATATGAATGCGGC
AGTACACTCTGTAATTGAGGAACAGGAGCTTCAGGAAATCATGATGAGAT
ACTTCAGACATATGGCGTGGTATATAGTGTTTGGGAGGCAGCTTGTAAAT
GGCATGAGGACGGTTGGTTATTACGGGAAGCATACCGAGGGTCAGGTCTA
G
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