Gvermi5467.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5467.t1
Unique Name	Gvermi5467.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	297

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:2161254..2162144 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4555.Si010629m
PFAMs	Syntaxin-18_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08492
KEGG Pathway	ko04130,ko04145,map04130,map04145
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006810,GO:0006888,GO:0006890,GO:0008150,GO:0012505,GO:0016020,GO:0016192,GO:0031201,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0098796
Evalue	1.08e-22
EggNOG OGs	KOG3894@1\|root,KOG3894@2759\|Eukaryota,37NQG@33090\|Viridiplantae,3GDIY@35493\|Streptophyta,3KVE8@4447\|Liliopsida,3IF1G@38820\|Poales
Description	SNARE-complex protein Syntaxin-18 N-terminus
COG category	U
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5467	Gvermi5467	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24228 2161254..2162144 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5467.t1.stop1	Gvermi5467.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24228 2161254..2161256 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5467.t1.CDS1	Gvermi5467.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24228 2161254..2162144 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5467.t1.exon1	Gvermi5467.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24228 2161254..2162144 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5467.t1.start1	Gvermi5467.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24228 2162142..2162144 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5467.t1	Gvermi5467.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24228 2161254..2162144 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24228:2161254..2162144-
coding sequence from alignment at ScGOVlb_24228:2161254..2162144-

mRNA sequence

>Gvermi5467.t1 ID=Gvermi5467.t1|Name=Gvermi5467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp
MMLPVDRTGELLSALAAHHRLKDGAVPIKQSSEVEPHAFTKLAIRLTSQI
IDMKSFIEKCKARYLDFSARGMVDGERDRVDSAIAQFLRAAVNQIEKLKE
TAVMELQKSPGASFPTHRLGVVVILNENLQSVCRLSEGLRGARIREAIAA
KERVKIQYDPAIAQEMARERRKVAEEEDSDQITSLEQQFAQENASLVSEL
VETRERVKEAERTIFEIANLNHVFATKVLEQAREIEALYNLAVDATVHLE
RGNRELRKMKRQRPVLKYGLAMLALLLTFALLFMEWMSRRRSLFFF*

spliced messenger RNA

>Gvermi5467.t1 ID=Gvermi5467.t1|Name=Gvermi5467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_24228:2161254..2162144- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTCCCCGTCGATCGAACAGGTGAGCTGCTGTCTGCTCTAGCCGC
CCATCATCGACTGAAGGATGGAGCAGTTCCCATAAAGCAGAGCAGCGAGG
TGGAACCACACGCATTCACCAAGCTTGCGATTCGACTTACCTCTCAAATT
ATTGATATGAAATCCTTCATTGAAAAGTGCAAAGCTCGATATCTGGACTT
CTCTGCACGCGGTATGGTGGACGGGGAACGAGATCGGGTTGACTCTGCAA
TAGCGCAGTTCTTGCGCGCGGCGGTGAACCAAATCGAAAAACTAAAAGAA
ACTGCCGTTATGGAGCTGCAGAAAAGCCCGGGTGCATCATTTCCCACACA
TAGGTTGGGTGTTGTAGTCATTCTCAACGAGAATTTGCAATCTGTGTGTC
GGCTTTCTGAGGGACTTCGAGGGGCTCGCATACGAGAGGCCATTGCCGCA
AAAGAACGAGTTAAAATACAATACGATCCAGCCATAGCTCAAGAGATGGC
CCGCGAACGAAGAAAAGTGGCGGAAGAGGAAGACAGTGATCAGATAACCT
CCCTGGAGCAACAGTTTGCTCAGGAGAATGCATCTCTCGTGAGCGAGCTA
GTCGAAACCAGGGAGAGAGTTAAGGAGGCAGAGCGAACAATCTTCGAAAT
TGCAAACTTGAATCATGTTTTTGCAACCAAAGTATTGGAACAAGCTAGAG
AAATTGAAGCTTTATATAATCTTGCCGTAGATGCCACGGTTCATTTAGAA
CGTGGCAATCGGGAGCTGAGAAAAATGAAGCGGCAGCGACCAGTCTTGAA
GTATGGGTTGGCCATGTTGGCGTTGTTGCTAACATTCGCATTACTGTTCA
TGGAATGGATGAGTCGCAGACGATCATTATTTTTCTTCTAA

protein sequence of Gvermi5467.t1

>Gvermi5467.t1 ID=Gvermi5467.t1|Name=Gvermi5467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MMLPVDRTGELLSALAAHHRLKDGAVPIKQSSEVEPHAFTKLAIRLTSQI
IDMKSFIEKCKARYLDFSARGMVDGERDRVDSAIAQFLRAAVNQIEKLKE
TAVMELQKSPGASFPTHRLGVVVILNENLQSVCRLSEGLRGARIREAIAA
KERVKIQYDPAIAQEMARERRKVAEEEDSDQITSLEQQFAQENASLVSEL
VETRERVKEAERTIFEIANLNHVFATKVLEQAREIEALYNLAVDATVHLE
RGNRELRKMKRQRPVLKYGLAMLALLLTFALLFMEWMSRRRSLFFF*

mRNA from alignment at ScGOVlb_24228:2161254..2162144-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5467.t1 ID=Gvermi5467.t1|Name=Gvermi5467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_24228:2161254..2162144- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCCCCGTCGATCGAACAGGTGAGCTGCTGTCTGCTCTAGCCGC
CCATCATCGACTGAAGGATGGAGCAGTTCCCATAAAGCAGAGCAGCGAGG
TGGAACCACACGCATTCACCAAGCTTGCGATTCGACTTACCTCTCAAATT
ATTGATATGAAATCCTTCATTGAAAAGTGCAAAGCTCGATATCTGGACTT
CTCTGCACGCGGTATGGTGGACGGGGAACGAGATCGGGTTGACTCTGCAA
TAGCGCAGTTCTTGCGCGCGGCGGTGAACCAAATCGAAAAACTAAAAGAA
ACTGCCGTTATGGAGCTGCAGAAAAGCCCGGGTGCATCATTTCCCACACA
TAGGTTGGGTGTTGTAGTCATTCTCAACGAGAATTTGCAATCTGTGTGTC
GGCTTTCTGAGGGACTTCGAGGGGCTCGCATACGAGAGGCCATTGCCGCA
AAAGAACGAGTTAAAATACAATACGATCCAGCCATAGCTCAAGAGATGGC
CCGCGAACGAAGAAAAGTGGCGGAAGAGGAAGACAGTGATCAGATAACCT
CCCTGGAGCAACAGTTTGCTCAGGAGAATGCATCTCTCGTGAGCGAGCTA
GTCGAAACCAGGGAGAGAGTTAAGGAGGCAGAGCGAACAATCTTCGAAAT
TGCAAACTTGAATCATGTTTTTGCAACCAAAGTATTGGAACAAGCTAGAG
AAATTGAAGCTTTATATAATCTTGCCGTAGATGCCACGGTTCATTTAGAA
CGTGGCAATCGGGAGCTGAGAAAAATGAAGCGGCAGCGACCAGTCTTGAA
GTATGGGTTGGCCATGTTGGCGTTGTTGCTAACATTCGCATTACTGTTCA
TGGAATGGATGAGTCGCAGACGATCATTATTTTTCTTCTAA

Coding sequence (CDS) from alignment at ScGOVlb_24228:2161254..2162144-

>Gvermi5467.t1 ID=Gvermi5467.t1|Name=Gvermi5467.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=891bp|location=Sequence derived from alignment at ScGOVlb_24228:2161254..2162144- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCTCCCCGTCGATCGAACAGGTGAGCTGCTGTCTGCTCTAGCCGC
CCATCATCGACTGAAGGATGGAGCAGTTCCCATAAAGCAGAGCAGCGAGG
TGGAACCACACGCATTCACCAAGCTTGCGATTCGACTTACCTCTCAAATT
ATTGATATGAAATCCTTCATTGAAAAGTGCAAAGCTCGATATCTGGACTT
CTCTGCACGCGGTATGGTGGACGGGGAACGAGATCGGGTTGACTCTGCAA
TAGCGCAGTTCTTGCGCGCGGCGGTGAACCAAATCGAAAAACTAAAAGAA
ACTGCCGTTATGGAGCTGCAGAAAAGCCCGGGTGCATCATTTCCCACACA
TAGGTTGGGTGTTGTAGTCATTCTCAACGAGAATTTGCAATCTGTGTGTC
GGCTTTCTGAGGGACTTCGAGGGGCTCGCATACGAGAGGCCATTGCCGCA
AAAGAACGAGTTAAAATACAATACGATCCAGCCATAGCTCAAGAGATGGC
CCGCGAACGAAGAAAAGTGGCGGAAGAGGAAGACAGTGATCAGATAACCT
CCCTGGAGCAACAGTTTGCTCAGGAGAATGCATCTCTCGTGAGCGAGCTA
GTCGAAACCAGGGAGAGAGTTAAGGAGGCAGAGCGAACAATCTTCGAAAT
TGCAAACTTGAATCATGTTTTTGCAACCAAAGTATTGGAACAAGCTAGAG
AAATTGAAGCTTTATATAATCTTGCCGTAGATGCCACGGTTCATTTAGAA
CGTGGCAATCGGGAGCTGAGAAAAATGAAGCGGCAGCGACCAGTCTTGAA
GTATGGGTTGGCCATGTTGGCGTTGTTGCTAACATTCGCATTACTGTTCA
TGGAATGGATGAGTCGCAGACGATCATTATTTTTCTTCTAA