Gvermi5219.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5219.t1
Unique NameGvermi5219.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length300
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:672057..672956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5219Gvermi5219Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 672057..672956 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5219.t1.stop1Gvermi5219.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 672057..672059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5219.t1.CDS1Gvermi5219.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 672057..672956 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5219.t1.exon1Gvermi5219.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 672057..672956 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5219.t1.start1Gvermi5219.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 672954..672956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5219.t1Gvermi5219.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 672057..672956 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5219.t1 ID=Gvermi5219.t1|Name=Gvermi5219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=300bp
MTFVASALLSAAFLAVLVSRAHAAEGFLAPCRADSDCRGSRQCRKVTSVE
LDDISADKLFASSSQSCDDDAEYCMCFPVSGVKGLTVCNEDDDCEEEGES
CWEGPNVCAFQPQIEALEGVEEKGQDALCLSSKDCSSDRQCVRVSSIDIL
PLSICLAKLSPPPSSAEANGDGDGEGTSDDGEGGDSSEVCIAAQSLSHLA
PHELLYTKHVSARVLCDAHQSCATAGHMVRYRGEVMMMKTYCARTGGCTR
SIMLVNSPRYRRALQIASDTPHLAFTALAARYGTSAEEHVLRTAVRFGL*
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spliced messenger RNA

>Gvermi5219.t1 ID=Gvermi5219.t1|Name=Gvermi5219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=900bp|location=Sequence derived from alignment at ScGOVlb_24228:672057..672956- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTCGTTGCCTCCGCTCTGCTTTCCGCCGCCTTCCTCGCCGTGCT
GGTCTCGCGTGCGCACGCCGCCGAAGGCTTTCTGGCGCCGTGTCGCGCCG
ATTCGGACTGTCGTGGTTCGCGCCAATGTCGCAAAGTCACCAGTGTGGAG
TTGGACGACATCAGCGCGGACAAATTGTTTGCCTCCAGCAGCCAGAGTTG
TGACGATGATGCCGAGTACTGCATGTGCTTTCCCGTCTCCGGAGTGAAGG
GCTTAACCGTTTGCAACGAAGATGATGACTGTGAAGAGGAGGGGGAAAGC
TGCTGGGAGGGACCAAACGTGTGTGCCTTTCAACCCCAAATTGAAGCTTT
GGAGGGAGTTGAAGAAAAGGGCCAGGATGCCTTGTGTCTGTCCTCAAAAG
ATTGCTCATCTGACCGTCAATGTGTCCGCGTTTCCTCTATTGATATTCTC
CCTCTAAGCATATGTCTCGCCAAGCTCTCACCGCCTCCGTCGTCCGCTGA
AGCCAACGGCGATGGCGATGGCGAGGGCACTTCAGATGACGGTGAAGGAG
GTGATTCCTCCGAGGTTTGCATTGCTGCCCAGTCTCTTTCGCACCTCGCA
CCGCACGAGCTGCTGTACACCAAGCATGTCAGCGCGCGCGTGCTGTGCGA
CGCGCACCAAAGCTGCGCCACCGCGGGCCACATGGTGCGCTACCGCGGCG
AGGTGATGATGATGAAAACGTACTGCGCGCGCACCGGCGGCTGCACGCGC
TCCATCATGCTCGTCAACAGTCCGCGTTATCGCCGAGCTCTGCAAATTGC
GTCAGACACGCCGCACCTGGCGTTCACGGCGCTCGCCGCGCGATACGGGA
CCAGCGCCGAGGAACACGTGCTTCGCACCGCTGTTCGCTTCGGGCTGTGA
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protein sequence of Gvermi5219.t1

>Gvermi5219.t1 ID=Gvermi5219.t1|Name=Gvermi5219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=300bp
MTFVASALLSAAFLAVLVSRAHAAEGFLAPCRADSDCRGSRQCRKVTSVE
LDDISADKLFASSSQSCDDDAEYCMCFPVSGVKGLTVCNEDDDCEEEGES
CWEGPNVCAFQPQIEALEGVEEKGQDALCLSSKDCSSDRQCVRVSSIDIL
PLSICLAKLSPPPSSAEANGDGDGEGTSDDGEGGDSSEVCIAAQSLSHLA
PHELLYTKHVSARVLCDAHQSCATAGHMVRYRGEVMMMKTYCARTGGCTR
SIMLVNSPRYRRALQIASDTPHLAFTALAARYGTSAEEHVLRTAVRFGL*
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mRNA from alignment at ScGOVlb_24228:672057..672956-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5219.t1 ID=Gvermi5219.t1|Name=Gvermi5219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=900bp|location=Sequence derived from alignment at ScGOVlb_24228:672057..672956- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTTCGTTGCCTCCGCTCTGCTTTCCGCCGCCTTCCTCGCCGTGCT
GGTCTCGCGTGCGCACGCCGCCGAAGGCTTTCTGGCGCCGTGTCGCGCCG
ATTCGGACTGTCGTGGTTCGCGCCAATGTCGCAAAGTCACCAGTGTGGAG
TTGGACGACATCAGCGCGGACAAATTGTTTGCCTCCAGCAGCCAGAGTTG
TGACGATGATGCCGAGTACTGCATGTGCTTTCCCGTCTCCGGAGTGAAGG
GCTTAACCGTTTGCAACGAAGATGATGACTGTGAAGAGGAGGGGGAAAGC
TGCTGGGAGGGACCAAACGTGTGTGCCTTTCAACCCCAAATTGAAGCTTT
GGAGGGAGTTGAAGAAAAGGGCCAGGATGCCTTGTGTCTGTCCTCAAAAG
ATTGCTCATCTGACCGTCAATGTGTCCGCGTTTCCTCTATTGATATTCTC
CCTCTAAGCATATGTCTCGCCAAGCTCTCACCGCCTCCGTCGTCCGCTGA
AGCCAACGGCGATGGCGATGGCGAGGGCACTTCAGATGACGGTGAAGGAG
GTGATTCCTCCGAGGTTTGCATTGCTGCCCAGTCTCTTTCGCACCTCGCA
CCGCACGAGCTGCTGTACACCAAGCATGTCAGCGCGCGCGTGCTGTGCGA
CGCGCACCAAAGCTGCGCCACCGCGGGCCACATGGTGCGCTACCGCGGCG
AGGTGATGATGATGAAAACGTACTGCGCGCGCACCGGCGGCTGCACGCGC
TCCATCATGCTCGTCAACAGTCCGCGTTATCGCCGAGCTCTGCAAATTGC
GTCAGACACGCCGCACCTGGCGTTCACGGCGCTCGCCGCGCGATACGGGA
CCAGCGCCGAGGAACACGTGCTTCGCACCGCTGTTCGCTTCGGGCTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:672057..672956-

>Gvermi5219.t1 ID=Gvermi5219.t1|Name=Gvermi5219.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=900bp|location=Sequence derived from alignment at ScGOVlb_24228:672057..672956- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGTTCGTTGCCTCCGCTCTGCTTTCCGCCGCCTTCCTCGCCGTGCT
GGTCTCGCGTGCGCACGCCGCCGAAGGCTTTCTGGCGCCGTGTCGCGCCG
ATTCGGACTGTCGTGGTTCGCGCCAATGTCGCAAAGTCACCAGTGTGGAG
TTGGACGACATCAGCGCGGACAAATTGTTTGCCTCCAGCAGCCAGAGTTG
TGACGATGATGCCGAGTACTGCATGTGCTTTCCCGTCTCCGGAGTGAAGG
GCTTAACCGTTTGCAACGAAGATGATGACTGTGAAGAGGAGGGGGAAAGC
TGCTGGGAGGGACCAAACGTGTGTGCCTTTCAACCCCAAATTGAAGCTTT
GGAGGGAGTTGAAGAAAAGGGCCAGGATGCCTTGTGTCTGTCCTCAAAAG
ATTGCTCATCTGACCGTCAATGTGTCCGCGTTTCCTCTATTGATATTCTC
CCTCTAAGCATATGTCTCGCCAAGCTCTCACCGCCTCCGTCGTCCGCTGA
AGCCAACGGCGATGGCGATGGCGAGGGCACTTCAGATGACGGTGAAGGAG
GTGATTCCTCCGAGGTTTGCATTGCTGCCCAGTCTCTTTCGCACCTCGCA
CCGCACGAGCTGCTGTACACCAAGCATGTCAGCGCGCGCGTGCTGTGCGA
CGCGCACCAAAGCTGCGCCACCGCGGGCCACATGGTGCGCTACCGCGGCG
AGGTGATGATGATGAAAACGTACTGCGCGCGCACCGGCGGCTGCACGCGC
TCCATCATGCTCGTCAACAGTCCGCGTTATCGCCGAGCTCTGCAAATTGC
GTCAGACACGCCGCACCTGGCGTTCACGGCGCTCGCCGCGCGATACGGGA
CCAGCGCCGAGGAACACGTGCTTCGCACCGCTGTTCGCTTCGGGCTGTGA
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