Gvermi5210.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5210.t1
Unique Name	Gvermi5210.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	390

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:614198..615367 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	296587.XP_002499539.1
PFAMs	Cupin_8
Max annot lvl	3041\|Chlorophyta
KEGG ko	ko:K10277
Evalue	2.12e-44
EggNOG OGs	KOG2132@1\|root,KOG2132@2759\|Eukaryota,37RJP@33090\|Viridiplantae,34KIA@3041\|Chlorophyta
EC	1.14.11.27
Description	A domain family that is part of the cupin metalloenzyme superfamily.
COG category	BT
BRITE	ko00000,ko01000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5210	Gvermi5210	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_24228 614198..615367 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5210.t1.start1	Gvermi5210.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_24228 614198..614200 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5210.t1.CDS1	Gvermi5210.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_24228 614198..615367 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5210.t1.exon1	Gvermi5210.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_24228 614198..615367 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5210.t1.stop1	Gvermi5210.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_24228 615365..615367 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5210.t1	Gvermi5210.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_24228 614198..615367 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_24228:614198..615367+
coding sequence from alignment at ScGOVlb_24228:614198..615367+

mRNA sequence

>Gvermi5210.t1 ID=Gvermi5210.t1|Name=Gvermi5210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=390bp
MEEGDQNSEPRIQLLLQRVTKLVLSRKKQVEEELRACGRSRLARMVCRLP
SLEPEQLEKIAMKDLPIASGALALAAASSCVVHATNRRLNDACRSADVAL
IMLGIPLGQPLLDFIILVEQDSLLDNSLFIEEGAVFAEDSDDDESIESSV
MKDMNERCAEVVEKYFSVADFAKYFNNDEPVVIRKLASSWPSVQKWNDPT
YLGNRYGHRTVPVEHTSSAGRMQERFCSIAEVVNMMTRKKGSAIQDNVYM
AQHPILDYIPDMRDGIRTPPYLTVVGKTKADLVNMWIGSSGTGTKLHFDS
ADNILVQLVGRKKIVLIDAGQSELLYQRNPTDNISPVDITKPDLEKFPRF
AEVHGMTVYLEPGDAVYIPAQYWHWVRAISSSISVNFWF*

spliced messenger RNA

>Gvermi5210.t1 ID=Gvermi5210.t1|Name=Gvermi5210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at ScGOVlb_24228:614198..615367+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAAGGCGACCAAAACTCCGAGCCTCGTATTCAACTTCTTCTGCA
ACGTGTTACAAAGCTCGTTCTTTCTCGTAAGAAGCAAGTTGAAGAAGAGC
TGCGGGCTTGCGGGCGTTCCCGATTAGCTCGAATGGTTTGTCGCCTTCCG
TCTTTGGAACCAGAGCAGCTGGAAAAGATCGCAATGAAAGATTTGCCTAT
TGCCAGTGGCGCACTTGCATTGGCTGCAGCAAGTTCCTGTGTTGTACACG
CGACAAATCGACGCCTCAACGATGCTTGTCGAAGTGCGGACGTGGCTCTC
ATTATGTTGGGCATTCCACTAGGCCAACCACTTTTGGACTTTATTATCCT
AGTTGAACAAGACTCTCTTCTGGACAATTCTCTATTTATCGAAGAGGGAG
CTGTTTTTGCTGAAGATAGCGATGACGATGAAAGTATTGAGTCCTCTGTG
ATGAAGGACATGAACGAAAGATGTGCAGAAGTTGTTGAAAAGTACTTTAG
TGTGGCAGACTTCGCGAAGTACTTCAATAATGACGAACCTGTTGTTATTA
GAAAACTGGCTTCGTCTTGGCCATCTGTGCAGAAGTGGAATGATCCGACA
TATTTAGGAAATCGTTATGGACATCGAACTGTTCCCGTGGAACACACTTC
ATCCGCAGGCAGGATGCAAGAAAGGTTTTGTTCAATAGCAGAAGTTGTGA
ACATGATGACACGGAAAAAAGGCTCAGCAATTCAGGATAATGTGTATATG
GCTCAACATCCGATACTTGATTACATCCCAGACATGAGAGACGGTATCAG
AACACCTCCGTACTTGACTGTAGTCGGTAAAACCAAGGCTGACCTTGTAA
ACATGTGGATTGGATCATCGGGGACCGGGACGAAACTGCACTTCGATTCT
GCAGATAATATACTTGTCCAACTCGTAGGGCGCAAAAAGATAGTGTTAAT
CGACGCAGGTCAGAGCGAACTGCTTTACCAAAGAAACCCGACTGACAATA
TTTCCCCGGTGGACATTACAAAACCCGACCTAGAAAAATTTCCTCGCTTT
GCAGAAGTGCATGGCATGACTGTATATCTGGAGCCAGGAGATGCAGTGTA
TATACCAGCTCAGTATTGGCACTGGGTTCGTGCTATTTCGTCATCAATAT
CAGTAAACTTCTGGTTCTGA

protein sequence of Gvermi5210.t1

>Gvermi5210.t1 ID=Gvermi5210.t1|Name=Gvermi5210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=390bp
MEEGDQNSEPRIQLLLQRVTKLVLSRKKQVEEELRACGRSRLARMVCRLP
SLEPEQLEKIAMKDLPIASGALALAAASSCVVHATNRRLNDACRSADVAL
IMLGIPLGQPLLDFIILVEQDSLLDNSLFIEEGAVFAEDSDDDESIESSV
MKDMNERCAEVVEKYFSVADFAKYFNNDEPVVIRKLASSWPSVQKWNDPT
YLGNRYGHRTVPVEHTSSAGRMQERFCSIAEVVNMMTRKKGSAIQDNVYM
AQHPILDYIPDMRDGIRTPPYLTVVGKTKADLVNMWIGSSGTGTKLHFDS
ADNILVQLVGRKKIVLIDAGQSELLYQRNPTDNISPVDITKPDLEKFPRF
AEVHGMTVYLEPGDAVYIPAQYWHWVRAISSSISVNFWF*

mRNA from alignment at ScGOVlb_24228:614198..615367+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5210.t1 ID=Gvermi5210.t1|Name=Gvermi5210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at ScGOVlb_24228:614198..615367+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGAAGGCGACCAAAACTCCGAGCCTCGTATTCAACTTCTTCTGCA
ACGTGTTACAAAGCTCGTTCTTTCTCGTAAGAAGCAAGTTGAAGAAGAGC
TGCGGGCTTGCGGGCGTTCCCGATTAGCTCGAATGGTTTGTCGCCTTCCG
TCTTTGGAACCAGAGCAGCTGGAAAAGATCGCAATGAAAGATTTGCCTAT
TGCCAGTGGCGCACTTGCATTGGCTGCAGCAAGTTCCTGTGTTGTACACG
CGACAAATCGACGCCTCAACGATGCTTGTCGAAGTGCGGACGTGGCTCTC
ATTATGTTGGGCATTCCACTAGGCCAACCACTTTTGGACTTTATTATCCT
AGTTGAACAAGACTCTCTTCTGGACAATTCTCTATTTATCGAAGAGGGAG
CTGTTTTTGCTGAAGATAGCGATGACGATGAAAGTATTGAGTCCTCTGTG
ATGAAGGACATGAACGAAAGATGTGCAGAAGTTGTTGAAAAGTACTTTAG
TGTGGCAGACTTCGCGAAGTACTTCAATAATGACGAACCTGTTGTTATTA
GAAAACTGGCTTCGTCTTGGCCATCTGTGCAGAAGTGGAATGATCCGACA
TATTTAGGAAATCGTTATGGACATCGAACTGTTCCCGTGGAACACACTTC
ATCCGCAGGCAGGATGCAAGAAAGGTTTTGTTCAATAGCAGAAGTTGTGA
ACATGATGACACGGAAAAAAGGCTCAGCAATTCAGGATAATGTGTATATG
GCTCAACATCCGATACTTGATTACATCCCAGACATGAGAGACGGTATCAG
AACACCTCCGTACTTGACTGTAGTCGGTAAAACCAAGGCTGACCTTGTAA
ACATGTGGATTGGATCATCGGGGACCGGGACGAAACTGCACTTCGATTCT
GCAGATAATATACTTGTCCAACTCGTAGGGCGCAAAAAGATAGTGTTAAT
CGACGCAGGTCAGAGCGAACTGCTTTACCAAAGAAACCCGACTGACAATA
TTTCCCCGGTGGACATTACAAAACCCGACCTAGAAAAATTTCCTCGCTTT
GCAGAAGTGCATGGCATGACTGTATATCTGGAGCCAGGAGATGCAGTGTA
TATACCAGCTCAGTATTGGCACTGGGTTCGTGCTATTTCGTCATCAATAT
CAGTAAACTTCTGGTTCTGA

Coding sequence (CDS) from alignment at ScGOVlb_24228:614198..615367+

>Gvermi5210.t1 ID=Gvermi5210.t1|Name=Gvermi5210.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1170bp|location=Sequence derived from alignment at ScGOVlb_24228:614198..615367+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAAGAAGGCGACCAAAACTCCGAGCCTCGTATTCAACTTCTTCTGCA
ACGTGTTACAAAGCTCGTTCTTTCTCGTAAGAAGCAAGTTGAAGAAGAGC
TGCGGGCTTGCGGGCGTTCCCGATTAGCTCGAATGGTTTGTCGCCTTCCG
TCTTTGGAACCAGAGCAGCTGGAAAAGATCGCAATGAAAGATTTGCCTAT
TGCCAGTGGCGCACTTGCATTGGCTGCAGCAAGTTCCTGTGTTGTACACG
CGACAAATCGACGCCTCAACGATGCTTGTCGAAGTGCGGACGTGGCTCTC
ATTATGTTGGGCATTCCACTAGGCCAACCACTTTTGGACTTTATTATCCT
AGTTGAACAAGACTCTCTTCTGGACAATTCTCTATTTATCGAAGAGGGAG
CTGTTTTTGCTGAAGATAGCGATGACGATGAAAGTATTGAGTCCTCTGTG
ATGAAGGACATGAACGAAAGATGTGCAGAAGTTGTTGAAAAGTACTTTAG
TGTGGCAGACTTCGCGAAGTACTTCAATAATGACGAACCTGTTGTTATTA
GAAAACTGGCTTCGTCTTGGCCATCTGTGCAGAAGTGGAATGATCCGACA
TATTTAGGAAATCGTTATGGACATCGAACTGTTCCCGTGGAACACACTTC
ATCCGCAGGCAGGATGCAAGAAAGGTTTTGTTCAATAGCAGAAGTTGTGA
ACATGATGACACGGAAAAAAGGCTCAGCAATTCAGGATAATGTGTATATG
GCTCAACATCCGATACTTGATTACATCCCAGACATGAGAGACGGTATCAG
AACACCTCCGTACTTGACTGTAGTCGGTAAAACCAAGGCTGACCTTGTAA
ACATGTGGATTGGATCATCGGGGACCGGGACGAAACTGCACTTCGATTCT
GCAGATAATATACTTGTCCAACTCGTAGGGCGCAAAAAGATAGTGTTAAT
CGACGCAGGTCAGAGCGAACTGCTTTACCAAAGAAACCCGACTGACAATA
TTTCCCCGGTGGACATTACAAAACCCGACCTAGAAAAATTTCCTCGCTTT
GCAGAAGTGCATGGCATGACTGTATATCTGGAGCCAGGAGATGCAGTGTA
TATACCAGCTCAGTATTGGCACTGGGTTCGTGCTATTTCGTCATCAATAT
CAGTAAACTTCTGGTTCTGA