Gvermi5460.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5460.t1
Unique NameGvermi5460.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length221
Homology
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7Q2U6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2U6_CHOCR)

HSP 1 Score: 115 bits (288), Expect = 1.350e-26
Identity = 54/117 (46.15%), Postives = 79/117 (67.52%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVRATAHPVDGPQAPKATQAHRSILGRDTEGIELIGPK 117
            +LG++ + TTA HPQTN Q+ RFN+T+A+RL+HYV++HQ+D D YV PLTY Y +Q+H+STGT PF+L+L+R+PP   +   ++A P      P + Q  R  L R  + +   G K
Sbjct:  120 LLGIRHVLTTAYHPQTNGQAERFNRTLATRLRHYVSEHQRDWDDYVQPLTYAYNMQVHKSTGTTPFDLVLTRHPPGISVQAPSSAIPSPNGSEPTSAQMKRITLQRVRKILSRAGTK 236          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QR94_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR94_CHOCR)

HSP 1 Score: 109 bits (273), Expect = 5.140e-24
Identity = 49/98 (50.00%), Postives = 73/98 (74.49%), Query Frame = 0
Query:    2 LGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVRATAHPVDGPQAPKATQA 99
            LG++ + TTA HPQTN Q+ RFN+T+A+RL+HYV++HQ+D D YV PLTY Y +Q+H+ST T PF+L+L+R+PP   ++V+A +  +  P   + T A
Sbjct:  505 LGIRHVLTTAYHPQTNGQAERFNRTLATRLRHYVSEHQRDWDDYVQPLTYAYNMQVHKSTSTTPFDLILTRHPPG--ISVQAPSSAIPSPNGSEPTSA 600          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7Q4X3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4X3_CHOCR)

HSP 1 Score: 100 bits (248), Expect = 6.690e-21
Identity = 78/252 (30.95%), Postives = 114/252 (45.24%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVRATAHPVDGPQAPKATQAHRSILGRDTEGIELIGPKDVVSRER-----ETKV---PKPIASKILATPPPG------SRAELCNPATSRITIPLNTRNLITPLG-------EPLLEAPDG----------------IMTPEGDILYAVDHTVSHRQTPAGILYRVCWIGYTS 215
            +LG++   TTA HPQ+N Q+ RFN+T+  RL+HYV +HQ+D D Y+ PLT+ Y  Q+HRST T PF+L+L+R PPS ++       PV         Q  R+ L +  + ++    K   S++R     + KV   P  +A   +    P        R         R+    +T  LI   G       + + + P G                  TP  +  Y VD  V HR T  G  Y+V W GY +
Sbjct:  202 LLGVRHYLTTAYHPQSNGQTERFNRTLVQRLRHYVEEHQRDWDDYLQPLTFAYNTQVHRSTETTPFDLVLTR-PPSGLILPEDPRTPV---------QYKRATLRKLRDALDRARTKLSASQKRYKDDFDKKVRFRPVVVAGDFVYVDRPPRPLTSVERRTRAQEGPFRVRSATDTTVLIEQDGVENRVSIDRVTKMPRGPGDTVASAIPSASDAQTTTPRAE--YVVDRIVGHRMTRGGTEYKVRWYGYAA 441          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QJ93_CHOCR (Integrase catalytic domain-containing protein n=3 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ93_CHOCR)

HSP 1 Score: 100 bits (249), Expect = 7.540e-21
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVRATAHPVDGPQAPKA-TQAHRSILGRDTEGIELIGPKDVVSRER 124
            +LG++   TTA HPQTN Q+ RFN+T+  RL+HYVA+HQ+D D Y+ PLT+ Y  Q+HRST T PF+L+L+R P    L        V   + P+   Q  R+ L +  + +E    K   ++ R
Sbjct:  410 LLGVRHYLTTAYHPQTNGQTERFNRTLVQRLRHYVAEHQRDWDEYIQPLTFAYNTQVHRSTETTPFDLVLTRPPSGLALPGTVPQDAVSNTEDPRTPVQYKRATLRKLRDALERTRVKLTAAQRR 534          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7Q7I0_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q7I0_CHOCR)

HSP 1 Score: 99.8 bits (247), Expect = 8.010e-21
Identity = 46/99 (46.46%), Postives = 67/99 (67.68%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAV--RATAHPVDGPQAPKAT 97
            +LG++   TTA HPQ+N Q+ RFN+T+  RL+HYV +HQ+D D YV PLT+ Y  Q+HRST T PF+L+L+  P   +L V  R T  P++  + P+ +
Sbjct:  332 LLGVRHYLTTAYHPQSNGQTERFNRTLVQRLRHYVEEHQRDWDDYVQPLTFAYNTQVHRSTETTPFDLVLTHPPSGLILPVLRRRTRGPIERTRGPRCS 430          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QU67_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QU67_CHOCR)

HSP 1 Score: 97.8 bits (242), Expect = 2.040e-20
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVRATA 85
            +LG+    TTA HPQTN Q+ RFNKTI  RL+HYV +HQ+D D ++ PL Y Y +Q+HRST T PF+L+L+R P  S L V  TA
Sbjct:   92 LLGIHHYLTTAYHPQTNGQTERFNKTIVQRLRHYVEEHQRDWDEFLQPLAYAYNIQVHRSTETTPFDLVLTRQP--SGLTVAGTA 174          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QLW9_CHOCR (Integrase catalytic domain-containing protein n=2 Tax=Chondrus crispus TaxID=2769 RepID=R7QLW9_CHOCR)

HSP 1 Score: 98.6 bits (244), Expect = 3.300e-20
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNP 74
            ++G++ L+TTA HPQTN Q  RFN+TI S ++HYV +HQK  D Y GPLTY Y  Q+HRSTG  PF L+ SR P
Sbjct:  436 IMGIRNLFTTAYHPQTNGQVERFNQTILSGIRHYVVEHQKTRDEYCGPLTYAYNTQVHRSTGCTPFELVFSRPP 509          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QLF2_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLF2_CHOCR)

HSP 1 Score: 97.8 bits (242), Expect = 7.020e-20
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVL 79
            +LG++   TTA HPQTN Q+ RFN+T+  RL+HYV +HQ+D D YV PLT+ Y  Q+HRST T PF+L+L+R P   +L
Sbjct:  586 LLGVRPYLTTAYHPQTNGQTERFNRTLVQRLRHYVEEHQRDWDDYVQPLTFAYNTQVHRSTETTPFDLVLTRPPTGLIL 664          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QN04_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN04_CHOCR)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-19
Identity = 43/79 (54.43%), Postives = 60/79 (75.95%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVL 79
            +LG++   TTA HPQ+N Q+ RFN+T+  RL+HYV +HQ+D D YV PLT+ Y  Q+HRST T PF+L+L+R PPS ++
Sbjct:  490 LLGVRHYLTTAYHPQSNGQTERFNRTLVQRLRHYVEEHQRDWDDYVQPLTFAYNTQVHRSTETTPFDLVLTR-PPSGLI 567          
BLAST of Gvermi5460.t1 vs. uniprot
Match: R7QMC5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMC5_CHOCR)

HSP 1 Score: 92.4 bits (228), Expect = 5.050e-18
Identity = 47/98 (47.96%), Postives = 63/98 (64.29%), Query Frame = 0
Query:    1 MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLTYTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVR----ATAHPVDGPQAP 94
            +LG++   TTA HPQ+  Q+ RFN+T+  RL+H V DHQ+D D YV PLT+ Y  Q+HRST T PF+L+L+R P   +L       A  HP D P+ P
Sbjct:  687 LLGVRHYLTTAYHPQSKGQTERFNRTLVQRLRHLVEDHQRDWDDYVQPLTFAYNTQVHRSTETTPFDLVLTRPPCGLILPGTVPQDAGTHPED-PRTP 783          
The following BLAST results are available for this feature:
BLAST of Gvermi5460.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q2U6_CHOCR1.350e-2646.15Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QR94_CHOCR5.140e-2450.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q4X3_CHOCR6.690e-2130.95Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QJ93_CHOCR7.540e-2140.80Integrase catalytic domain-containing protein n=3 ... [more]
R7Q7I0_CHOCR8.010e-2146.46Integrase catalytic domain-containing protein n=1 ... [more]
R7QU67_CHOCR2.040e-2055.29Integrase catalytic domain-containing protein n=1 ... [more]
R7QLW9_CHOCR3.300e-2058.11Integrase catalytic domain-containing protein n=2 ... [more]
R7QLF2_CHOCR7.020e-2054.43Integrase catalytic domain-containing protein n=1 ... [more]
R7QN04_CHOCR1.720e-1954.43Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QMC5_CHOCR5.050e-1847.96Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..99
e-value: 2.4E-12
score: 48.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2134302..2135182 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5460.t1Gvermi5460.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2134302..2135182 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5460.t1 ID=Gvermi5460.t1|Name=Gvermi5460.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=221bp
MLGMKQLYTTANHPQTNDQSVRFNKTIASRLKHYVADHQKDEDGYVGPLT
YTYKLQIHRSTGTAPFNLMLSRNPPSSVLAVRATAHPVDGPQAPKATQAH
RSILGRDTEGIELIGPKDVVSRERETKVPKPIASKILATPPPGSRAELCN
PATSRITIPLNTRNLITPLGEPLLEAPDGIMTPEGDILYAVDHTVSHRQT
PAGILYRVCWIGYTSKAYTK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf