Gvermi5129.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5129.t1
Unique NameGvermi5129.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length266
Homology
BLAST of Gvermi5129.t1 vs. uniprot
Match: A0A2V3J822_9FLOR (Upstream activation factor subunit UAF30 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J822_9FLOR)

HSP 1 Score: 247 bits (630), Expect = 1.420e-78
Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = 0
Query:   31 PRFLCSAQSAASRQSVVIPRKKIPTHARPIVPAKPLLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAV----EQAYIDELLSDGTPKKKARSKSQARKVSAKEDKKAGRNLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQKKE 265
            P   C A+ +A    VV    KIP + RPIVPAK LL FVEDKAQ R +++R I AY K+HNLQ+P++RR   CDD LK++ GV+    L+VLK   PH  +P+ +GGRY+ EA  +    EQ Y D+ L     KKK + KS+ARK  A+ED KAG  L+    LS +LAAVCR  EM+R EVV+AVWEYIRMNNL   GP + PVKCDFL+RKV+N DYINV+ VMSGISPH++KKE
Sbjct:   30 PNHRCVARPSA----VVASAPKIPAYRRPIVPAKILLPFVEDKAQTRSEIVRGITAYIKKHNLQDPKDRRTFTCDDRLKTIFGVESSNFLQVLKIIKPHLIDPKQLGGRYVVEAEQIIREMEQQYGDKPLR----KKKMQKKSRARKKGAEEDMKAGTRLFHPVVLSDDLAAVCRGREMQRQEVVKAVWEYIRMNNLQNQGPPDNPVKCDFLLRKVYNTDYINVRTVMSGISPHLKKKE 260          
BLAST of Gvermi5129.t1 vs. uniprot
Match: R7QDF0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDF0_CHOCR)

HSP 1 Score: 223 bits (567), Expect = 9.840e-69
Identity = 129/283 (45.58%), Postives = 178/283 (62.90%), Query Frame = 0
Query:    3 ALGRTQVVWLPAFASPSLL------------HPAAHVF-ARPRFLCSAQSAASRQSVVIPRKKIPTHARPIVPAKPLLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYID-------ELLSDGTPKK--KARSKSQARKVSAKEDKKAGRNLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQK 263
            AL  T   W  AFA+P L              P A V+   PR +    +A   +S   P + +P   RP+VP++ LL FVEDKAQPR  V++++  Y K+H LQ+P +RRI+ CDD LK +LGV++CTILE+ K+ +PH   PET+GG+YLE+A   E+ Y+        E L +G P K  K R K +  K +  EDK  GR L++   LSP+LAAVCR  EM RHE+V+AVWEYIR+NNL    P E P+KCDFL+RKVF++D I+V+ +M G++ H++K
Sbjct:    4 ALNMTSQRW--AFAAPLLPGRALFPSTLSRHSPLAPVYRVAPRAISLVATAPGPRSGAKPAR-VPAIVRPMVPSRDLLQFVEDKAQPRSVVLKSLSKYVKDHELQDPNDRRIVLCDDKLKKLLGVEKCTILEMSKYITPHLSKPETVGGKYLEDAGKFEEEYLRVKAAEAAERLENGEPLKPVKGRKKRRVSKTNT-EDKTKGRRLFKPVLLSPDLAAVCRKQEMPRHEIVKAVWEYIRLNNLQS-KPGE-PIKCDFLLRKVFDSDEIDVRAIMKGVAAHVKK 280          
BLAST of Gvermi5129.t1 vs. uniprot
Match: R7QH36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH36_CHOCR)

HSP 1 Score: 100 bits (249), Expect = 2.950e-21
Identity = 72/220 (32.73%), Postives = 112/220 (50.91%), Query Frame = 0
Query:   58 RPIVPAKPLLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYI-------DELLSDGTPKKKARSK----SQARKVSAKEDKKAGRNLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSG-ISPHIQKKE 265
            R +V A+PL  F+ D   PR  + + +  Y K+H+LQ+P +RR I CDD LK+ L VD  T   + K  S     P+       + A  VE+ Y+       DE +++G  ++K  SK    S+A+  S+   K +G  L +  +LS EL AVC   ++ R EVV+ +W YIR N L         + CD  ++ VF+ +     M M+  +S H+ + E
Sbjct:   97 RAVVLAEPLATFLGDTVIPRSHIPKRVSEYVKKHDLQDPNDRRSILCDDALKTALKVDTFTFFSLAKIISGLVHKPDDCSQELKDLAKEVEEKYLIEKQRKRDENIANGVFQEKKSSKKAKVSKAKSSSSAPRKPSG--LLKPMQLSEELFAVCGEAQLPRTEVVKKIWVYIRENQLKDPNNGNR-ILCDAKLQAVFDGNSTVTNMGMNKYLSAHLSQIE 313          
BLAST of Gvermi5129.t1 vs. uniprot
Match: M2X7W6_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X7W6_GALSU)

HSP 1 Score: 94.7 bits (234), Expect = 2.830e-19
Identity = 58/194 (29.90%), Postives = 101/194 (52.06%), Query Frame = 0
Query:   76 PRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYIDE-----LLSDGTPKKKARSKSQARKVSAKEDKKAGRNLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNA-DYINVKMVMSGISPHIQK 263
            PR  +++ +  Y K+HNLQ+PE +  I  D+ L+S+ GV+  T   + K  SP    PE       E+   +   Y+ E     LL+    K K + +S+ + ++       G +L +  +LS  L+ +C A  + R +VV+ VWEYI+++NL         + CD L++++F+  + IN   +   +SPH+QK
Sbjct:  101 PRTQIVKYLNQYIKKHNLQDPEQKNKIVLDNALRSLFGVETATFFSLNKLISPFLTIPE-------EQEQEMVHQYMKEHLKEALLAAEESKMKRKQQSKVQSLNKGTTSHRGESLQKPLKLSNLLSQICGAEYLSRSQVVKKVWEYIKLHNLQKASDKRN-ISCDALLKQLFDGKEEINSFHISKYLSPHLQK 286          
BLAST of Gvermi5129.t1 vs. uniprot
Match: A0A5J4Z492_PORPP (Upstream activation factor subunit spp27 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z492_PORPP)

HSP 1 Score: 93.2 bits (230), Expect = 3.310e-18
Identity = 70/214 (32.71%), Postives = 100/214 (46.73%), Query Frame = 0
Query:   41 ASRQSVVIPRKKIPTHARPIVPAKPLLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHF-RNPETMGGRYLEEANAVEQAYIDELLS---------DGTPKKKARSKSQARKVSAKEDKKAGRNLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFN 244
            A R+S VI    +     P+V A PL  F++ +   R DV + I  YAKEHNLQ+P + R   CD  LK +L  D  T   + K  +P   R  E       EEA  +E+  + E            DG    ++R + + +K  +  D + G      Y +S +LAAVC +  + R EVVR +W YI+ N L         + CD  +R VFN
Sbjct:  115 APRKSSVI--TSLSAFKLPVVLAPPLAEFLQARVMARSDVSQRIVKYAKEHNLQDPNDGRNYMCDAALKRLLQTDSFTYFSINKLTAPMMSRAREHPDAAVREEARILEERLLKEANEARAAETQDEDGFSDDESRLRMKKKKARSGPDNR-GNAFKAPYEISDQLAAVCGSNTLSRPEVVRRLWAYIKSNELQDPSNRRHII-CDAKLRAVFN 324          
BLAST of Gvermi5129.t1 vs. uniprot
Match: A0A0L0HEV9_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HEV9_SPIPD)

HSP 1 Score: 93.6 bits (231), Expect = 3.490e-18
Identity = 73/218 (33.49%), Postives = 115/218 (52.75%), Query Frame = 0
Query:   58 RPIVPAKPLLHFVEDKAQ-PRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCT-ILEVLKHASPHF-RNPETMGGRYLEEANAVEQAYIDELLSDGTPKKKARSKSQARKVSAKEDKKAGRNLYRT-------YRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQKKE 265
            RP+V +  L  FV    + PR  V++ + AY KEH+LQ+P ++R I  DD L+ V G  Q   +  + K  S H  ++ E +GGR      +VE    D+ L D   +K    K +A+K      +K+G  L RT       + LSPELAA+    E+ R +VV+ +W+Y++ N+L      +  + CD  ++KVF  D ++   + S +S H+ KKE
Sbjct:  196 RPVVLSPALSTFVGGATEMPRHTVVKLLWAYIKEHDLQDPNDKRYILVDDALRPVFGSRQRVGMFGMNKILSKHMMKSDEVVGGRTF---GSVED---DDDLCDSEVEKVKSPKPRAKKA-----RKSGNGLARTNNAFHRPWLLSPELAALLGKSELPRPQVVKGIWDYVKGNDLQDPSNRKF-ILCDAALQKVFKTDRVSGFGMNSLLSQHLMKKE 401          
BLAST of Gvermi5129.t1 vs. uniprot
Match: B7FQN1_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FQN1_PHATC)

HSP 1 Score: 87.4 bits (215), Expect = 1.430e-16
Identity = 62/195 (31.79%), Postives = 94/195 (48.21%), Query Frame = 0
Query:   73 KAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYIDELLSDGTPKKKARSKSQARKVSAK---EDKKAGRNLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQKK 264
            K   R D+++++  Y +EHNLQNPEN++ I  DD ++ V G D+ T+  + K+   H           +    AV+      L ++ TP     SK + RKVS K   E KK        YRLS ELA +     + R +VV  +WEYI+ N L      +  + CD  +R V     + +  +   ISPHI ++
Sbjct:  104 KEMARTDIVKSLWEYIREHNLQNPENKKEIILDDAMRDVFGCDRFTMFTMNKYIGAH-----------VSPFKAVD------LNTNSTP-----SKPRKRKVSTKASGEKKKRQPGTQPPYRLSAELAEITGEAILPRPQVVSKIWEYIKANELQNPSD-KREILCDEKLRAVMKKPKVTMFNMNKYISPHILER 275          
BLAST of Gvermi5129.t1 vs. uniprot
Match: A0A166AZZ5_DAUCS (Uncharacterized protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A166AZZ5_DAUCS)

HSP 1 Score: 85.1 bits (209), Expect = 1.950e-15
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 0
Query:   66 LLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYIDELLSDGTPKKKARSKSQARKVSAKEDKKAGR---NLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQ 262
            L +F      PR +V++ +  Y +E  LQ P +RR I CDD L+++  VD   + ++ K  + H    E+ G    EE    E    DE   +G+  +KA  KS+                    +   LSPEL      PE+ R EVV+ +W YI+ NNL         + CD  +R +FN D IN+  +   ++ HI+
Sbjct:   67 LQNFTGVSKLPRTEVVKQMWNYIREKELQEPSDRRTINCDDALRALFNVDSINMFQMNKALAKHIWPLESNG----EEQEEGEAEVADE---EGSDDEKATIKSKKXXXXXXXXXXXXXXXXGFKKVCSLSPELQKFTGVPELPRTEVVKQLWSYIKENNLQDPSDRRNII-CDDSLRVLFNVDSINMFQMNKALAKHIR 258          
BLAST of Gvermi5129.t1 vs. uniprot
Match: UPI0007EF4676 (DNA ligase 1 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF4676)

HSP 1 Score: 85.1 bits (209), Expect = 3.510e-15
Identity = 60/200 (30.00%), Postives = 92/200 (46.00%), Query Frame = 0
Query:   66 LLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYIDELLSDGTPKKKARSKSQARKVSAKEDKKAGR---NLYRTYRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQ 262
            L +F      PR +V++ +  Y +E  LQ P +RR I CDD L+++  VD   + ++ K  + H    E+ G    EE    E    DE   +G+  +KA  KS+                    +   LSPEL      PE+ R EVV+ +W YI+ NNL         + CD  +R +FN D IN+  +   ++ HI+
Sbjct:  145 LQNFTGVSKLPRTEVVKQMWNYIREKELQEPSDRRTINCDDALRALFNVDSINMFQMNKALAKHIWPLESNG----EEQEEGEAEVADE---EGSDDEKATIKSKKXXXXXXXXXXXXXXXXGFKKVCSLSPELQKFTGVPELPRTEVVKQLWSYIKENNLQDPSDRRNII-CDDSLRVLFNVDSINMFQMNKALAKHIR 336          
BLAST of Gvermi5129.t1 vs. uniprot
Match: A0A2D4C5B8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C5B8_PYTIN)

HSP 1 Score: 81.6 bits (200), Expect = 4.010e-14
Identity = 57/199 (28.64%), Postives = 92/199 (46.23%), Query Frame = 0
Query:   77 RKDVIRAICAYAKEHNLQNPENRRIIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQAYIDELLSDGTPKKKARSKSQARKVSAK---------EDKKAGRNLYRT-YRLSPELAAVCRAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINVKMVMSGISPHIQKKE 265
            R  +++A+  Y +EH+LQ+P+N+R+I+ D+ L++V   D  T+  V K+   H R PE +           +  + D L SD                            ++KK  RN +     LSPELAAV  A  + R ++V+ +WEYIR +NL       T +  D  +++VF  D + +  +   I  H  K E
Sbjct:  165 RPQIVKALWEYIREHDLQDPQNKRVIRLDERLRNVFQRDTVTMFSVNKYVKRHVRKPEEL------PPGGWDDIHRDGLSSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKKPKRNPFNAEXALSPELAAVVGADRLARPQIVKHIWEYIRAHNLQDPEDKRT-ILLDDTLKRVFQRDTVTMFSINKYIKRHAMKPE 356          
The following BLAST results are available for this feature:
BLAST of Gvermi5129.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J822_9FLOR1.420e-7855.23Upstream activation factor subunit UAF30 n=1 Tax=G... [more]
R7QDF0_CHOCR9.840e-6945.58Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QH36_CHOCR2.950e-2132.73Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2X7W6_GALSU2.830e-1929.90Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A5J4Z492_PORPP3.310e-1832.71Upstream activation factor subunit spp27 n=1 Tax=P... [more]
A0A0L0HEV9_SPIPD3.490e-1833.49Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
B7FQN1_PHATC1.430e-1631.79Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A166AZZ5_DAUCS1.950e-1530.00Uncharacterized protein n=1 Tax=Daucus carota subs... [more]
UPI0007EF46763.510e-1530.00DNA ligase 1 n=1 Tax=Daucus carota subsp. sativus ... [more]
A0A2D4C5B8_PYTIN4.010e-1428.64Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019835SWIB domainSMARTSM00151swib_2coord: 56..135
e-value: 4.9E-15
score: 66.0
coord: 186..265
e-value: 9.4E-5
score: 31.2
IPR003121SWIB/MDM2 domainPFAMPF02201SWIBcoord: 189..261
e-value: 4.1E-13
score: 49.0
coord: 61..130
e-value: 4.0E-18
score: 65.0
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 55..132
score: 17.076223
IPR003121SWIB/MDM2 domainPROSITEPS51925SWIB_MDM2coord: 185..263
score: 11.045938
IPR036885SWIB/MDM2 domain superfamilyGENE3D1.10.245.10SWIB/MDM2 domaincoord: 55..138
e-value: 3.4E-18
score: 67.4
coord: 180..265
e-value: 6.1E-16
score: 60.2
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 184..263
IPR036885SWIB/MDM2 domain superfamilySUPERFAMILY47592SWIB/MDM2 domaincoord: 56..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..178
NoneNo IPR availablePANTHERPTHR13844SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY Dcoord: 59..131
coord: 157..261
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..29
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..265
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 64..130
e-value: 4.56357E-22
score: 84.9025
NoneNo IPR availableCDDcd10567SWIB-MDM2_likecoord: 190..261
e-value: 9.91136E-18
score: 73.3465

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:349340..350137 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5129.t1Gvermi5129.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 349340..350137 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5129.t1 ID=Gvermi5129.t1|Name=Gvermi5129.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=266bp
MMALGRTQVVWLPAFASPSLLHPAAHVFARPRFLCSAQSAASRQSVVIPR
KKIPTHARPIVPAKPLLHFVEDKAQPRKDVIRAICAYAKEHNLQNPENRR
IIQCDDVLKSVLGVDQCTILEVLKHASPHFRNPETMGGRYLEEANAVEQA
YIDELLSDGTPKKKARSKSQARKVSAKEDKKAGRNLYRTYRLSPELAAVC
RAPEMRRHEVVRAVWEYIRMNNLNGLGPMETPVKCDFLMRKVFNADYINV
KMVMSGISPHIQKKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019835SWIB_domain
IPR003121SWIB_MDM2_domain
IPR036885SWIB_MDM2_dom_sf