Gvermi5456.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5456.t1
Unique NameGvermi5456.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length346
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2118658..2119695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5456Gvermi5456Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 2118658..2119695 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5456.t1.start1Gvermi5456.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 2118658..2118660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5456.t1.CDS1Gvermi5456.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 2118658..2119695 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5456.t1.exon1Gvermi5456.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 2118658..2119695 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5456.t1.stop1Gvermi5456.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 2119693..2119695 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5456.t1Gvermi5456.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 2118658..2119695 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5456.t1 ID=Gvermi5456.t1|Name=Gvermi5456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=346bp
MQLSLRNNHFSGEDPILVLDFLVRFVVEADVLGMNEGQAFVALPYFLRGI
AEDQYNSVCGSSRASEGGVTCWPEAVQYLVRSYATNTAILNAILALRDTR
QCPDEGETENSVRLDKASHRCGNVYPSSERFAMFTDRLIPPIRTLVARGW
EDKPNSTYLELVQYAQAEVDAIRARGSKDRGKSAKALLVNTGSSVASPLS
GVEPHLGYDNVQFAQDGTLSVPSTDLPSTAETLSETAQTWSTLYVDAPRV
PCSNGISRIQRPGWKDSRPSVRFSDDRQVHLQQRRLVLIWHLFCMHCHTS
PQCLFSLKDMGKVVVKYEALTPKDKGLVPIASYLHAKSDFSHVVP*
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spliced messenger RNA

>Gvermi5456.t1 ID=Gvermi5456.t1|Name=Gvermi5456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_24228:2118658..2119695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcagttgtcgctacgcaacaaccacttcagtggagaagacccaatctt
ggtgctcgacttcctcgtgcgctttgtcgtggaagccgacgtactaggga
tgaacgaaggccaggccttcgttgcactgccctatttcctaagggggatt
gcagaggaccagtacaactcagtatgtggttcctcgcgtgcctccgaggg
aggagtgacgtgctggccggaggcggtacagtacctggtgcgctcgtacg
caacaaataccgccatcctgaatgcaatcctcgctctgagggatactcgc
caatgccctgatgagggagagaccgaaaactccgtacggctagacaaagc
ctctcaccgctgtgggaatgtctacccctctagtgaacgctttgcaatgt
tcaccgatagactcatcccaccaatccggactctcgtggcccgtggctgg
gaagataagccgaattcaacgtacctcgagttggtccagtacgcccaagc
ggaggtggatgcgattcgcgcacgtggctccaaggatcgggggaagtccg
ccaaagcgttgctggtgaacaccggttcgtccgttgcatccccattatcg
ggagtggagccccatttgggatatgataatgttcagttcgcgcaggacgg
cacgctttctgtaccttccacggacttgccgtctaccgcagagactttgt
ccgagactgcccaaacttggtccacgctgtacgtcgacgctccgcgcgta
ccgtgctcgaacggaatatcccgcatccagcggcctggatggaaggactc
tcgcccctcagtacgcttttcggatgaccggcaggttcaccttcaacaga
ggaggttggtcctcatttggcacctcttctgtatgcactgccacacctcc
ccacagtgtctcttctcactgaaagacatggggaaggtggtggtgaagta
tgaggccctcacccctaaagataaggggttggtacccatcgcttcgtacc
tccacgccaagtcggacttctcgcatgtcgtcccgtaa
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protein sequence of Gvermi5456.t1

>Gvermi5456.t1 ID=Gvermi5456.t1|Name=Gvermi5456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=346bp
MQLSLRNNHFSGEDPILVLDFLVRFVVEADVLGMNEGQAFVALPYFLRGI
AEDQYNSVCGSSRASEGGVTCWPEAVQYLVRSYATNTAILNAILALRDTR
QCPDEGETENSVRLDKASHRCGNVYPSSERFAMFTDRLIPPIRTLVARGW
EDKPNSTYLELVQYAQAEVDAIRARGSKDRGKSAKALLVNTGSSVASPLS
GVEPHLGYDNVQFAQDGTLSVPSTDLPSTAETLSETAQTWSTLYVDAPRV
PCSNGISRIQRPGWKDSRPSVRFSDDRQVHLQQRRLVLIWHLFCMHCHTS
PQCLFSLKDMGKVVVKYEALTPKDKGLVPIASYLHAKSDFSHVVP*
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mRNA from alignment at ScGOVlb_24228:2118658..2119695+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5456.t1 ID=Gvermi5456.t1|Name=Gvermi5456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1038bp|location=Sequence derived from alignment at ScGOVlb_24228:2118658..2119695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcagttgtcgctacgcaacaaccacttcagtggagaagacccaatctt
ggtgctcgacttcctcgtgcgctttgtcgtggaagccgacgtactaggga
tgaacgaaggccaggccttcgttgcactgccctatttcctaagggggatt
gcagaggaccagtacaactcagtatgtggttcctcgcgtgcctccgaggg
aggagtgacgtgctggccggaggcggtacagtacctggtgcgctcgtacg
caacaaataccgccatcctgaatgcaatcctcgctctgagggatactcgc
caatgccctgatgagggagagaccgaaaactccgtacggctagacaaagc
ctctcaccgctgtgggaatgtctacccctctagtgaacgctttgcaatgt
tcaccgatagactcatcccaccaatccggactctcgtggcccgtggctgg
gaagataagccgaattcaacgtacctcgagttggtccagtacgcccaagc
ggaggtggatgcgattcgcgcacgtggctccaaggatcgggggaagtccg
ccaaagcgttgctggtgaacaccggttcgtccgttgcatccccattatcg
ggagtggagccccatttgggatatgataatgttcagttcgcgcaggacgg
cacgctttctgtaccttccacggacttgccgtctaccgcagagactttgt
ccgagactgcccaaacttggtccacgctgtacgtcgacgctccgcgcgta
ccgtgctcgaacggaatatcccgcatccagcggcctggatggaaggactc
tcgcccctcagtacgcttttcggatgaccggcaggttcaccttcaacaga
ggaggttggtcctcatttggcacctcttctgtatgcactgccacacctcc
ccacagtgtctcttctcactgaaagacatggggaaggtggtggtgaagta
tgaggccctcacccctaaagataaggggttggtacccatcgcttcgtacc
tccacgccaagtcggacttctcgcatgtcgtcccgtaa
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Coding sequence (CDS) from alignment at ScGOVlb_24228:2118658..2119695+

>Gvermi5456.t1 ID=Gvermi5456.t1|Name=Gvermi5456.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1038bp|location=Sequence derived from alignment at ScGOVlb_24228:2118658..2119695+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcagttgtcgctacgcaacaaccacttcagtggagaagacccaatctt
ggtgctcgacttcctcgtgcgctttgtcgtggaagccgacgtactaggga
tgaacgaaggccaggccttcgttgcactgccctatttcctaagggggatt
gcagaggaccagtacaactcagtatgtggttcctcgcgtgcctccgaggg
aggagtgacgtgctggccggaggcggtacagtacctggtgcgctcgtacg
caacaaataccgccatcctgaatgcaatcctcgctctgagggatactcgc
caatgccctgatgagggagagaccgaaaactccgtacggctagacaaagc
ctctcaccgctgtgggaatgtctacccctctagtgaacgctttgcaatgt
tcaccgatagactcatcccaccaatccggactctcgtggcccgtggctgg
gaagataagccgaattcaacgtacctcgagttggtccagtacgcccaagc
ggaggtggatgcgattcgcgcacgtggctccaaggatcgggggaagtccg
ccaaagcgttgctggtgaacaccggttcgtccgttgcatccccattatcg
ggagtggagccccatttgggatatgataatgttcagttcgcgcaggacgg
cacgctttctgtaccttccacggacttgccgtctaccgcagagactttgt
ccgagactgcccaaacttggtccacgctgtacgtcgacgctccgcgcgta
ccgtgctcgaacggaatatcccgcatccagcggcctggatggaaggactc
tcgcccctcagtacgcttttcggatgaccggcaggttcaccttcaacaga
ggaggttggtcctcatttggcacctcttctgtatgcactgccacacctcc
ccacagtgtctcttctcactgaaagacatggggaaggtggtggtgaagta
tgaggccctcacccctaaagataaggggttggtacccatcgcttcgtacc
tccacgccaagtcggacttctcgcatgtcgtcccgtaa
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