Gvermi8000.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8000.t1
Unique NameGvermi8000.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length87
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:601401..601850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8000Gvermi8000Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 601401..601850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8000.t1Gvermi8000.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 601401..601850 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8000.t1.stop1Gvermi8000.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 601401..601403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8000.t1.CDS1Gvermi8000.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 601401..601509 -
Gvermi8000.t1.CDS2Gvermi8000.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 601619..601716 -
Gvermi8000.t1.CDS3Gvermi8000.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 601797..601850 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8000.t1.exon1Gvermi8000.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 601401..601509 -
Gvermi8000.t1.exon2Gvermi8000.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 601619..601716 -
Gvermi8000.t1.exon3Gvermi8000.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 601797..601850 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8000.t1.intron1Gvermi8000.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 601510..601618 -
Gvermi8000.t1.intron2Gvermi8000.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 601717..601796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8000.t1.start1Gvermi8000.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 601848..601850 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8000.t1 ID=Gvermi8000.t1|Name=Gvermi8000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=87bp
MSGAASELDPDIKPAPAKPKRRAQPGDFEKQVDRIRRDLGTIRTNLAVAE
KALEVAPAVAPLAQPQQQLQNECREDHGHDAVEQRT*
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spliced messenger RNA

>Gvermi8000.t1 ID=Gvermi8000.t1|Name=Gvermi8000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=261bp|location=Sequence derived from alignment at ScGOVlb_24226:601401..601850- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGGCGCTGCCTCCGAGCTCGACCCCGATATCAAACCTGCACCTGC
AAAGCCCAAGCGGCGCGCCCAACCCGGCGACTTCGAGAAGCAGGTCGACC
GCATTCGGCGTGACCTCGGCACCATTCGCACCAACCTGGCTGTCGCCGAA
AAGGCGTTAGAAGTGGCTCCCGCCGTTGCCCCGCTCGCACAGCCGCAGCA
ACAGCTGCAAAACGAATGCCGTGAAGATCATGGCCACGATGCCGTCGAGC
AGCGGACATGA
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protein sequence of Gvermi8000.t1

>Gvermi8000.t1 ID=Gvermi8000.t1|Name=Gvermi8000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=87bp
MSGAASELDPDIKPAPAKPKRRAQPGDFEKQVDRIRRDLGTIRTNLAVAE
KALEVAPAVAPLAQPQQQLQNECREDHGHDAVEQRT*
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mRNA from alignment at ScGOVlb_24226:601401..601850-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8000.t1 ID=Gvermi8000.t1|Name=Gvermi8000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=450bp|location=Sequence derived from alignment at ScGOVlb_24226:601401..601850- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGCGCTGCCTCCGAGCTCGACCCCGATATCAAACCTGCACCTGC
AAAGGTACGTCTGCCTTGCGCCACCCAGCTTCTCGCCACTCCCCGCCGCC
ACCACTCACGCACAGTTGTGCTCTGTGCTCGCAGCCCAAGCGGCGCGCCC
AACCCGGCGACTTCGAGAAGCAGGTCGACCGCATTCGGCGTGACCTCGGC
ACCATTCGCACCAACCTGGCTGTCGCCGAAAAGTAAGCTCGTCCCGCGCC
CGCGCCCGCGCCCGCGCCCGCGCCGCCGTTGCATTGTCGCCTGCGCTCAC
TCACACAACCCTCCCCGTGCGTTTCCGTTGTTGCCACCCAGGGCGTTAGA
AGTGGCTCCCGCCGTTGCCCCGCTCGCACAGCCGCAGCAACAGCTGCAAA
ACGAATGCCGTGAAGATCATGGCCACGATGCCGTCGAGCAGCGGACATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:601401..601850-

>Gvermi8000.t1 ID=Gvermi8000.t1|Name=Gvermi8000.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=261bp|location=Sequence derived from alignment at ScGOVlb_24226:601401..601850- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGGCGCTGCCTCCGAGCTCGACCCCGATATCAAACCTGCACCTGC
AAAGCCCAAGCGGCGCGCCCAACCCGGCGACTTCGAGAAGCAGGTCGACC
GCATTCGGCGTGACCTCGGCACCATTCGCACCAACCTGGCTGTCGCCGAA
AAGGCGTTAGAAGTGGCTCCCGCCGTTGCCCCGCTCGCACAGCCGCAGCA
ACAGCTGCAAAACGAATGCCGTGAAGATCATGGCCACGATGCCGTCGAGC
AGCGGACATGA
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