Gvermi4293.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi4293.t1
Unique NameGvermi4293.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length455
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1064726..1066188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_07442T0
PFAMsPex14_N
Max annot lvl4751|Fungi
Evalue9.44e-08
EggNOG OGs2C61K@1|root,2S3Q3@2759|Eukaryota,3A9KV@33154|Opisthokonta,3P7S2@4751|Fungi
DescriptionPeroxisomal membrane anchor protein (Pex14p) conserved region
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4293Gvermi4293Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_147 1064726..1066188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4293.t1Gvermi4293.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_147 1064726..1066188 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4293.t1.stop1Gvermi4293.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_147 1064726..1064728 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4293.t1.CDS1Gvermi4293.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1064726..1065600 -
Gvermi4293.t1.CDS2Gvermi4293.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_147 1065699..1066188 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4293.t1.exon1Gvermi4293.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1064726..1065600 -
Gvermi4293.t1.exon2Gvermi4293.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_147 1065699..1066188 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4293.t1.intron1Gvermi4293.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_147 1065601..1065698 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi4293.t1.start1Gvermi4293.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_147 1066186..1066188 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi4293.t1 ID=Gvermi4293.t1|Name=Gvermi4293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=455bp
MSDPFEDSATPLPAASGVRESSVQQAVTFLKDPRVRRSDPSRALAFLRQK
GISDEELREAYRREGLPFPQAIAQPLPHPHLPQHPFPVAPPPFPGPLQVR
PVATRPSWVSVFLGLTAAAGVYTALRELLRRYVVPLYFPDAARIAEERRL
REENTFLAQQRQIAELRERIQDLLASSEKTSDQVEHLSKSISSSIALRER
ELSQASELRDAIRQLSHSVTASGNTETSRIIRPSPERDVDSNLSQRILNH
AQKSGSLAYTHGKQTDTSRLRKSVDIQTVDVNTDGDSIPQGSNSARVTPV
SESHVDHFVSAEEGNHNSEGNPFDGADDFMAMKPAEVDENWKAKVFKSRE
YESEGPVQEVCVSDTQKPHDSIENGVIARNSESGRVQFSEEDEMGVLTGV
DENKGLRVAIARQLFQSDMMREAKNVVSSSQTSSEHRVRPVSMPPLEIPL
SDAE*
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spliced messenger RNA

>Gvermi4293.t1 ID=Gvermi4293.t1|Name=Gvermi4293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1365bp|location=Sequence derived from alignment at ScGOVlb_147:1064726..1066188- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACCCCTTTGAAGATTCTGCCACCCCACTTCCAGCCGCAAGCGG
TGTCCGCGAGTCTTCAGTTCAACAGGCTGTTACTTTCCTGAAAGACCCCC
GAGTGAGAAGGTCTGACCCCTCTCGAGCGCTTGCATTCCTCCGGCAGAAG
GGTATCTCCGATGAAGAGCTTCGCGAAGCATATCGGCGCGAAGGTCTTCC
GTTTCCTCAAGCTATCGCACAGCCTCTACCCCATCCGCATCTTCCACAAC
ATCCTTTCCCTGTTGCTCCCCCACCATTTCCAGGCCCGCTACAAGTGCGG
CCGGTAGCCACAAGGCCGTCTTGGGTGTCCGTATTTTTGGGTTTGACGGC
AGCAGCCGGGGTTTATACCGCGTTACGCGAGCTTCTACGAAGATATGTAG
TCCCTCTTTACTTTCCGGATGCTGCTCGAATTGCCGAAGAGCGTCGTCTA
CGAGAGGAGAATACATTTCTTGCACAACAACGTCAAATAGCGGAACTCAG
GGAGAGAATCCAAGATCTTCTGGCTTCGTCGGAAAAGACGAGTGATCAAG
TGGAACACTTATCAAAATCCATATCCTCATCTATTGCATTAAGAGAACGT
GAACTATCCCAGGCTTCGGAGCTGCGAGATGCGATACGACAGCTTTCGCA
CAGCGTCACTGCTTCTGGAAATACTGAAACGTCACGAATAATAAGACCGT
CTCCTGAGCGAGATGTAGACAGTAATCTGAGCCAACGCATTCTGAATCAT
GCGCAAAAGAGTGGAAGTTTAGCGTACACGCATGGCAAACAAACTGATAC
ATCCAGGCTACGAAAGTCTGTCGATATTCAGACCGTTGATGTGAACACTG
ACGGGGATTCCATACCTCAGGGTTCAAACTCGGCTAGAGTCACCCCTGTT
TCAGAGAGTCACGTTGACCACTTCGTTTCTGCGGAAGAAGGGAATCATAA
TTCTGAAGGCAATCCATTCGATGGTGCTGATGACTTCATGGCGATGAAGC
CAGCTGAAGTTGATGAGAACTGGAAGGCAAAGGTATTCAAATCGAGGGAA
TACGAAAGCGAAGGTCCTGTTCAAGAAGTATGTGTGAGCGATACGCAGAA
ACCTCACGATAGTATTGAGAATGGGGTGATAGCAAGAAATTCTGAGTCAG
GGAGGGTTCAGTTTAGTGAGGAGGATGAAATGGGAGTATTAACTGGCGTT
GACGAGAACAAAGGGCTTCGCGTTGCCATTGCACGACAATTGTTTCAGTC
AGACATGATGAGGGAAGCGAAGAATGTGGTGAGCTCTAGTCAAACTTCAA
GTGAGCATCGGGTGAGGCCAGTCAGCATGCCACCGCTAGAGATTCCGCTG
AGCGATGCAGAATGA
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protein sequence of Gvermi4293.t1

>Gvermi4293.t1 ID=Gvermi4293.t1|Name=Gvermi4293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=455bp
MSDPFEDSATPLPAASGVRESSVQQAVTFLKDPRVRRSDPSRALAFLRQK
GISDEELREAYRREGLPFPQAIAQPLPHPHLPQHPFPVAPPPFPGPLQVR
PVATRPSWVSVFLGLTAAAGVYTALRELLRRYVVPLYFPDAARIAEERRL
REENTFLAQQRQIAELRERIQDLLASSEKTSDQVEHLSKSISSSIALRER
ELSQASELRDAIRQLSHSVTASGNTETSRIIRPSPERDVDSNLSQRILNH
AQKSGSLAYTHGKQTDTSRLRKSVDIQTVDVNTDGDSIPQGSNSARVTPV
SESHVDHFVSAEEGNHNSEGNPFDGADDFMAMKPAEVDENWKAKVFKSRE
YESEGPVQEVCVSDTQKPHDSIENGVIARNSESGRVQFSEEDEMGVLTGV
DENKGLRVAIARQLFQSDMMREAKNVVSSSQTSSEHRVRPVSMPPLEIPL
SDAE*
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mRNA from alignment at ScGOVlb_147:1064726..1066188-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi4293.t1 ID=Gvermi4293.t1|Name=Gvermi4293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1463bp|location=Sequence derived from alignment at ScGOVlb_147:1064726..1066188- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGACCCCTTTGAAGATTCTGCCACCCCACTTCCAGCCGCAAGCGG
TGTCCGCGAGTCTTCAGTTCAACAGGCTGTTACTTTCCTGAAAGACCCCC
GAGTGAGAAGGTCTGACCCCTCTCGAGCGCTTGCATTCCTCCGGCAGAAG
GGTATCTCCGATGAAGAGCTTCGCGAAGCATATCGGCGCGAAGGTCTTCC
GTTTCCTCAAGCTATCGCACAGCCTCTACCCCATCCGCATCTTCCACAAC
ATCCTTTCCCTGTTGCTCCCCCACCATTTCCAGGCCCGCTACAAGTGCGG
CCGGTAGCCACAAGGCCGTCTTGGGTGTCCGTATTTTTGGGTTTGACGGC
AGCAGCCGGGGTTTATACCGCGTTACGCGAGCTTCTACGAAGATATGTAG
TCCCTCTTTACTTTCCGGATGCTGCTCGAATTGCCGAAGAGCGTCGTCTA
CGAGAGGAGAATACATTTCTTGCACAACAACGTCAAATAGGTAAGCCAAT
CGCAAGTCACTCAGAATGCTCAACGTCGAAAACGCATTGTTGTTCTAACA
CTTGTCTTTACCCTGGGCCATTCTTGGCGGCTGAAAAGCGGAACTCAGGG
AGAGAATCCAAGATCTTCTGGCTTCGTCGGAAAAGACGAGTGATCAAGTG
GAACACTTATCAAAATCCATATCCTCATCTATTGCATTAAGAGAACGTGA
ACTATCCCAGGCTTCGGAGCTGCGAGATGCGATACGACAGCTTTCGCACA
GCGTCACTGCTTCTGGAAATACTGAAACGTCACGAATAATAAGACCGTCT
CCTGAGCGAGATGTAGACAGTAATCTGAGCCAACGCATTCTGAATCATGC
GCAAAAGAGTGGAAGTTTAGCGTACACGCATGGCAAACAAACTGATACAT
CCAGGCTACGAAAGTCTGTCGATATTCAGACCGTTGATGTGAACACTGAC
GGGGATTCCATACCTCAGGGTTCAAACTCGGCTAGAGTCACCCCTGTTTC
AGAGAGTCACGTTGACCACTTCGTTTCTGCGGAAGAAGGGAATCATAATT
CTGAAGGCAATCCATTCGATGGTGCTGATGACTTCATGGCGATGAAGCCA
GCTGAAGTTGATGAGAACTGGAAGGCAAAGGTATTCAAATCGAGGGAATA
CGAAAGCGAAGGTCCTGTTCAAGAAGTATGTGTGAGCGATACGCAGAAAC
CTCACGATAGTATTGAGAATGGGGTGATAGCAAGAAATTCTGAGTCAGGG
AGGGTTCAGTTTAGTGAGGAGGATGAAATGGGAGTATTAACTGGCGTTGA
CGAGAACAAAGGGCTTCGCGTTGCCATTGCACGACAATTGTTTCAGTCAG
ACATGATGAGGGAAGCGAAGAATGTGGTGAGCTCTAGTCAAACTTCAAGT
GAGCATCGGGTGAGGCCAGTCAGCATGCCACCGCTAGAGATTCCGCTGAG
CGATGCAGAATGA
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Coding sequence (CDS) from alignment at ScGOVlb_147:1064726..1066188-

>Gvermi4293.t1 ID=Gvermi4293.t1|Name=Gvermi4293.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1365bp|location=Sequence derived from alignment at ScGOVlb_147:1064726..1066188- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGTGACCCCTTTGAAGATTCTGCCACCCCACTTCCAGCCGCAAGCGG
TGTCCGCGAGTCTTCAGTTCAACAGGCTGTTACTTTCCTGAAAGACCCCC
GAGTGAGAAGGTCTGACCCCTCTCGAGCGCTTGCATTCCTCCGGCAGAAG
GGTATCTCCGATGAAGAGCTTCGCGAAGCATATCGGCGCGAAGGTCTTCC
GTTTCCTCAAGCTATCGCACAGCCTCTACCCCATCCGCATCTTCCACAAC
ATCCTTTCCCTGTTGCTCCCCCACCATTTCCAGGCCCGCTACAAGTGCGG
CCGGTAGCCACAAGGCCGTCTTGGGTGTCCGTATTTTTGGGTTTGACGGC
AGCAGCCGGGGTTTATACCGCGTTACGCGAGCTTCTACGAAGATATGTAG
TCCCTCTTTACTTTCCGGATGCTGCTCGAATTGCCGAAGAGCGTCGTCTA
CGAGAGGAGAATACATTTCTTGCACAACAACGTCAAATAGCGGAACTCAG
GGAGAGAATCCAAGATCTTCTGGCTTCGTCGGAAAAGACGAGTGATCAAG
TGGAACACTTATCAAAATCCATATCCTCATCTATTGCATTAAGAGAACGT
GAACTATCCCAGGCTTCGGAGCTGCGAGATGCGATACGACAGCTTTCGCA
CAGCGTCACTGCTTCTGGAAATACTGAAACGTCACGAATAATAAGACCGT
CTCCTGAGCGAGATGTAGACAGTAATCTGAGCCAACGCATTCTGAATCAT
GCGCAAAAGAGTGGAAGTTTAGCGTACACGCATGGCAAACAAACTGATAC
ATCCAGGCTACGAAAGTCTGTCGATATTCAGACCGTTGATGTGAACACTG
ACGGGGATTCCATACCTCAGGGTTCAAACTCGGCTAGAGTCACCCCTGTT
TCAGAGAGTCACGTTGACCACTTCGTTTCTGCGGAAGAAGGGAATCATAA
TTCTGAAGGCAATCCATTCGATGGTGCTGATGACTTCATGGCGATGAAGC
CAGCTGAAGTTGATGAGAACTGGAAGGCAAAGGTATTCAAATCGAGGGAA
TACGAAAGCGAAGGTCCTGTTCAAGAAGTATGTGTGAGCGATACGCAGAA
ACCTCACGATAGTATTGAGAATGGGGTGATAGCAAGAAATTCTGAGTCAG
GGAGGGTTCAGTTTAGTGAGGAGGATGAAATGGGAGTATTAACTGGCGTT
GACGAGAACAAAGGGCTTCGCGTTGCCATTGCACGACAATTGTTTCAGTC
AGACATGATGAGGGAAGCGAAGAATGTGGTGAGCTCTAGTCAAACTTCAA
GTGAGCATCGGGTGAGGCCAGTCAGCATGCCACCGCTAGAGATTCCGCTG
AGCGATGCAGAATGA
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