Gvermi7951.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7951.t1
Unique NameGvermi7951.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length611
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:287462..289382 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_01009T0
Preferred nameABCD4
PFAMsABC_membrane_2,ABC_tran
Max annot lvl33154|Opisthokonta
KEGG koko:K05678
KEGG TC3.A.1.203
KEGG Pathwayko02010,ko04146,map02010,map04146
GOsGO:0000166,GO:0000323,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005777,GO:0005778,GO:0005783,GO:0005789,GO:0005886,GO:0006725,GO:0006766,GO:0006767,GO:0006807,GO:0006810,GO:0008144,GO:0008150,GO:0008152,GO:0009235,GO:0009987,GO:0010033,GO:0012505,GO:0015399,GO:0015405,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0022804,GO:0022857,GO:0030554,GO:0031090,GO:0031224,GO:0031903,GO:0031984,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033013,GO:0034097,GO:0035639,GO:0036094,GO:0042175,GO:0042221,GO:0042579,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043190,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044237,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0046483,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0055085,GO:0070887,GO:0071310,GO:0071345,GO:0071704,GO:0071944,GO:0097159,GO:0097367,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0098852,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1902494,GO:1902495,GO:1904949,GO:1990351,GO:1990823,GO:1990830
Evalue1.46e-94
EggNOG OGsCOG4178@1|root,KOG0060@2759|Eukaryota,38G49@33154|Opisthokonta
DescriptionATPase activity, coupled to transmembrane movement of substances
COG categoryI
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7951Gvermi7951Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 287462..289382 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7951.t1Gvermi7951.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 287462..289382 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7951.t1.stop1Gvermi7951.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 287462..287464 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7951.t1.CDS1Gvermi7951.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 287462..289207 -
Gvermi7951.t1.CDS2Gvermi7951.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 289296..289382 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7951.t1.exon1Gvermi7951.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 287462..289207 -
Gvermi7951.t1.exon2Gvermi7951.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 289296..289382 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7951.t1.intron1Gvermi7951.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_24226 289208..289295 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7951.t1.start1Gvermi7951.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 289380..289382 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7951.t1 ID=Gvermi7951.t1|Name=Gvermi7951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=611bp
MTLSPDRHAVLNRESLRKVFHILKVASIPIFPDIVVMLCLPLAILAYMIG
GYFVILAPGKLYNTLVSEDWPLFRSEMTKYALIATAVLFVKVLRGALRES
SANYLRLRITNAIHSLYFASQPHLNAYSPPAYYKLIADNEVDNPDQRIVA
DARDFSASLLDILAGGRSQGQDTGGCIEAVASLLLYSNKTLGRTGWFGIV
VAYLWSSLVSLGTIFAVNRTSPVVFRQEMLEADFRYRHAEFRRQYEEIAM
LRGAPFEKDRLSSNLNMAVSNTWTVISRHVFLNFVQYGFGYYVSLIMYLA
LALAIYTNVFESSGASFSSDMTPGEKAQWISQTGGIFMQLLFSFTMLVQL
GTVASEFVSHVNRLAALVTVLEEKPASQLDRIDDCDAEPLMSRASQDYEH
SSLISSTDFIQVEELVVQPGGSVCIGPISFTLEKGRWILLDGRTGTGKTS
IVRVLRGIRPPSSGTIQMPQNQETVMFVPQTPYVTSGTCSLRELVTYPKR
SCGTIEETNRVSRALEDVGWHRGLHGQCLDLKTDWSCQISPGEAQLIAAS
RVLFHRPSFVILDEPTASLDVESEARVMTALKRAGISSLTVAHSPSLRQL
HDQIVTLGRH*
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spliced messenger RNA

>Gvermi7951.t1 ID=Gvermi7951.t1|Name=Gvermi7951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1833bp|location=Sequence derived from alignment at ScGOVlb_24226:287462..289382- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCTTTCCCCTGACAGGCACGCCGTCCTAAATCGGGAGTCGCTTCG
GAAAGTCTTTCACATTCTCAAGGTTGCCTCCATTCCGATCTTTCCGGATA
TTGTTGTCATGCTCTGCCTCCCTTTGGCGATACTGGCATACATGATAGGG
GGCTACTTTGTCATCCTGGCTCCGGGAAAGCTTTACAACACGCTAGTCAG
CGAAGACTGGCCCCTTTTTCGCAGCGAAATGACCAAGTACGCACTGATTG
CAACAGCCGTTTTGTTTGTTAAAGTTCTCCGGGGCGCACTGCGGGAATCG
TCCGCAAACTACCTGCGCCTCAGAATCACGAATGCTATCCACTCCCTGTA
CTTTGCTTCTCAACCCCACCTGAACGCGTACAGCCCCCCCGCTTACTACA
AACTCATCGCAGACAATGAGGTAGACAACCCGGACCAGCGAATAGTTGCA
GATGCCCGCGACTTTTCAGCCTCGCTGCTGGACATCTTGGCGGGGGGGCG
GTCGCAGGGCCAGGACACCGGCGGTTGCATTGAAGCCGTGGCCTCTCTAC
TCTTGTACTCCAACAAAACGCTGGGGCGCACCGGCTGGTTCGGGATTGTT
GTGGCCTACTTGTGGTCGTCGCTCGTGTCGCTTGGGACCATCTTCGCCGT
AAACCGCACGTCGCCTGTAGTGTTTCGCCAGGAGATGCTCGAGGCTGACT
TCCGATACCGACATGCAGAATTTCGTCGTCAGTACGAAGAGATCGCGATG
TTGAGGGGCGCTCCGTTCGAAAAGGACAGGCTCTCAAGCAACTTGAACAT
GGCCGTGTCCAATACTTGGACTGTGATTTCGCGGCATGTTTTCTTGAACT
TTGTTCAGTACGGCTTTGGGTACTACGTATCGCTGATCATGTACTTGGCC
TTGGCCTTGGCCATTTACACCAATGTGTTCGAGTCCTCTGGTGCGAGCTT
CTCGTCGGATATGACGCCGGGCGAAAAGGCACAATGGATTTCTCAAACTG
GAGGTATCTTCATGCAACTCCTGTTTTCATTCACCATGTTGGTTCAACTA
GGAACGGTTGCCAGTGAATTCGTTTCACATGTAAATAGATTGGCAGCTCT
GGTAACTGTGCTTGAGGAGAAGCCCGCATCGCAACTCGACAGGATTGATG
ACTGTGATGCTGAACCTCTGATGTCAAGAGCATCACAGGATTATGAGCAC
TCGTCGTTGATTTCTTCAACAGATTTCATCCAAGTTGAGGAGCTCGTCGT
ACAACCCGGAGGTTCCGTATGCATCGGGCCGATTTCGTTCACTCTCGAAA
AGGGTCGTTGGATTTTGCTTGATGGGAGAACTGGAACTGGAAAGACAAGC
ATTGTGAGAGTTCTTCGCGGCATACGGCCTCCTTCGTCTGGCACGATTCA
GATGCCGCAGAACCAAGAAACAGTTATGTTTGTGCCGCAAACTCCATACG
TTACCTCGGGTACATGTTCTTTACGCGAACTGGTCACTTATCCAAAACGG
AGTTGTGGGACAATAGAAGAAACTAATAGAGTATCCAGGGCTCTGGAGGA
TGTTGGTTGGCACAGAGGTTTACATGGACAATGTTTAGATCTCAAGACGG
ACTGGTCATGCCAGATTAGTCCGGGTGAGGCGCAACTGATTGCAGCCTCT
CGGGTTTTGTTCCACAGACCCAGTTTTGTTATTCTGGACGAACCTACAGC
CTCGCTTGACGTTGAGAGCGAAGCAAGAGTAATGACGGCGTTGAAAAGAG
CCGGAATATCGTCTCTAACAGTTGCGCACTCCCCCTCACTAAGACAGCTT
CACGATCAAATCGTAACCTTGGGGCGCCATTGA
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protein sequence of Gvermi7951.t1

>Gvermi7951.t1 ID=Gvermi7951.t1|Name=Gvermi7951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=611bp
MTLSPDRHAVLNRESLRKVFHILKVASIPIFPDIVVMLCLPLAILAYMIG
GYFVILAPGKLYNTLVSEDWPLFRSEMTKYALIATAVLFVKVLRGALRES
SANYLRLRITNAIHSLYFASQPHLNAYSPPAYYKLIADNEVDNPDQRIVA
DARDFSASLLDILAGGRSQGQDTGGCIEAVASLLLYSNKTLGRTGWFGIV
VAYLWSSLVSLGTIFAVNRTSPVVFRQEMLEADFRYRHAEFRRQYEEIAM
LRGAPFEKDRLSSNLNMAVSNTWTVISRHVFLNFVQYGFGYYVSLIMYLA
LALAIYTNVFESSGASFSSDMTPGEKAQWISQTGGIFMQLLFSFTMLVQL
GTVASEFVSHVNRLAALVTVLEEKPASQLDRIDDCDAEPLMSRASQDYEH
SSLISSTDFIQVEELVVQPGGSVCIGPISFTLEKGRWILLDGRTGTGKTS
IVRVLRGIRPPSSGTIQMPQNQETVMFVPQTPYVTSGTCSLRELVTYPKR
SCGTIEETNRVSRALEDVGWHRGLHGQCLDLKTDWSCQISPGEAQLIAAS
RVLFHRPSFVILDEPTASLDVESEARVMTALKRAGISSLTVAHSPSLRQL
HDQIVTLGRH*
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mRNA from alignment at ScGOVlb_24226:287462..289382-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7951.t1 ID=Gvermi7951.t1|Name=Gvermi7951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1921bp|location=Sequence derived from alignment at ScGOVlb_24226:287462..289382- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCTTTCCCCTGACAGGCACGCCGTCCTAAATCGGGAGTCGCTTCG
GAAAGTCTTTCACATTCTCAAGGTTGCCTCCATTCCGGTACGTAATATGC
TTTCTACTTTGCTCAACCTGGCATCTACAGCACATACTAACCAGTAATTC
TGTGCTGCTCGTCATTCGGATGCAGATCTTTCCGGATATTGTTGTCATGC
TCTGCCTCCCTTTGGCGATACTGGCATACATGATAGGGGGCTACTTTGTC
ATCCTGGCTCCGGGAAAGCTTTACAACACGCTAGTCAGCGAAGACTGGCC
CCTTTTTCGCAGCGAAATGACCAAGTACGCACTGATTGCAACAGCCGTTT
TGTTTGTTAAAGTTCTCCGGGGCGCACTGCGGGAATCGTCCGCAAACTAC
CTGCGCCTCAGAATCACGAATGCTATCCACTCCCTGTACTTTGCTTCTCA
ACCCCACCTGAACGCGTACAGCCCCCCCGCTTACTACAAACTCATCGCAG
ACAATGAGGTAGACAACCCGGACCAGCGAATAGTTGCAGATGCCCGCGAC
TTTTCAGCCTCGCTGCTGGACATCTTGGCGGGGGGGCGGTCGCAGGGCCA
GGACACCGGCGGTTGCATTGAAGCCGTGGCCTCTCTACTCTTGTACTCCA
ACAAAACGCTGGGGCGCACCGGCTGGTTCGGGATTGTTGTGGCCTACTTG
TGGTCGTCGCTCGTGTCGCTTGGGACCATCTTCGCCGTAAACCGCACGTC
GCCTGTAGTGTTTCGCCAGGAGATGCTCGAGGCTGACTTCCGATACCGAC
ATGCAGAATTTCGTCGTCAGTACGAAGAGATCGCGATGTTGAGGGGCGCT
CCGTTCGAAAAGGACAGGCTCTCAAGCAACTTGAACATGGCCGTGTCCAA
TACTTGGACTGTGATTTCGCGGCATGTTTTCTTGAACTTTGTTCAGTACG
GCTTTGGGTACTACGTATCGCTGATCATGTACTTGGCCTTGGCCTTGGCC
ATTTACACCAATGTGTTCGAGTCCTCTGGTGCGAGCTTCTCGTCGGATAT
GACGCCGGGCGAAAAGGCACAATGGATTTCTCAAACTGGAGGTATCTTCA
TGCAACTCCTGTTTTCATTCACCATGTTGGTTCAACTAGGAACGGTTGCC
AGTGAATTCGTTTCACATGTAAATAGATTGGCAGCTCTGGTAACTGTGCT
TGAGGAGAAGCCCGCATCGCAACTCGACAGGATTGATGACTGTGATGCTG
AACCTCTGATGTCAAGAGCATCACAGGATTATGAGCACTCGTCGTTGATT
TCTTCAACAGATTTCATCCAAGTTGAGGAGCTCGTCGTACAACCCGGAGG
TTCCGTATGCATCGGGCCGATTTCGTTCACTCTCGAAAAGGGTCGTTGGA
TTTTGCTTGATGGGAGAACTGGAACTGGAAAGACAAGCATTGTGAGAGTT
CTTCGCGGCATACGGCCTCCTTCGTCTGGCACGATTCAGATGCCGCAGAA
CCAAGAAACAGTTATGTTTGTGCCGCAAACTCCATACGTTACCTCGGGTA
CATGTTCTTTACGCGAACTGGTCACTTATCCAAAACGGAGTTGTGGGACA
ATAGAAGAAACTAATAGAGTATCCAGGGCTCTGGAGGATGTTGGTTGGCA
CAGAGGTTTACATGGACAATGTTTAGATCTCAAGACGGACTGGTCATGCC
AGATTAGTCCGGGTGAGGCGCAACTGATTGCAGCCTCTCGGGTTTTGTTC
CACAGACCCAGTTTTGTTATTCTGGACGAACCTACAGCCTCGCTTGACGT
TGAGAGCGAAGCAAGAGTAATGACGGCGTTGAAAAGAGCCGGAATATCGT
CTCTAACAGTTGCGCACTCCCCCTCACTAAGACAGCTTCACGATCAAATC
GTAACCTTGGGGCGCCATTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:287462..289382-

>Gvermi7951.t1 ID=Gvermi7951.t1|Name=Gvermi7951.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1833bp|location=Sequence derived from alignment at ScGOVlb_24226:287462..289382- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACGCTTTCCCCTGACAGGCACGCCGTCCTAAATCGGGAGTCGCTTCG
GAAAGTCTTTCACATTCTCAAGGTTGCCTCCATTCCGATCTTTCCGGATA
TTGTTGTCATGCTCTGCCTCCCTTTGGCGATACTGGCATACATGATAGGG
GGCTACTTTGTCATCCTGGCTCCGGGAAAGCTTTACAACACGCTAGTCAG
CGAAGACTGGCCCCTTTTTCGCAGCGAAATGACCAAGTACGCACTGATTG
CAACAGCCGTTTTGTTTGTTAAAGTTCTCCGGGGCGCACTGCGGGAATCG
TCCGCAAACTACCTGCGCCTCAGAATCACGAATGCTATCCACTCCCTGTA
CTTTGCTTCTCAACCCCACCTGAACGCGTACAGCCCCCCCGCTTACTACA
AACTCATCGCAGACAATGAGGTAGACAACCCGGACCAGCGAATAGTTGCA
GATGCCCGCGACTTTTCAGCCTCGCTGCTGGACATCTTGGCGGGGGGGCG
GTCGCAGGGCCAGGACACCGGCGGTTGCATTGAAGCCGTGGCCTCTCTAC
TCTTGTACTCCAACAAAACGCTGGGGCGCACCGGCTGGTTCGGGATTGTT
GTGGCCTACTTGTGGTCGTCGCTCGTGTCGCTTGGGACCATCTTCGCCGT
AAACCGCACGTCGCCTGTAGTGTTTCGCCAGGAGATGCTCGAGGCTGACT
TCCGATACCGACATGCAGAATTTCGTCGTCAGTACGAAGAGATCGCGATG
TTGAGGGGCGCTCCGTTCGAAAAGGACAGGCTCTCAAGCAACTTGAACAT
GGCCGTGTCCAATACTTGGACTGTGATTTCGCGGCATGTTTTCTTGAACT
TTGTTCAGTACGGCTTTGGGTACTACGTATCGCTGATCATGTACTTGGCC
TTGGCCTTGGCCATTTACACCAATGTGTTCGAGTCCTCTGGTGCGAGCTT
CTCGTCGGATATGACGCCGGGCGAAAAGGCACAATGGATTTCTCAAACTG
GAGGTATCTTCATGCAACTCCTGTTTTCATTCACCATGTTGGTTCAACTA
GGAACGGTTGCCAGTGAATTCGTTTCACATGTAAATAGATTGGCAGCTCT
GGTAACTGTGCTTGAGGAGAAGCCCGCATCGCAACTCGACAGGATTGATG
ACTGTGATGCTGAACCTCTGATGTCAAGAGCATCACAGGATTATGAGCAC
TCGTCGTTGATTTCTTCAACAGATTTCATCCAAGTTGAGGAGCTCGTCGT
ACAACCCGGAGGTTCCGTATGCATCGGGCCGATTTCGTTCACTCTCGAAA
AGGGTCGTTGGATTTTGCTTGATGGGAGAACTGGAACTGGAAAGACAAGC
ATTGTGAGAGTTCTTCGCGGCATACGGCCTCCTTCGTCTGGCACGATTCA
GATGCCGCAGAACCAAGAAACAGTTATGTTTGTGCCGCAAACTCCATACG
TTACCTCGGGTACATGTTCTTTACGCGAACTGGTCACTTATCCAAAACGG
AGTTGTGGGACAATAGAAGAAACTAATAGAGTATCCAGGGCTCTGGAGGA
TGTTGGTTGGCACAGAGGTTTACATGGACAATGTTTAGATCTCAAGACGG
ACTGGTCATGCCAGATTAGTCCGGGTGAGGCGCAACTGATTGCAGCCTCT
CGGGTTTTGTTCCACAGACCCAGTTTTGTTATTCTGGACGAACCTACAGC
CTCGCTTGACGTTGAGAGCGAAGCAAGAGTAATGACGGCGTTGAAAAGAG
CCGGAATATCGTCTCTAACAGTTGCGCACTCCCCCTCACTAAGACAGCTT
CACGATCAAATCGTAACCTTGGGGCGCCATTGA
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