Gvermi8028.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8028.t1
Unique NameGvermi8028.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:750905..751576 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog88036.EFJ18720
PFAMsTubulin,Tubulin_C
Max annot lvl35493|Streptophyta
KEGG koko:K07374
KEGG Pathwayko04145,ko04210,ko04530,ko04540,ko05130,map04145,map04210,map04530,map04540,map05130
Evalue1.66e-99
EggNOG OGsCOG5023@1|root,KOG1376@2759|Eukaryota,37JG4@33090|Viridiplantae,3GBTX@35493|Streptophyta
DescriptionTubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain
COG categoryZ
BRITEko00000,ko00001,ko03019,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8028Gvermi8028Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 750905..751576 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8028.t1.start1Gvermi8028.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 750905..750907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8028.t1.CDS1Gvermi8028.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 750905..751576 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8028.t1.exon1Gvermi8028.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 750905..751576 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8028.t1.stop1Gvermi8028.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 751574..751576 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8028.t1Gvermi8028.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 750905..751576 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8028.t1 ID=Gvermi8028.t1|Name=Gvermi8028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=224bp
MREIISLHIGQAGVEVANSHWEIYCMAHGITPDGTISKEKEEKGGSDSFS
TLFSDTSGVKHVPRAVFLDLEPTVVDEVLHGKYPKLYHPGRLITEKEDAA
NNYAGGYYPTGKEIVDTAPDRIRKLATNCSILQGFLVFSSVSEATGSGLG
SLILDRISCDYGKKSMLGFTVDTSLQVSTSFIEPYNSGSATHALLGHLDV
GVVLDNEAIYHICRRSLSIARPT*
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spliced messenger RNA

>Gvermi8028.t1 ID=Gvermi8028.t1|Name=Gvermi8028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_24226:750905..751576+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgcgcgagatcatttctcttcacatcggccaagctggcgtggaagtcgc
taattctcattgggagatctattgcatggcgcatggcatcactccggacg
gaaccatctccaaagagaaggaggaaaagggaggaagcgactctttctcc
actttattttctgacacctctggtgtaaaacacgttccacgtgccgtctt
ccttgaccttgaacccaccgtcgtcgacgaagttcttcatggcaagtacc
ccaagctctatcacccggggcggctcatcaccgaaaaggaagatgccgct
aacaactacgctggtggttattaccctaccgggaaggaaatcgtggacac
cgcccccgaccgcatccgtaagctagcaaccaactgctcgatccttcagg
gcttccttgttttctcctctgttagtgaagctactggatctggtcttgga
tccctgattcttgatcgcatttcatgcgattacggcaagaagtccatgct
cggattcactgttgatacctctctccaggtgtccacctcctttattgaac
cgtacaactctggctcggccacccacgccttgctgggacaccttgatgtg
ggagttgttctcgacaatgaggctatttaccacatctgccgtcgttcttt
gagcattgctcgtccgacgtag
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protein sequence of Gvermi8028.t1

>Gvermi8028.t1 ID=Gvermi8028.t1|Name=Gvermi8028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=224bp
MREIISLHIGQAGVEVANSHWEIYCMAHGITPDGTISKEKEEKGGSDSFS
TLFSDTSGVKHVPRAVFLDLEPTVVDEVLHGKYPKLYHPGRLITEKEDAA
NNYAGGYYPTGKEIVDTAPDRIRKLATNCSILQGFLVFSSVSEATGSGLG
SLILDRISCDYGKKSMLGFTVDTSLQVSTSFIEPYNSGSATHALLGHLDV
GVVLDNEAIYHICRRSLSIARPT*
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mRNA from alignment at ScGOVlb_24226:750905..751576+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8028.t1 ID=Gvermi8028.t1|Name=Gvermi8028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=672bp|location=Sequence derived from alignment at ScGOVlb_24226:750905..751576+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgcgagatcatttctcttcacatcggccaagctggcgtggaagtcgc
taattctcattgggagatctattgcatggcgcatggcatcactccggacg
gaaccatctccaaagagaaggaggaaaagggaggaagcgactctttctcc
actttattttctgacacctctggtgtaaaacacgttccacgtgccgtctt
ccttgaccttgaacccaccgtcgtcgacgaagttcttcatggcaagtacc
ccaagctctatcacccggggcggctcatcaccgaaaaggaagatgccgct
aacaactacgctggtggttattaccctaccgggaaggaaatcgtggacac
cgcccccgaccgcatccgtaagctagcaaccaactgctcgatccttcagg
gcttccttgttttctcctctgttagtgaagctactggatctggtcttgga
tccctgattcttgatcgcatttcatgcgattacggcaagaagtccatgct
cggattcactgttgatacctctctccaggtgtccacctcctttattgaac
cgtacaactctggctcggccacccacgccttgctgggacaccttgatgtg
ggagttgttctcgacaatgaggctatttaccacatctgccgtcgttcttt
gagcattgctcgtccgacgtag
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Coding sequence (CDS) from alignment at ScGOVlb_24226:750905..751576+

>Gvermi8028.t1 ID=Gvermi8028.t1|Name=Gvermi8028.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=672bp|location=Sequence derived from alignment at ScGOVlb_24226:750905..751576+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgcgcgagatcatttctcttcacatcggccaagctggcgtggaagtcgc
taattctcattgggagatctattgcatggcgcatggcatcactccggacg
gaaccatctccaaagagaaggaggaaaagggaggaagcgactctttctcc
actttattttctgacacctctggtgtaaaacacgttccacgtgccgtctt
ccttgaccttgaacccaccgtcgtcgacgaagttcttcatggcaagtacc
ccaagctctatcacccggggcggctcatcaccgaaaaggaagatgccgct
aacaactacgctggtggttattaccctaccgggaaggaaatcgtggacac
cgcccccgaccgcatccgtaagctagcaaccaactgctcgatccttcagg
gcttccttgttttctcctctgttagtgaagctactggatctggtcttgga
tccctgattcttgatcgcatttcatgcgattacggcaagaagtccatgct
cggattcactgttgatacctctctccaggtgtccacctcctttattgaac
cgtacaactctggctcggccacccacgccttgctgggacaccttgatgtg
ggagttgttctcgacaatgaggctatttaccacatctgccgtcgttcttt
gagcattgctcgtccgacgtag
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