Gvermi8155.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8155.t1
Unique NameGvermi8155.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1312696..1314231 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8155Gvermi8155Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1312696..1314231 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8155.t1.stop1Gvermi8155.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1312696..1312698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8155.t1.CDS1Gvermi8155.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1312696..1314231 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8155.t1.exon1Gvermi8155.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1312696..1314231 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8155.t1.start1Gvermi8155.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1314229..1314231 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8155.t1Gvermi8155.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1312696..1314231 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8155.t1 ID=Gvermi8155.t1|Name=Gvermi8155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=512bp
MIINQNIIDTSTTLKQCLTELPKEEPKNLTFDDADQPPDSVLFAAALVVL
TVTLIDITVFVKTRRRLKYFFLLLFITFVALTILWSEHVVEVVFQASALV
RDTKWVWIASQCYKKFEVIQKWNFQPWMPLVTDTFRIIATGLESFVILLG
IIQDYCVKRRLNRRKLFISAVVIAVSGGLAACIMIRARSAVYGCSYSPQI
DRYTCRVRDQAYAKKVLTADQVKQCDAKTQVQINNPAPISRLKLNQKDPG
RNIPECTKNDGEAIMLGGFGRHALLNRFFSEAAIISSIFLAILILSIIFE
FYIIVKSIIFRRNIRFPFLMITLASIVLKDLYPLFSGIRKVHDRTESFRL
VTCGCMLLNFREFNSELRESVWELVVLVFIIDVAVAFSKEIDGKGIHPDL
EDGVDGMNSGGEMSNSGQSDTVALPVHSSPPGKVQAEPVNAIESGTQNVD
QPQDGAQEQEQEQEQEHDYPTFYIQPPESLRPRDLFNFASKLVKEARNGN
LRPNHLMKPKT*
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spliced messenger RNA

>Gvermi8155.t1 ID=Gvermi8155.t1|Name=Gvermi8155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at ScGOVlb_24226:1312696..1314231- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTATAAATCAGAATATCATAGACACTTCCACAACATTGAAGCAATG
TCTTACGGAACTGCCAAAAGAAGAGCCGAAAAATCTTACTTTCGATGACG
CCGATCAGCCCCCAGATTCAGTCTTGTTCGCCGCTGCTTTAGTTGTACTC
ACTGTCACACTTATTGACATTACTGTGTTCGTTAAAACAAGGAGAAGGCT
CAAGTACTTCTTCTTACTGCTTTTCATTACCTTCGTTGCTCTCACTATTC
TTTGGTCGGAACATGTGGTTGAAGTTGTATTCCAAGCAAGCGCTTTAGTG
CGCGATACAAAGTGGGTGTGGATTGCGTCCCAATGTTACAAGAAGTTTGA
AGTCATACAGAAGTGGAACTTTCAGCCTTGGATGCCGCTTGTTACTGATA
CTTTCCGAATCATTGCCACAGGTCTGGAATCCTTTGTCATCTTGCTCGGT
ATCATTCAAGACTACTGCGTGAAAAGAAGACTCAATAGGAGAAAACTCTT
TATATCCGCAGTCGTAATAGCGGTCTCCGGAGGACTGGCGGCTTGCATCA
TGATTCGAGCTCGTAGTGCCGTGTACGGATGTTCATATAGTCCCCAAATT
GATCGCTACACATGCCGCGTGCGTGATCAAGCATACGCCAAGAAAGTGTT
AACTGCGGATCAAGTCAAACAGTGCGATGCAAAAACTCAAGTCCAAATCA
ACAATCCTGCCCCGATCTCCAGGTTAAAGCTGAATCAAAAGGATCCTGGT
CGAAATATCCCCGAATGCACGAAAAATGACGGAGAGGCCATTATGCTCGG
CGGCTTTGGTAGACACGCGTTACTCAACCGATTTTTTTCGGAAGCCGCGA
TCATCTCTTCGATTTTTCTCGCCATCCTTATTTTATCAATCATATTCGAA
TTCTACATCATTGTCAAGAGCATCATTTTTCGGCGTAACATACGGTTCCC
TTTCCTTATGATAACTTTAGCTTCCATTGTGTTGAAAGATCTTTACCCGT
TGTTCTCAGGCATCCGGAAAGTTCACGACAGAACAGAAAGTTTTCGATTA
GTCACTTGCGGCTGTATGCTACTAAATTTCAGGGAATTCAACTCTGAGTT
GCGAGAATCAGTGTGGGAGTTAGTGGTTTTGGTGTTCATCATCGACGTGG
CAGTTGCTTTCTCAAAAGAGATTGATGGAAAGGGAATACATCCTGATCTG
GAGGATGGTGTAGATGGTATGAACTCGGGTGGAGAGATGTCCAATTCTGG
TCAAAGTGATACTGTTGCGCTTCCAGTCCATTCTTCGCCACCTGGAAAAG
TTCAAGCAGAACCAGTGAACGCCATTGAATCAGGCACCCAGAACGTCGAT
CAACCACAAGATGGAGCCCAAGAGCAAGAACAAGAGCAAGAACAAGAACA
TGATTACCCGACGTTTTATATTCAACCACCTGAAAGCCTCCGACCTCGAG
ACTTGTTCAATTTCGCGTCCAAACTTGTGAAAGAAGCCCGAAACGGGAAT
CTGCGACCTAACCATCTCATGAAGCCGAAGACGTGA
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protein sequence of Gvermi8155.t1

>Gvermi8155.t1 ID=Gvermi8155.t1|Name=Gvermi8155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=512bp
MIINQNIIDTSTTLKQCLTELPKEEPKNLTFDDADQPPDSVLFAAALVVL
TVTLIDITVFVKTRRRLKYFFLLLFITFVALTILWSEHVVEVVFQASALV
RDTKWVWIASQCYKKFEVIQKWNFQPWMPLVTDTFRIIATGLESFVILLG
IIQDYCVKRRLNRRKLFISAVVIAVSGGLAACIMIRARSAVYGCSYSPQI
DRYTCRVRDQAYAKKVLTADQVKQCDAKTQVQINNPAPISRLKLNQKDPG
RNIPECTKNDGEAIMLGGFGRHALLNRFFSEAAIISSIFLAILILSIIFE
FYIIVKSIIFRRNIRFPFLMITLASIVLKDLYPLFSGIRKVHDRTESFRL
VTCGCMLLNFREFNSELRESVWELVVLVFIIDVAVAFSKEIDGKGIHPDL
EDGVDGMNSGGEMSNSGQSDTVALPVHSSPPGKVQAEPVNAIESGTQNVD
QPQDGAQEQEQEQEQEHDYPTFYIQPPESLRPRDLFNFASKLVKEARNGN
LRPNHLMKPKT*
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mRNA from alignment at ScGOVlb_24226:1312696..1314231-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8155.t1 ID=Gvermi8155.t1|Name=Gvermi8155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1536bp|location=Sequence derived from alignment at ScGOVlb_24226:1312696..1314231- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTATAAATCAGAATATCATAGACACTTCCACAACATTGAAGCAATG
TCTTACGGAACTGCCAAAAGAAGAGCCGAAAAATCTTACTTTCGATGACG
CCGATCAGCCCCCAGATTCAGTCTTGTTCGCCGCTGCTTTAGTTGTACTC
ACTGTCACACTTATTGACATTACTGTGTTCGTTAAAACAAGGAGAAGGCT
CAAGTACTTCTTCTTACTGCTTTTCATTACCTTCGTTGCTCTCACTATTC
TTTGGTCGGAACATGTGGTTGAAGTTGTATTCCAAGCAAGCGCTTTAGTG
CGCGATACAAAGTGGGTGTGGATTGCGTCCCAATGTTACAAGAAGTTTGA
AGTCATACAGAAGTGGAACTTTCAGCCTTGGATGCCGCTTGTTACTGATA
CTTTCCGAATCATTGCCACAGGTCTGGAATCCTTTGTCATCTTGCTCGGT
ATCATTCAAGACTACTGCGTGAAAAGAAGACTCAATAGGAGAAAACTCTT
TATATCCGCAGTCGTAATAGCGGTCTCCGGAGGACTGGCGGCTTGCATCA
TGATTCGAGCTCGTAGTGCCGTGTACGGATGTTCATATAGTCCCCAAATT
GATCGCTACACATGCCGCGTGCGTGATCAAGCATACGCCAAGAAAGTGTT
AACTGCGGATCAAGTCAAACAGTGCGATGCAAAAACTCAAGTCCAAATCA
ACAATCCTGCCCCGATCTCCAGGTTAAAGCTGAATCAAAAGGATCCTGGT
CGAAATATCCCCGAATGCACGAAAAATGACGGAGAGGCCATTATGCTCGG
CGGCTTTGGTAGACACGCGTTACTCAACCGATTTTTTTCGGAAGCCGCGA
TCATCTCTTCGATTTTTCTCGCCATCCTTATTTTATCAATCATATTCGAA
TTCTACATCATTGTCAAGAGCATCATTTTTCGGCGTAACATACGGTTCCC
TTTCCTTATGATAACTTTAGCTTCCATTGTGTTGAAAGATCTTTACCCGT
TGTTCTCAGGCATCCGGAAAGTTCACGACAGAACAGAAAGTTTTCGATTA
GTCACTTGCGGCTGTATGCTACTAAATTTCAGGGAATTCAACTCTGAGTT
GCGAGAATCAGTGTGGGAGTTAGTGGTTTTGGTGTTCATCATCGACGTGG
CAGTTGCTTTCTCAAAAGAGATTGATGGAAAGGGAATACATCCTGATCTG
GAGGATGGTGTAGATGGTATGAACTCGGGTGGAGAGATGTCCAATTCTGG
TCAAAGTGATACTGTTGCGCTTCCAGTCCATTCTTCGCCACCTGGAAAAG
TTCAAGCAGAACCAGTGAACGCCATTGAATCAGGCACCCAGAACGTCGAT
CAACCACAAGATGGAGCCCAAGAGCAAGAACAAGAGCAAGAACAAGAACA
TGATTACCCGACGTTTTATATTCAACCACCTGAAAGCCTCCGACCTCGAG
ACTTGTTCAATTTCGCGTCCAAACTTGTGAAAGAAGCCCGAAACGGGAAT
CTGCGACCTAACCATCTCATGAAGCCGAAGACGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1312696..1314231-

>Gvermi8155.t1 ID=Gvermi8155.t1|Name=Gvermi8155.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1536bp|location=Sequence derived from alignment at ScGOVlb_24226:1312696..1314231- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATTATAAATCAGAATATCATAGACACTTCCACAACATTGAAGCAATG
TCTTACGGAACTGCCAAAAGAAGAGCCGAAAAATCTTACTTTCGATGACG
CCGATCAGCCCCCAGATTCAGTCTTGTTCGCCGCTGCTTTAGTTGTACTC
ACTGTCACACTTATTGACATTACTGTGTTCGTTAAAACAAGGAGAAGGCT
CAAGTACTTCTTCTTACTGCTTTTCATTACCTTCGTTGCTCTCACTATTC
TTTGGTCGGAACATGTGGTTGAAGTTGTATTCCAAGCAAGCGCTTTAGTG
CGCGATACAAAGTGGGTGTGGATTGCGTCCCAATGTTACAAGAAGTTTGA
AGTCATACAGAAGTGGAACTTTCAGCCTTGGATGCCGCTTGTTACTGATA
CTTTCCGAATCATTGCCACAGGTCTGGAATCCTTTGTCATCTTGCTCGGT
ATCATTCAAGACTACTGCGTGAAAAGAAGACTCAATAGGAGAAAACTCTT
TATATCCGCAGTCGTAATAGCGGTCTCCGGAGGACTGGCGGCTTGCATCA
TGATTCGAGCTCGTAGTGCCGTGTACGGATGTTCATATAGTCCCCAAATT
GATCGCTACACATGCCGCGTGCGTGATCAAGCATACGCCAAGAAAGTGTT
AACTGCGGATCAAGTCAAACAGTGCGATGCAAAAACTCAAGTCCAAATCA
ACAATCCTGCCCCGATCTCCAGGTTAAAGCTGAATCAAAAGGATCCTGGT
CGAAATATCCCCGAATGCACGAAAAATGACGGAGAGGCCATTATGCTCGG
CGGCTTTGGTAGACACGCGTTACTCAACCGATTTTTTTCGGAAGCCGCGA
TCATCTCTTCGATTTTTCTCGCCATCCTTATTTTATCAATCATATTCGAA
TTCTACATCATTGTCAAGAGCATCATTTTTCGGCGTAACATACGGTTCCC
TTTCCTTATGATAACTTTAGCTTCCATTGTGTTGAAAGATCTTTACCCGT
TGTTCTCAGGCATCCGGAAAGTTCACGACAGAACAGAAAGTTTTCGATTA
GTCACTTGCGGCTGTATGCTACTAAATTTCAGGGAATTCAACTCTGAGTT
GCGAGAATCAGTGTGGGAGTTAGTGGTTTTGGTGTTCATCATCGACGTGG
CAGTTGCTTTCTCAAAAGAGATTGATGGAAAGGGAATACATCCTGATCTG
GAGGATGGTGTAGATGGTATGAACTCGGGTGGAGAGATGTCCAATTCTGG
TCAAAGTGATACTGTTGCGCTTCCAGTCCATTCTTCGCCACCTGGAAAAG
TTCAAGCAGAACCAGTGAACGCCATTGAATCAGGCACCCAGAACGTCGAT
CAACCACAAGATGGAGCCCAAGAGCAAGAACAAGAGCAAGAACAAGAACA
TGATTACCCGACGTTTTATATTCAACCACCTGAAAGCCTCCGACCTCGAG
ACTTGTTCAATTTCGCGTCCAAACTTGTGAAAGAAGCCCGAAACGGGAAT
CTGCGACCTAACCATCTCATGAAGCCGAAGACGTGA
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