Gvermi8149.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8149.t1
Unique NameGvermi8149.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length350
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:1242695..1243744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1455608.JDTH01000006_gene2547
PFAMsMethyltransf_11,Methyltransf_23,Methyltransf_25
Max annot lvl183963|Halobacteria
Evalue3.2e-36
EggNOG OGsarCOG04526@1|root,arCOG04526@2157|Archaea,2XV7A@28890|Euryarchaeota,23W0N@183963|Halobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8149Gvermi8149Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 1242695..1243744 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8149.t1.stop1Gvermi8149.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 1242695..1242697 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8149.t1.CDS1Gvermi8149.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 1242695..1243744 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8149.t1.exon1Gvermi8149.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 1242695..1243744 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8149.t1.start1Gvermi8149.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 1243742..1243744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8149.t1Gvermi8149.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 1242695..1243744 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8149.t1 ID=Gvermi8149.t1|Name=Gvermi8149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=350bp
MDYVRYLRAKRSVDDRAINLRVLHEFETYLHRTAKRRPGDTLRVVEVGAG
VGDMFQRLWRRNALFTVSGSVHYTLLDVKAELLEFARQSIASEFLPHSAD
PHLNRISVKLSSSSIADGSGIHHKGLGDKDRLDMLEDLSISDRIKVSFVI
GDALNYFQTHKACFDVVIASAVLDLWELESAIQLLLDALDASSGVNAFYF
PINFDGTTSFYPESCEGDAYDNCVEDEFHAAMGRRSVHGKQVQACHTGRW
LAPVLQRKNAVVTSVGSSSWIVHPNNDGCYEVDEGFFLSCILDFVEATLN
DKTIDKANNESQSFQNYVQYRRKQLKEGKLFYLAHNVDICGHLPMPNQA*
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spliced messenger RNA

>Gvermi8149.t1 ID=Gvermi8149.t1|Name=Gvermi8149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24226:1242695..1243744- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTACGTGAGGTACTTGAGGGCGAAGCGCTCCGTCGACGACCGCGC
CATAAATTTGAGGGTGCTGCATGAGTTCGAAACTTACCTTCATCGCACCG
CGAAACGACGCCCAGGCGACACGCTTCGCGTCGTCGAAGTGGGCGCAGGT
GTGGGCGATATGTTTCAGCGACTTTGGCGAAGAAACGCGCTGTTCACTGT
TTCTGGTTCTGTTCATTACACCCTTTTAGATGTTAAAGCGGAACTGCTCG
AGTTTGCGCGCCAGAGTATAGCATCGGAGTTCTTGCCTCACAGCGCTGAT
CCGCACCTCAATCGCATTTCCGTCAAACTATCTTCCTCTTCAATTGCTGA
TGGATCGGGAATACATCACAAAGGCCTTGGTGATAAAGATCGGCTTGATA
TGCTTGAAGACCTATCAATCTCCGACAGAATAAAGGTCAGCTTTGTAATT
GGCGACGCTCTGAACTACTTTCAAACCCATAAGGCCTGTTTTGACGTGGT
AATAGCTTCTGCGGTTCTTGATCTTTGGGAACTTGAATCTGCCATACAGC
TTCTCCTTGACGCCCTTGATGCATCTTCGGGTGTGAATGCATTTTACTTC
CCGATTAATTTTGACGGGACGACCAGCTTTTATCCAGAATCATGTGAAGG
GGACGCTTACGATAACTGTGTAGAAGACGAATTTCATGCAGCAATGGGCA
GAAGGTCGGTCCATGGAAAGCAAGTGCAAGCCTGTCATACTGGTCGATGG
TTAGCTCCCGTACTACAGCGTAAGAATGCCGTTGTGACCTCGGTAGGCAG
CTCCTCCTGGATTGTGCATCCAAACAACGATGGCTGTTACGAAGTCGATG
AGGGTTTCTTCCTCAGCTGCATTCTCGACTTTGTTGAAGCGACACTAAAT
GACAAAACCATTGACAAGGCAAACAACGAATCGCAATCGTTCCAGAATTA
TGTACAGTATCGGAGAAAACAACTGAAAGAGGGAAAACTTTTTTATCTTG
CCCACAACGTCGATATTTGCGGCCATTTGCCGATGCCAAATCAGGCTTGA
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protein sequence of Gvermi8149.t1

>Gvermi8149.t1 ID=Gvermi8149.t1|Name=Gvermi8149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=350bp
MDYVRYLRAKRSVDDRAINLRVLHEFETYLHRTAKRRPGDTLRVVEVGAG
VGDMFQRLWRRNALFTVSGSVHYTLLDVKAELLEFARQSIASEFLPHSAD
PHLNRISVKLSSSSIADGSGIHHKGLGDKDRLDMLEDLSISDRIKVSFVI
GDALNYFQTHKACFDVVIASAVLDLWELESAIQLLLDALDASSGVNAFYF
PINFDGTTSFYPESCEGDAYDNCVEDEFHAAMGRRSVHGKQVQACHTGRW
LAPVLQRKNAVVTSVGSSSWIVHPNNDGCYEVDEGFFLSCILDFVEATLN
DKTIDKANNESQSFQNYVQYRRKQLKEGKLFYLAHNVDICGHLPMPNQA*
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mRNA from alignment at ScGOVlb_24226:1242695..1243744-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8149.t1 ID=Gvermi8149.t1|Name=Gvermi8149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24226:1242695..1243744- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTACGTGAGGTACTTGAGGGCGAAGCGCTCCGTCGACGACCGCGC
CATAAATTTGAGGGTGCTGCATGAGTTCGAAACTTACCTTCATCGCACCG
CGAAACGACGCCCAGGCGACACGCTTCGCGTCGTCGAAGTGGGCGCAGGT
GTGGGCGATATGTTTCAGCGACTTTGGCGAAGAAACGCGCTGTTCACTGT
TTCTGGTTCTGTTCATTACACCCTTTTAGATGTTAAAGCGGAACTGCTCG
AGTTTGCGCGCCAGAGTATAGCATCGGAGTTCTTGCCTCACAGCGCTGAT
CCGCACCTCAATCGCATTTCCGTCAAACTATCTTCCTCTTCAATTGCTGA
TGGATCGGGAATACATCACAAAGGCCTTGGTGATAAAGATCGGCTTGATA
TGCTTGAAGACCTATCAATCTCCGACAGAATAAAGGTCAGCTTTGTAATT
GGCGACGCTCTGAACTACTTTCAAACCCATAAGGCCTGTTTTGACGTGGT
AATAGCTTCTGCGGTTCTTGATCTTTGGGAACTTGAATCTGCCATACAGC
TTCTCCTTGACGCCCTTGATGCATCTTCGGGTGTGAATGCATTTTACTTC
CCGATTAATTTTGACGGGACGACCAGCTTTTATCCAGAATCATGTGAAGG
GGACGCTTACGATAACTGTGTAGAAGACGAATTTCATGCAGCAATGGGCA
GAAGGTCGGTCCATGGAAAGCAAGTGCAAGCCTGTCATACTGGTCGATGG
TTAGCTCCCGTACTACAGCGTAAGAATGCCGTTGTGACCTCGGTAGGCAG
CTCCTCCTGGATTGTGCATCCAAACAACGATGGCTGTTACGAAGTCGATG
AGGGTTTCTTCCTCAGCTGCATTCTCGACTTTGTTGAAGCGACACTAAAT
GACAAAACCATTGACAAGGCAAACAACGAATCGCAATCGTTCCAGAATTA
TGTACAGTATCGGAGAAAACAACTGAAAGAGGGAAAACTTTTTTATCTTG
CCCACAACGTCGATATTTGCGGCCATTTGCCGATGCCAAATCAGGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:1242695..1243744-

>Gvermi8149.t1 ID=Gvermi8149.t1|Name=Gvermi8149.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1050bp|location=Sequence derived from alignment at ScGOVlb_24226:1242695..1243744- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTACGTGAGGTACTTGAGGGCGAAGCGCTCCGTCGACGACCGCGC
CATAAATTTGAGGGTGCTGCATGAGTTCGAAACTTACCTTCATCGCACCG
CGAAACGACGCCCAGGCGACACGCTTCGCGTCGTCGAAGTGGGCGCAGGT
GTGGGCGATATGTTTCAGCGACTTTGGCGAAGAAACGCGCTGTTCACTGT
TTCTGGTTCTGTTCATTACACCCTTTTAGATGTTAAAGCGGAACTGCTCG
AGTTTGCGCGCCAGAGTATAGCATCGGAGTTCTTGCCTCACAGCGCTGAT
CCGCACCTCAATCGCATTTCCGTCAAACTATCTTCCTCTTCAATTGCTGA
TGGATCGGGAATACATCACAAAGGCCTTGGTGATAAAGATCGGCTTGATA
TGCTTGAAGACCTATCAATCTCCGACAGAATAAAGGTCAGCTTTGTAATT
GGCGACGCTCTGAACTACTTTCAAACCCATAAGGCCTGTTTTGACGTGGT
AATAGCTTCTGCGGTTCTTGATCTTTGGGAACTTGAATCTGCCATACAGC
TTCTCCTTGACGCCCTTGATGCATCTTCGGGTGTGAATGCATTTTACTTC
CCGATTAATTTTGACGGGACGACCAGCTTTTATCCAGAATCATGTGAAGG
GGACGCTTACGATAACTGTGTAGAAGACGAATTTCATGCAGCAATGGGCA
GAAGGTCGGTCCATGGAAAGCAAGTGCAAGCCTGTCATACTGGTCGATGG
TTAGCTCCCGTACTACAGCGTAAGAATGCCGTTGTGACCTCGGTAGGCAG
CTCCTCCTGGATTGTGCATCCAAACAACGATGGCTGTTACGAAGTCGATG
AGGGTTTCTTCCTCAGCTGCATTCTCGACTTTGTTGAAGCGACACTAAAT
GACAAAACCATTGACAAGGCAAACAACGAATCGCAATCGTTCCAGAATTA
TGTACAGTATCGGAGAAAACAACTGAAAGAGGGAAAACTTTTTTATCTTG
CCCACAACGTCGATATTTGCGGCCATTTGCCGATGCCAAATCAGGCTTGA
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