Gvermi7976.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7976.t1
Unique NameGvermi7976.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length533
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24226contigScGOVlb_24226:419075..420673 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7976Gvermi7976Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24226 419075..420673 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7976.t1.start1Gvermi7976.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24226 419075..419077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7976.t1.CDS1Gvermi7976.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24226 419075..420673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7976.t1.exon1Gvermi7976.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24226 419075..420673 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7976.t1.stop1Gvermi7976.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24226 420671..420673 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7976.t1Gvermi7976.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24226 419075..420673 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7976.t1 ID=Gvermi7976.t1|Name=Gvermi7976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=533bp
MASDSANAFLIRIKGGTHFRGTKPFIVTCLDNELSNELHRTRAVDGARFV
AWNEAFVVDISKYCQTQHSQPQHLTFVFIDANKAGMSSLGYVQLSLQNIR
SSELEEVTENIRGGKGTITFSTTPVKQKGSVLSQYAEHVKGYFYSIFDAN
TSDAPASNQAETVFVRAADSVKGVAASAKETAQSKLSSVRGQKDSAANAV
EDRSADVDCSKAGASEGATTPSRLGAVQHLVHTNVQQTKQAFGKLVDKVR
PSEKIEQKQGGASEPSNTDGAEGPSTPSRLGAVEDMVQTKVAHTKEGLAK
MAERVKGRGATDEKQGETESPPSGESAVGGSDAKQSAHSSRLDAAETLMH
TKVEQAKEGIAKALDRVKAGKATGEPAGDLSDATSTNDENDKQSRLSAAG
DLLHSRIEQTKEEVAKVMERAKAHEKGEVSKDASDLGGASSAVEDGDAGV
KQSAATSRKESIQHVVETKVEQAKHGMWKLFEKAKQDKQDFLSKDDGGGD
SAKPSSTTLVRRKTDGDKADDKVSDTGDGGVQ*
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spliced messenger RNA

>Gvermi7976.t1 ID=Gvermi7976.t1|Name=Gvermi7976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at ScGOVlb_24226:419075..420673+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATCCGACTCGGCAAACGCCTTTCTCATTCGAATCAAGGGCGGCAC
TCATTTCCGGGGCACCAAGCCGTTCATCGTCACCTGCCTCGACAACGAGC
TTTCGAATGAGCTTCACCGCACGAGGGCCGTGGACGGCGCCCGCTTCGTG
GCCTGGAACGAAGCCTTCGTCGTTGACATATCAAAATACTGCCAAACGCA
GCACAGCCAACCGCAACACTTGACGTTTGTTTTTATAGACGCCAATAAAG
CGGGCATGTCCTCTCTTGGCTACGTTCAGCTCTCGCTGCAAAACATCCGC
TCCTCCGAGCTGGAGGAAGTAACCGAGAACATCAGGGGAGGAAAGGGAAC
TATCACTTTTAGCACCACGCCGGTGAAACAAAAGGGGTCGGTGCTCAGTC
AGTATGCGGAGCACGTAAAGGGGTATTTCTACAGTATATTCGATGCAAAC
ACGTCGGATGCACCAGCCTCGAACCAGGCCGAAACGGTGTTTGTCAGGGC
GGCGGACTCCGTGAAAGGAGTGGCGGCCTCCGCCAAGGAAACAGCGCAGT
CCAAATTGTCCTCGGTTCGAGGTCAGAAGGACTCTGCCGCAAACGCTGTC
GAAGACAGATCCGCAGATGTTGACTGCAGTAAGGCTGGAGCGAGTGAGGG
AGCTACTACACCCTCACGGCTGGGAGCTGTGCAACATTTGGTTCACACAA
ACGTCCAGCAGACAAAGCAGGCGTTTGGAAAGCTTGTGGATAAGGTGAGA
CCGAGCGAGAAAATTGAGCAGAAACAGGGTGGCGCCAGTGAGCCCAGCAA
CACAGATGGCGCCGAGGGACCAAGCACTCCTTCTCGCCTGGGCGCCGTGG
AAGACATGGTGCAAACTAAGGTGGCGCACACTAAAGAAGGACTGGCAAAA
ATGGCGGAGCGAGTAAAAGGACGCGGTGCCACTGACGAAAAGCAGGGTGA
GACTGAGAGCCCGCCCAGTGGCGAGAGTGCGGTTGGCGGTTCAGATGCAA
AACAGTCCGCACATTCATCTCGACTGGATGCTGCGGAAACTTTGATGCAC
ACAAAGGTGGAGCAGGCCAAGGAGGGAATCGCAAAAGCGTTGGACAGAGT
GAAAGCTGGCAAAGCAACAGGCGAGCCTGCAGGCGACCTCAGCGACGCCA
CCAGCACCAATGACGAGAATGACAAGCAATCTCGGTTGAGTGCGGCGGGA
GATTTGCTTCACTCAAGGATTGAACAGACTAAGGAGGAGGTAGCAAAAGT
GATGGAGAGGGCAAAAGCACACGAAAAGGGGGAGGTTTCGAAGGATGCAA
GTGATCTGGGTGGTGCCTCCAGCGCAGTCGAAGATGGAGACGCCGGCGTC
AAACAGTCGGCGGCGACATCTCGAAAAGAATCGATACAGCATGTGGTTGA
GACAAAGGTGGAACAGGCAAAACACGGAATGTGGAAGCTTTTTGAAAAGG
CCAAACAGGACAAGCAAGATTTTTTATCAAAAGATGACGGAGGCGGTGAT
AGCGCAAAACCGAGCTCCACGACTTTAGTGCGCAGAAAAACGGATGGTGA
CAAGGCAGACGATAAGGTTAGCGACACCGGGGACGGAGGGGTACAGTGA
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protein sequence of Gvermi7976.t1

>Gvermi7976.t1 ID=Gvermi7976.t1|Name=Gvermi7976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=533bp
MASDSANAFLIRIKGGTHFRGTKPFIVTCLDNELSNELHRTRAVDGARFV
AWNEAFVVDISKYCQTQHSQPQHLTFVFIDANKAGMSSLGYVQLSLQNIR
SSELEEVTENIRGGKGTITFSTTPVKQKGSVLSQYAEHVKGYFYSIFDAN
TSDAPASNQAETVFVRAADSVKGVAASAKETAQSKLSSVRGQKDSAANAV
EDRSADVDCSKAGASEGATTPSRLGAVQHLVHTNVQQTKQAFGKLVDKVR
PSEKIEQKQGGASEPSNTDGAEGPSTPSRLGAVEDMVQTKVAHTKEGLAK
MAERVKGRGATDEKQGETESPPSGESAVGGSDAKQSAHSSRLDAAETLMH
TKVEQAKEGIAKALDRVKAGKATGEPAGDLSDATSTNDENDKQSRLSAAG
DLLHSRIEQTKEEVAKVMERAKAHEKGEVSKDASDLGGASSAVEDGDAGV
KQSAATSRKESIQHVVETKVEQAKHGMWKLFEKAKQDKQDFLSKDDGGGD
SAKPSSTTLVRRKTDGDKADDKVSDTGDGGVQ*
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mRNA from alignment at ScGOVlb_24226:419075..420673+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7976.t1 ID=Gvermi7976.t1|Name=Gvermi7976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1599bp|location=Sequence derived from alignment at ScGOVlb_24226:419075..420673+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCCGACTCGGCAAACGCCTTTCTCATTCGAATCAAGGGCGGCAC
TCATTTCCGGGGCACCAAGCCGTTCATCGTCACCTGCCTCGACAACGAGC
TTTCGAATGAGCTTCACCGCACGAGGGCCGTGGACGGCGCCCGCTTCGTG
GCCTGGAACGAAGCCTTCGTCGTTGACATATCAAAATACTGCCAAACGCA
GCACAGCCAACCGCAACACTTGACGTTTGTTTTTATAGACGCCAATAAAG
CGGGCATGTCCTCTCTTGGCTACGTTCAGCTCTCGCTGCAAAACATCCGC
TCCTCCGAGCTGGAGGAAGTAACCGAGAACATCAGGGGAGGAAAGGGAAC
TATCACTTTTAGCACCACGCCGGTGAAACAAAAGGGGTCGGTGCTCAGTC
AGTATGCGGAGCACGTAAAGGGGTATTTCTACAGTATATTCGATGCAAAC
ACGTCGGATGCACCAGCCTCGAACCAGGCCGAAACGGTGTTTGTCAGGGC
GGCGGACTCCGTGAAAGGAGTGGCGGCCTCCGCCAAGGAAACAGCGCAGT
CCAAATTGTCCTCGGTTCGAGGTCAGAAGGACTCTGCCGCAAACGCTGTC
GAAGACAGATCCGCAGATGTTGACTGCAGTAAGGCTGGAGCGAGTGAGGG
AGCTACTACACCCTCACGGCTGGGAGCTGTGCAACATTTGGTTCACACAA
ACGTCCAGCAGACAAAGCAGGCGTTTGGAAAGCTTGTGGATAAGGTGAGA
CCGAGCGAGAAAATTGAGCAGAAACAGGGTGGCGCCAGTGAGCCCAGCAA
CACAGATGGCGCCGAGGGACCAAGCACTCCTTCTCGCCTGGGCGCCGTGG
AAGACATGGTGCAAACTAAGGTGGCGCACACTAAAGAAGGACTGGCAAAA
ATGGCGGAGCGAGTAAAAGGACGCGGTGCCACTGACGAAAAGCAGGGTGA
GACTGAGAGCCCGCCCAGTGGCGAGAGTGCGGTTGGCGGTTCAGATGCAA
AACAGTCCGCACATTCATCTCGACTGGATGCTGCGGAAACTTTGATGCAC
ACAAAGGTGGAGCAGGCCAAGGAGGGAATCGCAAAAGCGTTGGACAGAGT
GAAAGCTGGCAAAGCAACAGGCGAGCCTGCAGGCGACCTCAGCGACGCCA
CCAGCACCAATGACGAGAATGACAAGCAATCTCGGTTGAGTGCGGCGGGA
GATTTGCTTCACTCAAGGATTGAACAGACTAAGGAGGAGGTAGCAAAAGT
GATGGAGAGGGCAAAAGCACACGAAAAGGGGGAGGTTTCGAAGGATGCAA
GTGATCTGGGTGGTGCCTCCAGCGCAGTCGAAGATGGAGACGCCGGCGTC
AAACAGTCGGCGGCGACATCTCGAAAAGAATCGATACAGCATGTGGTTGA
GACAAAGGTGGAACAGGCAAAACACGGAATGTGGAAGCTTTTTGAAAAGG
CCAAACAGGACAAGCAAGATTTTTTATCAAAAGATGACGGAGGCGGTGAT
AGCGCAAAACCGAGCTCCACGACTTTAGTGCGCAGAAAAACGGATGGTGA
CAAGGCAGACGATAAGGTTAGCGACACCGGGGACGGAGGGGTACAGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_24226:419075..420673+

>Gvermi7976.t1 ID=Gvermi7976.t1|Name=Gvermi7976.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1599bp|location=Sequence derived from alignment at ScGOVlb_24226:419075..420673+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCATCCGACTCGGCAAACGCCTTTCTCATTCGAATCAAGGGCGGCAC
TCATTTCCGGGGCACCAAGCCGTTCATCGTCACCTGCCTCGACAACGAGC
TTTCGAATGAGCTTCACCGCACGAGGGCCGTGGACGGCGCCCGCTTCGTG
GCCTGGAACGAAGCCTTCGTCGTTGACATATCAAAATACTGCCAAACGCA
GCACAGCCAACCGCAACACTTGACGTTTGTTTTTATAGACGCCAATAAAG
CGGGCATGTCCTCTCTTGGCTACGTTCAGCTCTCGCTGCAAAACATCCGC
TCCTCCGAGCTGGAGGAAGTAACCGAGAACATCAGGGGAGGAAAGGGAAC
TATCACTTTTAGCACCACGCCGGTGAAACAAAAGGGGTCGGTGCTCAGTC
AGTATGCGGAGCACGTAAAGGGGTATTTCTACAGTATATTCGATGCAAAC
ACGTCGGATGCACCAGCCTCGAACCAGGCCGAAACGGTGTTTGTCAGGGC
GGCGGACTCCGTGAAAGGAGTGGCGGCCTCCGCCAAGGAAACAGCGCAGT
CCAAATTGTCCTCGGTTCGAGGTCAGAAGGACTCTGCCGCAAACGCTGTC
GAAGACAGATCCGCAGATGTTGACTGCAGTAAGGCTGGAGCGAGTGAGGG
AGCTACTACACCCTCACGGCTGGGAGCTGTGCAACATTTGGTTCACACAA
ACGTCCAGCAGACAAAGCAGGCGTTTGGAAAGCTTGTGGATAAGGTGAGA
CCGAGCGAGAAAATTGAGCAGAAACAGGGTGGCGCCAGTGAGCCCAGCAA
CACAGATGGCGCCGAGGGACCAAGCACTCCTTCTCGCCTGGGCGCCGTGG
AAGACATGGTGCAAACTAAGGTGGCGCACACTAAAGAAGGACTGGCAAAA
ATGGCGGAGCGAGTAAAAGGACGCGGTGCCACTGACGAAAAGCAGGGTGA
GACTGAGAGCCCGCCCAGTGGCGAGAGTGCGGTTGGCGGTTCAGATGCAA
AACAGTCCGCACATTCATCTCGACTGGATGCTGCGGAAACTTTGATGCAC
ACAAAGGTGGAGCAGGCCAAGGAGGGAATCGCAAAAGCGTTGGACAGAGT
GAAAGCTGGCAAAGCAACAGGCGAGCCTGCAGGCGACCTCAGCGACGCCA
CCAGCACCAATGACGAGAATGACAAGCAATCTCGGTTGAGTGCGGCGGGA
GATTTGCTTCACTCAAGGATTGAACAGACTAAGGAGGAGGTAGCAAAAGT
GATGGAGAGGGCAAAAGCACACGAAAAGGGGGAGGTTTCGAAGGATGCAA
GTGATCTGGGTGGTGCCTCCAGCGCAGTCGAAGATGGAGACGCCGGCGTC
AAACAGTCGGCGGCGACATCTCGAAAAGAATCGATACAGCATGTGGTTGA
GACAAAGGTGGAACAGGCAAAACACGGAATGTGGAAGCTTTTTGAAAAGG
CCAAACAGGACAAGCAAGATTTTTTATCAAAAGATGACGGAGGCGGTGAT
AGCGCAAAACCGAGCTCCACGACTTTAGTGCGCAGAAAAACGGATGGTGA
CAAGGCAGACGATAAGGTTAGCGACACCGGGGACGGAGGGGTACAGTGA
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