Gvermi7107.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7107.t1
Unique Name	Gvermi7107.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2327	contig	ScGOVlb_2327:744..1504 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	414684.RC1_0534
PFAMs	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Max annot lvl	204441\|Rhodospirillales
Evalue	7.68e-62
EggNOG OGs	COG1960@1\|root,COG1960@2\|Bacteria,1MUBH@1224\|Proteobacteria,2TSKH@28211\|Alphaproteobacteria,2JR6R@204441\|Rhodospirillales
Description	Acyl-CoA dehydrogenase, middle domain
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7107	Gvermi7107	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2327 744..1504 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7107.t1.start1	Gvermi7107.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2327 744..746 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7107.t1.CDS1	Gvermi7107.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2327 744..1504 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7107.t1.exon1	Gvermi7107.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2327 744..1504 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7107.t1	Gvermi7107.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2327 744..1504 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2327:744..1504+
coding sequence from alignment at ScGOVlb_2327:744..1504+

mRNA sequence

>Gvermi7107.t1 ID=Gvermi7107.t1|Name=Gvermi7107.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=254bp
MDFSYSSEQELLRDSANKFALKGYGFDRYKETLTRPGQLNAEAWAQMAEF
GWLALPLPESAGGLGGSGTDIALITEALGAGMVLEPFVSGVVLPGKLLAL
AGSEAQQQRLLPPLAEGGLQLAVAWAEPSDRQNPAHCATEAKADGQGYVI
SGRKLCALNAPNAQTLIVSARSAGSAGEAAGISLFEIDPAASGVTLTPYA
VMGGGTAADVVLDQVRVSADALIGPAGEGFAALEAALDHATAAVCAQALG
AMNA

spliced messenger RNA

>Gvermi7107.t1 ID=Gvermi7107.t1|Name=Gvermi7107.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=761bp|location=Sequence derived from alignment at ScGOVlb_2327:744..1504+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTTTCATACTCGTCTGAGCAGGAACTGCTGCGGGACAGCGCCAA
CAAATTCGCCCTCAAGGGCTATGGCTTCGACCGCTACAAAGAAACGCTGA
CGCGCCCCGGTCAACTCAATGCCGAGGCCTGGGCGCAGATGGCCGAGTTC
GGCTGGCTGGCCCTGCCACTGCCGGAATCGGCGGGCGGCCTCGGCGGCAG
CGGCACCGACATTGCGCTGATCACTGAAGCGCTTGGTGCCGGCATGGTCC
TGGAGCCCTTCGTCTCCGGCGTGGTGTTGCCGGGCAAGCTGCTGGCGCTG
GCCGGCAGCGAAGCGCAGCAGCAGCGTCTGTTGCCACCGCTCGCCGAAGG
CGGGCTGCAGCTTGCAGTGGCCTGGGCCGAACCCAGTGACCGCCAGAACC
CGGCCCACTGTGCAACCGAGGCCAAAGCCGATGGCCAGGGCTACGTCATC
AGTGGCCGCAAGCTGTGTGCGCTCAATGCGCCAAACGCACAGACGCTGAT
CGTCAGCGCCCGCAGCGCGGGATCGGCTGGCGAGGCCGCCGGCATCAGCC
TGTTCGAGATCGACCCGGCCGCCAGCGGCGTCACGCTCACGCCCTACGCG
GTCATGGGGGGCGGCACGGCGGCGGACGTGGTGCTTGATCAGGTCCGGGT
TTCGGCCGACGCTTTGATCGGGCCGGCAGGCGAAGGCTTCGCGGCGCTGG
AGGCGGCGCTTGATCACGCCACCGCAGCCGTCTGCGCGCAGGCCCTAGGC
GCCATGAACGC

protein sequence of Gvermi7107.t1

>Gvermi7107.t1 ID=Gvermi7107.t1|Name=Gvermi7107.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=254bp
MDFSYSSEQELLRDSANKFALKGYGFDRYKETLTRPGQLNAEAWAQMAEF
GWLALPLPESAGGLGGSGTDIALITEALGAGMVLEPFVSGVVLPGKLLAL
AGSEAQQQRLLPPLAEGGLQLAVAWAEPSDRQNPAHCATEAKADGQGYVI
SGRKLCALNAPNAQTLIVSARSAGSAGEAAGISLFEIDPAASGVTLTPYA
VMGGGTAADVVLDQVRVSADALIGPAGEGFAALEAALDHATAAVCAQALG
AMNA

mRNA from alignment at ScGOVlb_2327:744..1504+

Legend: start_codonpolypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7107.t1 ID=Gvermi7107.t1|Name=Gvermi7107.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=761bp|location=Sequence derived from alignment at ScGOVlb_2327:744..1504+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTTTTCATACTCGTCTGAGCAGGAACTGCTGCGGGACAGCGCCAA
CAAATTCGCCCTCAAGGGCTATGGCTTCGACCGCTACAAAGAAACGCTGA
CGCGCCCCGGTCAACTCAATGCCGAGGCCTGGGCGCAGATGGCCGAGTTC
GGCTGGCTGGCCCTGCCACTGCCGGAATCGGCGGGCGGCCTCGGCGGCAG
CGGCACCGACATTGCGCTGATCACTGAAGCGCTTGGTGCCGGCATGGTCC
TGGAGCCCTTCGTCTCCGGCGTGGTGTTGCCGGGCAAGCTGCTGGCGCTG
GCCGGCAGCGAAGCGCAGCAGCAGCGTCTGTTGCCACCGCTCGCCGAAGG
CGGGCTGCAGCTTGCAGTGGCCTGGGCCGAACCCAGTGACCGCCAGAACC
CGGCCCACTGTGCAACCGAGGCCAAAGCCGATGGCCAGGGCTACGTCATC
AGTGGCCGCAAGCTGTGTGCGCTCAATGCGCCAAACGCACAGACGCTGAT
CGTCAGCGCCCGCAGCGCGGGATCGGCTGGCGAGGCCGCCGGCATCAGCC
TGTTCGAGATCGACCCGGCCGCCAGCGGCGTCACGCTCACGCCCTACGCG
GTCATGGGGGGCGGCACGGCGGCGGACGTGGTGCTTGATCAGGTCCGGGT
TTCGGCCGACGCTTTGATCGGGCCGGCAGGCGAAGGCTTCGCGGCGCTGG
AGGCGGCGCTTGATCACGCCACCGCAGCCGTCTGCGCGCAGGCCCTAGGC
GCCATGAACGC

Coding sequence (CDS) from alignment at ScGOVlb_2327:744..1504+

>Gvermi7107.t1 ID=Gvermi7107.t1|Name=Gvermi7107.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=761bp|location=Sequence derived from alignment at ScGOVlb_2327:744..1504+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACTTTTCATACTCGTCTGAGCAGGAACTGCTGCGGGACAGCGCCAA
CAAATTCGCCCTCAAGGGCTATGGCTTCGACCGCTACAAAGAAACGCTGA
CGCGCCCCGGTCAACTCAATGCCGAGGCCTGGGCGCAGATGGCCGAGTTC
GGCTGGCTGGCCCTGCCACTGCCGGAATCGGCGGGCGGCCTCGGCGGCAG
CGGCACCGACATTGCGCTGATCACTGAAGCGCTTGGTGCCGGCATGGTCC
TGGAGCCCTTCGTCTCCGGCGTGGTGTTGCCGGGCAAGCTGCTGGCGCTG
GCCGGCAGCGAAGCGCAGCAGCAGCGTCTGTTGCCACCGCTCGCCGAAGG
CGGGCTGCAGCTTGCAGTGGCCTGGGCCGAACCCAGTGACCGCCAGAACC
CGGCCCACTGTGCAACCGAGGCCAAAGCCGATGGCCAGGGCTACGTCATC
AGTGGCCGCAAGCTGTGTGCGCTCAATGCGCCAAACGCACAGACGCTGAT
CGTCAGCGCCCGCAGCGCGGGATCGGCTGGCGAGGCCGCCGGCATCAGCC
TGTTCGAGATCGACCCGGCCGCCAGCGGCGTCACGCTCACGCCCTACGCG
GTCATGGGGGGCGGCACGGCGGCGGACGTGGTGCTTGATCAGGTCCGGGT
TTCGGCCGACGCTTTGATCGGGCCGGCAGGCGAAGGCTTCGCGGCGCTGG
AGGCGGCGCTTGATCACGCCACCGCAGCCGTCTGCGCGCAGGCCCTAGGC
GCCATGAACGC