Gvermi7106.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi7106.t1
Unique Name	Gvermi7106.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	241

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2327	contig	ScGOVlb_2327:2..722 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1177154.Y5S_02549
PFAMs	Acyl-CoA_dh_1,Acyl-CoA_dh_M,Acyl-CoA_dh_N
Max annot lvl	135619\|Oceanospirillales
Evalue	2.29e-112
EggNOG OGs	COG1960@1\|root,COG1960@2\|Bacteria,1MVJC@1224\|Proteobacteria,1RPW2@1236\|Gammaproteobacteria,1XNQT@135619\|Oceanospirillales
Description	acyl-CoA dehydrogenase
COG category	I

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi7106	Gvermi7106	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2327 2..722 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7106.t1.CDS1	Gvermi7106.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2327 2..722 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7106.t1.exon1	Gvermi7106.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2327 2..722 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7106.t1.stop1	Gvermi7106.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2327 720..722 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi7106.t1	Gvermi7106.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2327 2..722 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2327:2..722+
coding sequence from alignment at ScGOVlb_2327:2..722+

mRNA sequence

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=241bp
XDHYVVNGQKIWTTQAHWASYIFCLCRTNTEVPKQQGISFLLIDMKTPGL
EIRPIMTIDGHHHLNEIFLSDVRVPAENLVGKEGQGWTIAKFLLSHERTA
IAGVSDSLYQMDELRRAVASDASLADDPLVRRRLAALEVDLMALEYTNLR
TLDRVAKGQPPGPESSGLKIKGAEMQQAISEAQVELGGLSALPWMSDDAA
GHDVFRSATQRYNFLRASSIYGGTNEIQKNVLAKLLLGAG*

spliced messenger RNA

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=721bp|location=Sequence derived from alignment at ScGOVlb_2327:2..722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TGACCACTACGTGGTGAATGGCCAGAAAATCTGGACCACCCAGGCGCACT
GGGCAAGCTACATCTTCTGCCTGTGTCGCACCAACACCGAGGTGCCCAAG
CAGCAGGGCATTTCCTTCCTGCTCATCGACATGAAAACGCCGGGGCTCGA
AATCCGCCCGATCATGACCATCGATGGCCATCACCATCTCAACGAGATCT
TCCTGAGCGATGTTCGCGTGCCGGCCGAGAACCTGGTCGGCAAGGAGGGA
CAGGGCTGGACGATCGCCAAGTTCCTGCTCTCCCACGAGCGCACCGCCAT
CGCCGGCGTGTCCGACAGCCTCTACCAGATGGATGAGCTGCGCCGCGCCG
TCGCCAGCGATGCCTCGCTGGCCGATGACCCACTGGTGCGGCGTCGCCTG
GCGGCGCTGGAGGTGGACCTCATGGCCCTTGAATACACCAATCTGCGCAC
CCTGGACCGCGTCGCCAAGGGGCAGCCACCGGGTCCGGAATCGTCCGGTC
TCAAGATCAAGGGCGCCGAGATGCAGCAGGCCATTTCCGAGGCGCAGGTC
GAACTCGGAGGCCTCAGCGCACTGCCATGGATGAGCGACGACGCGGCCGG
CCACGACGTGTTTCGCAGCGCCACACAGCGTTACAACTTCCTGCGCGCCA
GCAGCATCTACGGCGGCACCAACGAAATCCAGAAAAACGTCCTCGCCAAG
CTGCTGCTGGGCGCGGGCTGA

protein sequence of Gvermi7106.t1

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=241bp
XDHYVVNGQKIWTTQAHWASYIFCLCRTNTEVPKQQGISFLLIDMKTPGL
EIRPIMTIDGHHHLNEIFLSDVRVPAENLVGKEGQGWTIAKFLLSHERTA
IAGVSDSLYQMDELRRAVASDASLADDPLVRRRLAALEVDLMALEYTNLR
TLDRVAKGQPPGPESSGLKIKGAEMQQAISEAQVELGGLSALPWMSDDAA
GHDVFRSATQRYNFLRASSIYGGTNEIQKNVLAKLLLGAG*

mRNA from alignment at ScGOVlb_2327:2..722+

Legend: CDSpolypeptideexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=721bp|location=Sequence derived from alignment at ScGOVlb_2327:2..722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGACCACTACGTGGTGAATGGCCAGAAAATCTGGACCACCCAGGCGCACT
GGGCAAGCTACATCTTCTGCCTGTGTCGCACCAACACCGAGGTGCCCAAG
CAGCAGGGCATTTCCTTCCTGCTCATCGACATGAAAACGCCGGGGCTCGA
AATCCGCCCGATCATGACCATCGATGGCCATCACCATCTCAACGAGATCT
TCCTGAGCGATGTTCGCGTGCCGGCCGAGAACCTGGTCGGCAAGGAGGGA
CAGGGCTGGACGATCGCCAAGTTCCTGCTCTCCCACGAGCGCACCGCCAT
CGCCGGCGTGTCCGACAGCCTCTACCAGATGGATGAGCTGCGCCGCGCCG
TCGCCAGCGATGCCTCGCTGGCCGATGACCCACTGGTGCGGCGTCGCCTG
GCGGCGCTGGAGGTGGACCTCATGGCCCTTGAATACACCAATCTGCGCAC
CCTGGACCGCGTCGCCAAGGGGCAGCCACCGGGTCCGGAATCGTCCGGTC
TCAAGATCAAGGGCGCCGAGATGCAGCAGGCCATTTCCGAGGCGCAGGTC
GAACTCGGAGGCCTCAGCGCACTGCCATGGATGAGCGACGACGCGGCCGG
CCACGACGTGTTTCGCAGCGCCACACAGCGTTACAACTTCCTGCGCGCCA
GCAGCATCTACGGCGGCACCAACGAAATCCAGAAAAACGTCCTCGCCAAG
CTGCTGCTGGGCGCGGGCTGA

Coding sequence (CDS) from alignment at ScGOVlb_2327:2..722+

>Gvermi7106.t1 ID=Gvermi7106.t1|Name=Gvermi7106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=721bp|location=Sequence derived from alignment at ScGOVlb_2327:2..722+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TGACCACTACGTGGTGAATGGCCAGAAAATCTGGACCACCCAGGCGCACT
GGGCAAGCTACATCTTCTGCCTGTGTCGCACCAACACCGAGGTGCCCAAG
CAGCAGGGCATTTCCTTCCTGCTCATCGACATGAAAACGCCGGGGCTCGA
AATCCGCCCGATCATGACCATCGATGGCCATCACCATCTCAACGAGATCT
TCCTGAGCGATGTTCGCGTGCCGGCCGAGAACCTGGTCGGCAAGGAGGGA
CAGGGCTGGACGATCGCCAAGTTCCTGCTCTCCCACGAGCGCACCGCCAT
CGCCGGCGTGTCCGACAGCCTCTACCAGATGGATGAGCTGCGCCGCGCCG
TCGCCAGCGATGCCTCGCTGGCCGATGACCCACTGGTGCGGCGTCGCCTG
GCGGCGCTGGAGGTGGACCTCATGGCCCTTGAATACACCAATCTGCGCAC
CCTGGACCGCGTCGCCAAGGGGCAGCCACCGGGTCCGGAATCGTCCGGTC
TCAAGATCAAGGGCGCCGAGATGCAGCAGGCCATTTCCGAGGCGCAGGTC
GAACTCGGAGGCCTCAGCGCACTGCCATGGATGAGCGACGACGCGGCCGG
CCACGACGTGTTTCGCAGCGCCACACAGCGTTACAACTTCCTGCGCGCCA
GCAGCATCTACGGCGGCACCAACGAAATCCAGAAAAACGTCCTCGCCAAG
CTGCTGCTGGGCGCGGGCTGA