Gvermi8854.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi8854.t1
Unique NameGvermi8854.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_2241contigScGOVlb_2241:275776..276305 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi8854Gvermi8854Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_2241 275776..276305 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8854.t1Gvermi8854.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_2241 275776..276305 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8854.t1.start1Gvermi8854.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_2241 275776..275778 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8854.t1.CDS1Gvermi8854.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 275776..275900 +
Gvermi8854.t1.CDS2Gvermi8854.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_2241 275999..276305 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8854.t1.exon1Gvermi8854.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 275776..275900 +
Gvermi8854.t1.exon2Gvermi8854.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_2241 275999..276305 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8854.t1.intron1Gvermi8854.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_2241 275901..275998 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi8854.t1.stop1Gvermi8854.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_2241 276303..276305 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi8854.t1 ID=Gvermi8854.t1|Name=Gvermi8854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=144bp
MHQLRLRFADESRARQESARAQRSVRHSRADDGEHERNARKRERSMQRLQ
EHRERLRRVQQLKQERAAFKRGVWERKQQQLADRRESVVQLLVNEAPKWI
TEDTLDKHVEQAVDEFFIEGVADARRDEEALRVSGEVGGPVAA*
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spliced messenger RNA

>Gvermi8854.t1 ID=Gvermi8854.t1|Name=Gvermi8854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=432bp|location=Sequence derived from alignment at ScGOVlb_2241:275776..276305+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCAGCTGAGGCTGCGCTTTGCCGACGAATCGCGCGCGCGACAAGA
GAGCGCGCGAGCGCAGCGCAGCGTGCGGCACAGCCGCGCCGACGACGGCG
AGCACGAGCGCAACGCTCGCAAACGCGAACGGTCGATGCAGCGGCTGCAG
GAGCACAGGGAGCGGCTGCGACGCGTGCAGCAGCTGAAGCAGGAGCGCGC
CGCGTTCAAGAGGGGCGTGTGGGAGAGAAAGCAGCAGCAGCTGGCGGACA
GGCGCGAGAGCGTGGTGCAGCTGCTGGTGAATGAGGCGCCCAAGTGGATC
ACGGAGGACACGCTGGACAAACACGTGGAGCAGGCGGTGGACGAGTTCTT
CATCGAGGGGGTTGCGGACGCCAGGCGAGACGAGGAGGCGCTGCGCGTGA
GCGGGGAGGTGGGTGGCCCGGTGGCAGCGTAG
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protein sequence of Gvermi8854.t1

>Gvermi8854.t1 ID=Gvermi8854.t1|Name=Gvermi8854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=144bp
MHQLRLRFADESRARQESARAQRSVRHSRADDGEHERNARKRERSMQRLQ
EHRERLRRVQQLKQERAAFKRGVWERKQQQLADRRESVVQLLVNEAPKWI
TEDTLDKHVEQAVDEFFIEGVADARRDEEALRVSGEVGGPVAA*
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mRNA from alignment at ScGOVlb_2241:275776..276305+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi8854.t1 ID=Gvermi8854.t1|Name=Gvermi8854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=530bp|location=Sequence derived from alignment at ScGOVlb_2241:275776..276305+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCAGCTGAGGCTGCGCTTTGCCGACGAATCGCGCGCGCGACAAGA
GAGCGCGCGAGCGCAGCGCAGCGTGCGGCACAGCCGCGCCGACGACGGCG
AGCACGAGCGCAACGCTCGCAAACGGTAAGGCGCTGCATCCCGCTGCGCG
AGGCGCGCGCGCGCGCGGCGGGCGCGGCGCTTGCTAACTGGCCACCGTGC
ACGCGACGGCGGCGCGCGCGCAGCGAACGGTCGATGCAGCGGCTGCAGGA
GCACAGGGAGCGGCTGCGACGCGTGCAGCAGCTGAAGCAGGAGCGCGCCG
CGTTCAAGAGGGGCGTGTGGGAGAGAAAGCAGCAGCAGCTGGCGGACAGG
CGCGAGAGCGTGGTGCAGCTGCTGGTGAATGAGGCGCCCAAGTGGATCAC
GGAGGACACGCTGGACAAACACGTGGAGCAGGCGGTGGACGAGTTCTTCA
TCGAGGGGGTTGCGGACGCCAGGCGAGACGAGGAGGCGCTGCGCGTGAGC
GGGGAGGTGGGTGGCCCGGTGGCAGCGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_2241:275776..276305+

>Gvermi8854.t1 ID=Gvermi8854.t1|Name=Gvermi8854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=432bp|location=Sequence derived from alignment at ScGOVlb_2241:275776..276305+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCACCAGCTGAGGCTGCGCTTTGCCGACGAATCGCGCGCGCGACAAGA
GAGCGCGCGAGCGCAGCGCAGCGTGCGGCACAGCCGCGCCGACGACGGCG
AGCACGAGCGCAACGCTCGCAAACGCGAACGGTCGATGCAGCGGCTGCAG
GAGCACAGGGAGCGGCTGCGACGCGTGCAGCAGCTGAAGCAGGAGCGCGC
CGCGTTCAAGAGGGGCGTGTGGGAGAGAAAGCAGCAGCAGCTGGCGGACA
GGCGCGAGAGCGTGGTGCAGCTGCTGGTGAATGAGGCGCCCAAGTGGATC
ACGGAGGACACGCTGGACAAACACGTGGAGCAGGCGGTGGACGAGTTCTT
CATCGAGGGGGTTGCGGACGCCAGGCGAGACGAGGAGGCGCTGCGCGTGA
GCGGGGAGGTGGGTGGCCCGGTGGCAGCGTAG
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