Gvermi8842.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi8842.t1
Unique Name	Gvermi8842.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_2241	contig	ScGOVlb_2241:246578..248050 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	41431.PCC8801_3076
Preferred name	cpcC2
PFAMs	CpcD,PBS_linker_poly
Max annot lvl	1117\|Cyanobacteria
KEGG ko	ko:K02286
KEGG Pathway	ko00196,ko01100,map00196,map01100
Evalue	1.03e-31
EggNOG OGs	COG0237@1\|root,COG0237@2\|Bacteria,1G1CU@1117\|Cyanobacteria,3KHDH@43988\|Cyanothece
Description	Belongs to the phycobilisome linker protein family
COG category	H
BRITE	ko00000,ko00001,ko00194

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi8842	Gvermi8842	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_2241 246578..248050 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8842.t1.start1	Gvermi8842.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_2241 246578..246580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8842.t1.CDS1	Gvermi8842.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_2241 246578..248050 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8842.t1.exon1	Gvermi8842.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_2241 246578..248050 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8842.t1.stop1	Gvermi8842.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_2241 248048..248050 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi8842.t1	Gvermi8842.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_2241 246578..248050 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_2241:246578..248050+
coding sequence from alignment at ScGOVlb_2241:246578..248050+

mRNA sequence

>Gvermi8842.t1 ID=Gvermi8842.t1|Name=Gvermi8842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=491bp
MSAFVPGLPLSSTRVFITGSNVQIDGRPFRQTENLACPQISAIKLPSLPK
LPSLPSLPGFRKKAAKPASAPPKPKPVEKLKVGGVQVDRNVNPAPKRTTP
VTKRDFPKKETSTLPKFYNPSTARYEFVADAKGQNATPFDIRVGRETNTT
NRRVNEQGTFRNMDPYTDDLVWARPGWSSEEARVAVRAAIRQVFGNANLF
ESELAELAFPISCVTDTADMKEFVRALGLSEAYRKRFFESCSNTRFVELN
FMHFLGRAPHNQAEVSQHIQIITQQGFNAEINSYIDSDEYDTLWGESRIP
AVNFRGGHPYNNDMNKIAVLNGGYATTDRASTRAYLNRGDATGFNPYSIR
KGLPEAWRGENDARASAGPLNSFSDKAFWNQQPNPLQEAELQWTSRYGKW
NKFYYKDSIVYKEVMRPKLTHSDAELEEAAAILKYGSTVAKNYIGSRKIF
DMAPIIELRPPTSQVAPNGLLSVTMKKISFPIPSDLKQPV*

spliced messenger RNA

>Gvermi8842.t1 ID=Gvermi8842.t1|Name=Gvermi8842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_2241:246578..248050+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCTTTCGTGCCAGGCCTACCGCTCTCGTCCACCCGTGTGTTCAT
CACTGGCTCAAACGTTCAAATCGACGGTCGCCCTTTCCGTCAAACTGAAA
ACCTTGCATGTCCTCAAATATCAGCTATTAAGCTCCCTTCGTTGCCTAAG
TTGCCTTCGTTGCCTTCATTGCCCGGGTTTCGCAAGAAAGCCGCAAAGCC
GGCTTCAGCACCCCCCAAACCAAAGCCCGTTGAGAAACTGAAGGTCGGCG
GCGTACAAGTTGATCGAAATGTGAACCCCGCACCGAAGAGGACTACTCCA
GTTACGAAGAGGGATTTTCCGAAGAAGGAAACGAGCACGCTCCCCAAGTT
CTACAACCCTTCCACAGCGCGCTATGAATTCGTGGCAGATGCGAAGGGTC
AGAATGCCACGCCGTTTGACATTCGCGTGGGTCGCGAAACAAACACAACC
AACCGCCGTGTCAATGAGCAAGGCACTTTTAGAAATATGGATCCATACAC
GGATGATCTTGTGTGGGCTAGGCCTGGCTGGTCCTCCGAGGAAGCCAGGG
TTGCTGTACGTGCTGCTATCCGACAAGTTTTCGGAAATGCCAATCTCTTT
GAAAGCGAACTGGCCGAGCTGGCCTTCCCGATCAGTTGCGTTACAGACAC
GGCTGACATGAAGGAGTTCGTGAGAGCTCTCGGATTATCAGAAGCATACC
GCAAACGCTTTTTTGAAAGTTGCAGCAACACTCGGTTTGTGGAGCTGAAC
TTCATGCACTTTCTAGGTCGCGCCCCACACAATCAAGCCGAAGTTAGCCA
ACATATTCAGATTATTACTCAACAAGGATTCAATGCCGAAATCAACTCAT
ACATTGATTCCGATGAGTATGATACACTCTGGGGCGAAAGTCGTATCCCG
GCTGTCAACTTCAGGGGCGGCCACCCTTACAATAACGATATGAACAAAAT
TGCTGTTCTGAACGGAGGATATGCCACAACCGATCGTGCATCAACTCGAG
CCTATCTGAACAGAGGCGATGCAACCGGTTTCAATCCATACTCCATTCGG
AAGGGTTTGCCCGAGGCATGGCGAGGAGAAAACGATGCTCGCGCCTCGGC
TGGACCACTGAATTCTTTCAGCGACAAGGCATTTTGGAATCAGCAGCCGA
ACCCCTTGCAGGAAGCAGAACTTCAATGGACATCTCGCTACGGGAAGTGG
AACAAGTTCTATTACAAAGACTCCATCGTTTATAAAGAAGTCATGCGACC
TAAGCTCACACATTCCGATGCGGAACTTGAAGAAGCAGCAGCAATTCTCA
AGTACGGATCCACTGTCGCAAAGAACTACATTGGGAGCCGAAAGATTTTT
GATATGGCCCCCATCATCGAGCTACGCCCGCCAACTTCCCAGGTTGCCCC
AAATGGCCTTCTGTCTGTGACCATGAAGAAGATATCGTTCCCGATCCCAT
CCGATTTGAAGCAGCCAGTGTGA

protein sequence of Gvermi8842.t1

>Gvermi8842.t1 ID=Gvermi8842.t1|Name=Gvermi8842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=491bp
MSAFVPGLPLSSTRVFITGSNVQIDGRPFRQTENLACPQISAIKLPSLPK
LPSLPSLPGFRKKAAKPASAPPKPKPVEKLKVGGVQVDRNVNPAPKRTTP
VTKRDFPKKETSTLPKFYNPSTARYEFVADAKGQNATPFDIRVGRETNTT
NRRVNEQGTFRNMDPYTDDLVWARPGWSSEEARVAVRAAIRQVFGNANLF
ESELAELAFPISCVTDTADMKEFVRALGLSEAYRKRFFESCSNTRFVELN
FMHFLGRAPHNQAEVSQHIQIITQQGFNAEINSYIDSDEYDTLWGESRIP
AVNFRGGHPYNNDMNKIAVLNGGYATTDRASTRAYLNRGDATGFNPYSIR
KGLPEAWRGENDARASAGPLNSFSDKAFWNQQPNPLQEAELQWTSRYGKW
NKFYYKDSIVYKEVMRPKLTHSDAELEEAAAILKYGSTVAKNYIGSRKIF
DMAPIIELRPPTSQVAPNGLLSVTMKKISFPIPSDLKQPV*

mRNA from alignment at ScGOVlb_2241:246578..248050+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi8842.t1 ID=Gvermi8842.t1|Name=Gvermi8842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1473bp|location=Sequence derived from alignment at ScGOVlb_2241:246578..248050+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCTTTCGTGCCAGGCCTACCGCTCTCGTCCACCCGTGTGTTCAT
CACTGGCTCAAACGTTCAAATCGACGGTCGCCCTTTCCGTCAAACTGAAA
ACCTTGCATGTCCTCAAATATCAGCTATTAAGCTCCCTTCGTTGCCTAAG
TTGCCTTCGTTGCCTTCATTGCCCGGGTTTCGCAAGAAAGCCGCAAAGCC
GGCTTCAGCACCCCCCAAACCAAAGCCCGTTGAGAAACTGAAGGTCGGCG
GCGTACAAGTTGATCGAAATGTGAACCCCGCACCGAAGAGGACTACTCCA
GTTACGAAGAGGGATTTTCCGAAGAAGGAAACGAGCACGCTCCCCAAGTT
CTACAACCCTTCCACAGCGCGCTATGAATTCGTGGCAGATGCGAAGGGTC
AGAATGCCACGCCGTTTGACATTCGCGTGGGTCGCGAAACAAACACAACC
AACCGCCGTGTCAATGAGCAAGGCACTTTTAGAAATATGGATCCATACAC
GGATGATCTTGTGTGGGCTAGGCCTGGCTGGTCCTCCGAGGAAGCCAGGG
TTGCTGTACGTGCTGCTATCCGACAAGTTTTCGGAAATGCCAATCTCTTT
GAAAGCGAACTGGCCGAGCTGGCCTTCCCGATCAGTTGCGTTACAGACAC
GGCTGACATGAAGGAGTTCGTGAGAGCTCTCGGATTATCAGAAGCATACC
GCAAACGCTTTTTTGAAAGTTGCAGCAACACTCGGTTTGTGGAGCTGAAC
TTCATGCACTTTCTAGGTCGCGCCCCACACAATCAAGCCGAAGTTAGCCA
ACATATTCAGATTATTACTCAACAAGGATTCAATGCCGAAATCAACTCAT
ACATTGATTCCGATGAGTATGATACACTCTGGGGCGAAAGTCGTATCCCG
GCTGTCAACTTCAGGGGCGGCCACCCTTACAATAACGATATGAACAAAAT
TGCTGTTCTGAACGGAGGATATGCCACAACCGATCGTGCATCAACTCGAG
CCTATCTGAACAGAGGCGATGCAACCGGTTTCAATCCATACTCCATTCGG
AAGGGTTTGCCCGAGGCATGGCGAGGAGAAAACGATGCTCGCGCCTCGGC
TGGACCACTGAATTCTTTCAGCGACAAGGCATTTTGGAATCAGCAGCCGA
ACCCCTTGCAGGAAGCAGAACTTCAATGGACATCTCGCTACGGGAAGTGG
AACAAGTTCTATTACAAAGACTCCATCGTTTATAAAGAAGTCATGCGACC
TAAGCTCACACATTCCGATGCGGAACTTGAAGAAGCAGCAGCAATTCTCA
AGTACGGATCCACTGTCGCAAAGAACTACATTGGGAGCCGAAAGATTTTT
GATATGGCCCCCATCATCGAGCTACGCCCGCCAACTTCCCAGGTTGCCCC
AAATGGCCTTCTGTCTGTGACCATGAAGAAGATATCGTTCCCGATCCCAT
CCGATTTGAAGCAGCCAGTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_2241:246578..248050+

>Gvermi8842.t1 ID=Gvermi8842.t1|Name=Gvermi8842.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1473bp|location=Sequence derived from alignment at ScGOVlb_2241:246578..248050+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAGCGCTTTCGTGCCAGGCCTACCGCTCTCGTCCACCCGTGTGTTCAT
CACTGGCTCAAACGTTCAAATCGACGGTCGCCCTTTCCGTCAAACTGAAA
ACCTTGCATGTCCTCAAATATCAGCTATTAAGCTCCCTTCGTTGCCTAAG
TTGCCTTCGTTGCCTTCATTGCCCGGGTTTCGCAAGAAAGCCGCAAAGCC
GGCTTCAGCACCCCCCAAACCAAAGCCCGTTGAGAAACTGAAGGTCGGCG
GCGTACAAGTTGATCGAAATGTGAACCCCGCACCGAAGAGGACTACTCCA
GTTACGAAGAGGGATTTTCCGAAGAAGGAAACGAGCACGCTCCCCAAGTT
CTACAACCCTTCCACAGCGCGCTATGAATTCGTGGCAGATGCGAAGGGTC
AGAATGCCACGCCGTTTGACATTCGCGTGGGTCGCGAAACAAACACAACC
AACCGCCGTGTCAATGAGCAAGGCACTTTTAGAAATATGGATCCATACAC
GGATGATCTTGTGTGGGCTAGGCCTGGCTGGTCCTCCGAGGAAGCCAGGG
TTGCTGTACGTGCTGCTATCCGACAAGTTTTCGGAAATGCCAATCTCTTT
GAAAGCGAACTGGCCGAGCTGGCCTTCCCGATCAGTTGCGTTACAGACAC
GGCTGACATGAAGGAGTTCGTGAGAGCTCTCGGATTATCAGAAGCATACC
GCAAACGCTTTTTTGAAAGTTGCAGCAACACTCGGTTTGTGGAGCTGAAC
TTCATGCACTTTCTAGGTCGCGCCCCACACAATCAAGCCGAAGTTAGCCA
ACATATTCAGATTATTACTCAACAAGGATTCAATGCCGAAATCAACTCAT
ACATTGATTCCGATGAGTATGATACACTCTGGGGCGAAAGTCGTATCCCG
GCTGTCAACTTCAGGGGCGGCCACCCTTACAATAACGATATGAACAAAAT
TGCTGTTCTGAACGGAGGATATGCCACAACCGATCGTGCATCAACTCGAG
CCTATCTGAACAGAGGCGATGCAACCGGTTTCAATCCATACTCCATTCGG
AAGGGTTTGCCCGAGGCATGGCGAGGAGAAAACGATGCTCGCGCCTCGGC
TGGACCACTGAATTCTTTCAGCGACAAGGCATTTTGGAATCAGCAGCCGA
ACCCCTTGCAGGAAGCAGAACTTCAATGGACATCTCGCTACGGGAAGTGG
AACAAGTTCTATTACAAAGACTCCATCGTTTATAAAGAAGTCATGCGACC
TAAGCTCACACATTCCGATGCGGAACTTGAAGAAGCAGCAGCAATTCTCA
AGTACGGATCCACTGTCGCAAAGAACTACATTGGGAGCCGAAAGATTTTT
GATATGGCCCCCATCATCGAGCTACGCCCGCCAACTTCCCAGGTTGCCCC
AAATGGCCTTCTGTCTGTGACCATGAAGAAGATATCGTTCCCGATCCCAT
CCGATTTGAAGCAGCCAGTGTGA