Gvermi2063.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2063.t1
Unique NameGvermi2063.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:17702..20307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0QYG5
Max annot lvl2759|Eukaryota
Evalue7.79e-10
EggNOG OGs2EBK2@1|root,2SHNC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2063Gvermi2063Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 17702..20307 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2063.t1Gvermi2063.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 17702..20307 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2063.t1.stop1Gvermi2063.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 17702..17704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2063.t1.CDS1Gvermi2063.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 17702..18238 -
Gvermi2063.t1.CDS2Gvermi2063.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 19746..19812 -
Gvermi2063.t1.CDS3Gvermi2063.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 20021..20307 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2063.t1.exon1Gvermi2063.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 17702..18238 -
Gvermi2063.t1.exon2Gvermi2063.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 19746..19812 -
Gvermi2063.t1.exon3Gvermi2063.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 20021..20307 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2063.t1.intron1Gvermi2063.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 18239..19745 -
Gvermi2063.t1.intron2Gvermi2063.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 19813..20020 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2063.t1.start1Gvermi2063.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 20305..20307 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2063.t1 ID=Gvermi2063.t1|Name=Gvermi2063.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=297bp
MRPSGILVDIVGVEAGDRGRSCEDHDVCGSILKHDVLVRIHAVQINASGT
EETALAVYWVTDGIDRCRVGFLPRHLIKHKAQYDGKLAQIVEKLSDFFDS
FVQFVEFVLHWNDTLVGEQRLIFPLNKITDRLAPPPPDVEADHGSALLPG
NGQQPPHPAQVNETGVGDHTAAAAAEEPLVFTFTPDVGADLDGYVPTESD
ERLATVYGDHLHDNDGCHLDGGIQDDQKWQRRWKKVAQLRATLYMVPSGK
VGRQFVANLAREFKGVRDRTWNSERPLMYAALILQSTPGVRKSCDI*
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spliced messenger RNA

>Gvermi2063.t1 ID=Gvermi2063.t1|Name=Gvermi2063.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=891bp|location=Sequence derived from alignment at ScGOVlb_191:17702..20307- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTCCAAGCGGAATTTTGGTGGATATCGTAGGTGTTGAAGCGGGCGA
CCGCGGTAGATCGTGTGAGGATCACGATGTTTGTGGCTCCATTTTGAAAC
ATGATGTTTTGGTACGAATCCATGCCGTGCAGATCAACGCAAGTGGAACA
GAAGAAACGGCTTTGGCTGTTTATTGGGTGACGGACGGTATAGATCGCTG
CCGTGTTGGATTCCTACCCCGTCACCTGATCAAACACAAGGCTCAATATG
ACGGTAAACTTGCCCAAATTGTTGAGAAGCTGTCCGATTTCTTCGATAGT
TTTGTCCAATTCGTCGAATTCGTCCTCCACTGGAACGACACTCTCGTTGG
GGAACAACGTCTTATATTCCCGCTCAACAAAATCACAGATCGACTTGCTC
CGCCCCCGCCCGATGTGGAGGCCGATCATGGAAGTGCTTTGCTGCCTGGC
AATGGCCAACAGCCGCCCCATCCTGCGCAGGTCAACGAGACAGGAGTTGG
GGATCACACTGCTGCTGCCGCTGCTGAAGAGCCGCTCGTGTTCACATTCA
CGCCGGATGTGGGCGCCGACCTGGACGGCTACGTGCCGACAGAGTCAGAC
GAGCGCCTTGCCACCGTTTACGGCGACCATCTGCATGACAATGATGGTTG
CCACTTGGACGGAGGCATCCAGGACGACCAGAAATGGCAACGTCGCTGGA
AAAAGGTTGCGCAACTGCGAGCCACCCTGTACATGGTGCCGAGCGGCAAA
GTGGGGAGGCAGTTTGTTGCGAACCTTGCACGAGAGTTCAAGGGTGTAAG
AGATCGCACCTGGAACTCCGAGCGACCGCTGATGTATGCTGCTCTGATTT
TGCAGAGCACGCCGGGAGTTCGAAAATCGTGCGACATCTGA
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protein sequence of Gvermi2063.t1

>Gvermi2063.t1 ID=Gvermi2063.t1|Name=Gvermi2063.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MRPSGILVDIVGVEAGDRGRSCEDHDVCGSILKHDVLVRIHAVQINASGT
EETALAVYWVTDGIDRCRVGFLPRHLIKHKAQYDGKLAQIVEKLSDFFDS
FVQFVEFVLHWNDTLVGEQRLIFPLNKITDRLAPPPPDVEADHGSALLPG
NGQQPPHPAQVNETGVGDHTAAAAAEEPLVFTFTPDVGADLDGYVPTESD
ERLATVYGDHLHDNDGCHLDGGIQDDQKWQRRWKKVAQLRATLYMVPSGK
VGRQFVANLAREFKGVRDRTWNSERPLMYAALILQSTPGVRKSCDI*
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mRNA from alignment at ScGOVlb_191:17702..20307-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2063.t1 ID=Gvermi2063.t1|Name=Gvermi2063.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2606bp|location=Sequence derived from alignment at ScGOVlb_191:17702..20307- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCCAAGCGGAATTTTGGTGGATATCGTAGGTGTTGAAGCGGGCGA
CCGCGGTAGATCGTGTGAGGATCACGATGTTTGTGGCTCCATTTTGAAAC
ATGATGTTTTGGTACGAATCCATGCCGTGCAGATCAACGCAAGTGGAACA
GAAGAAACGGCTTTGGCTGTTTATTGGGTGACGGACGGTATAGATCGCTG
CCGTGTTGGATTCCTACCCCGTCACCTGATCAAACACAAGGCTCAATATG
ACGGTAAACTTGCCCAAATTGTTGAGAAGCTGTCCGAGTCAAACAGCCCG
TCTGATCGCCAAAAGAGCCACCGTAATCGTGGTGTTTGCCAAGCTGTTAT
TGTCGAGGCGGAAGGCGGAGCCGGAAACGAATAACAAACGCCGTTAGCTT
GAAAATAAAGCCAATAAAGAGAGAGACAACAATAGGTAGATTTTAGATGA
TGATTATTTAAACTGCTTCTAATTCTACATTGTCTTGTTCGTTAGTTTCT
TCGATAGTTTTGTCCAATTCGTCGAATTCGTCCTCCACTGGAACGACACT
CTCGTTGGGGAAGTAAGAGTAGTCCTGTTTGCACCAAGCGTTCTTGATAA
TACCCTCTTCCAAGCCGTGCAATACGTCAATACACCAAGAAGCCATCAAT
GGACGACTTGGAGGGGTCGTCTTGTCCATCTCAACGCCTTGTTCAAGCAT
GTATTCCTCCCATTTACGGCGGATACGGTTCTTGTACGGCTTGTTAATAC
CAACGTCGACGGGTTGCGCAAGCCCGGTACATCCGCCAGGGATGTGTTCC
ACCTGCACACCAAGATCCTGAATTGCGGTAACAACACTTTCCATAAGGTG
GCACTTGTATTTGTCCAACAACAACAATGGAACGATCGTCGGTTGAGCCG
TTTCGATGTACGGTTTGAGGACACGATCAATCCAAACCATCATGATACTC
TCGTCCATCCAGGCTCTTTCCTGCACCGTGTACACAGCGCCATCAGGATA
CATTCCAGTGGTGAATTCGCGACTGATACGGCCGTTGGGTTTACCTTTGA
AACAGATCAAGGGCGGCAGATAACGTCCGCTTGCTGTTACGGTCATCGCC
ACCGTAACGCGCATCGTCGAGCCGGACGAAGATCGTACGTTGATAGTACG
GCTGCCGACATCAGCCAAGGTCGTGTTGCTGGTCATGGAAAAATAGACAG
GCGTCTGATCCATGTTGATAATGAAGTTCTTGTCTCGGTTTGGAGCAGAG
ATGATCGGACGCATCTTCAACACAAACGCTTTTGCTTCTTCTTGCGCTTC
TGCAGGAGCACGCTGGGCCTCGTGAGTCTTGATCCTAATAGAAAGACCGG
CGGTACGCACGACACGACGGATCACACCGTACTTGGCGGGATGGTTCTTG
CGTCTAAACTCGGCATCCAACTGTGACGCCTTGAGAATGACCATGTTCAT
AGAGACGCCCATGCCTTGGCCACGCAGGTCGCGGATCCATTCGATAAGAG
GGGTAACAGCGGCAAAAGTGCTCATGCGTCCAGGATGCAAAGTAAAGTTA
GATTGCTTTTTGAGGGTCTGTTTTTTAAAAGTATCCAGGTTCTTGATCCA
ACGACGGACTTGGCTGGGTTGATACTTTTTTCCCGACAAAAAGCCTTAAA
GGACTTCTTCTTTTGCTTGGTTTTCAAGCCAGCTTCTGCGAGCATGATCT
TGGTGCGTAAGGGAATGAATTCCCTTTTCTTCATGGAGGCTTCAGGGAGC
GGTGGGTCCGCCATTGCGAGCGGTGGGTCCGTCATTTGTGTGTTATGTTG
AATGGAAAGCATTTGTTTTTCGAAAAAAGCAGGTGCAAAAGTAGCGTAAA
AATGTAGATAACCGGCCTTATTTTTTATGGTGTCCTGTACCCCTGCCTCA
TTTTTTTGTACATTGGGGGGGGGGTACAGGAAACCAAAAAATACGGTAGT
GGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATTCGTCGTTCGCCAGCAACGTCTTATATTCCCGCTCAACAAAATCA
CAGATCGACTTGCTCCGCCCCCGCCCGATGTGGAGGCCGATCATGGAAGT
GCTTTGCTGCCTGGCAATGGCCAACAGCCGCCCCATCCTGCGCAGGTCAA
CGAGACAGGAGTTGGGGATCACACTGCTGCTGCCGCTGCTGAAGAGCCGC
TCGTGTTCACATTCACGCCGGATGTGGGCGCCGACCTGGACGGCTACGTG
CCGACAGAGTCAGACGAGCGCCTTGCCACCGTTTACGGCGACCATCTGCA
TGACAATGATGGTTGCCACTTGGACGGAGGCATCCAGGACGACCAGAAAT
GGCAACGTCGCTGGAAAAAGGTTGCGCAACTGCGAGCCACCCTGTACATG
GTGCCGAGCGGCAAAGTGGGGAGGCAGTTTGTTGCGAACCTTGCACGAGA
GTTCAAGGGTGTAAGAGATCGCACCTGGAACTCCGAGCGACCGCTGATGT
ATGCTGCTCTGATTTTGCAGAGCACGCCGGGAGTTCGAAAATCGTGCGAC
ATCTGA
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Coding sequence (CDS) from alignment at ScGOVlb_191:17702..20307-

>Gvermi2063.t1 ID=Gvermi2063.t1|Name=Gvermi2063.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=891bp|location=Sequence derived from alignment at ScGOVlb_191:17702..20307- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCGTCCAAGCGGAATTTTGGTGGATATCGTAGGTGTTGAAGCGGGCGA
CCGCGGTAGATCGTGTGAGGATCACGATGTTTGTGGCTCCATTTTGAAAC
ATGATGTTTTGGTACGAATCCATGCCGTGCAGATCAACGCAAGTGGAACA
GAAGAAACGGCTTTGGCTGTTTATTGGGTGACGGACGGTATAGATCGCTG
CCGTGTTGGATTCCTACCCCGTCACCTGATCAAACACAAGGCTCAATATG
ACGGTAAACTTGCCCAAATTGTTGAGAAGCTGTCCGATTTCTTCGATAGT
TTTGTCCAATTCGTCGAATTCGTCCTCCACTGGAACGACACTCTCGTTGG
GGAACAACGTCTTATATTCCCGCTCAACAAAATCACAGATCGACTTGCTC
CGCCCCCGCCCGATGTGGAGGCCGATCATGGAAGTGCTTTGCTGCCTGGC
AATGGCCAACAGCCGCCCCATCCTGCGCAGGTCAACGAGACAGGAGTTGG
GGATCACACTGCTGCTGCCGCTGCTGAAGAGCCGCTCGTGTTCACATTCA
CGCCGGATGTGGGCGCCGACCTGGACGGCTACGTGCCGACAGAGTCAGAC
GAGCGCCTTGCCACCGTTTACGGCGACCATCTGCATGACAATGATGGTTG
CCACTTGGACGGAGGCATCCAGGACGACCAGAAATGGCAACGTCGCTGGA
AAAAGGTTGCGCAACTGCGAGCCACCCTGTACATGGTGCCGAGCGGCAAA
GTGGGGAGGCAGTTTGTTGCGAACCTTGCACGAGAGTTCAAGGGTGTAAG
AGATCGCACCTGGAACTCCGAGCGACCGCTGATGTATGCTGCTCTGATTT
TGCAGAGCACGCCGGGAGTTCGAAAATCGTGCGACATCTGA
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