Gvermi2083.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2083.t1
Unique NameGvermi2083.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length461
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:91138..92871 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0SPE1
Max annot lvl159749.K0SPE1|-
Evalue1.78e-15
EggNOG OGs2D4P1@1|root,2SVS8@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2083Gvermi2083Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 91138..92871 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2083.t1Gvermi2083.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 91138..92871 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2083.t1.stop1Gvermi2083.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 91138..91140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2083.t1.CDS1Gvermi2083.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 91138..91899 -
Gvermi2083.t1.CDS2Gvermi2083.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 92251..92871 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2083.t1.exon1Gvermi2083.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 91138..91899 -
Gvermi2083.t1.exon2Gvermi2083.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 92251..92871 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2083.t1.intron1Gvermi2083.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 91900..92250 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2083.t1.start1Gvermi2083.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 92869..92871 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2083.t1 ID=Gvermi2083.t1|Name=Gvermi2083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=461bp
MDQWGRGIRLKAFGLSRKNQWLGKQEPAKINQREDYVLARALTVCQANVT
FATSPVGKAVERRTPMKFANGIRRNNGSREGWRIEAVDRVIAKLVVFTRD
AQIALVGGGMTLSIRHTKPHIAIGGQWPEVKQQVHLVRGGRHCPTIHVST
LRSVLSEPGFVAANLIVVRFATGTEGLDKKIEAEQCLSFRVQTYAGNNGI
DHFVIRKDLAVSNDENQQSLSFSLPNLVRLYKASVDPLTGAPPLNLYQFC
VQQYNCIPSFYGFNDKARWPLEEGYSKAMLYIFYPHDGDMESLRIDGSYA
KKLEKVMFDDPFPREKLVEIMRQQNNWRLERSDWDDNPGEHSHTPSSDQG
RYNSDFESAAKVADGDAPLDGYEQEADLSEDDFAKLSDGGDSVDWSAKYD
PDGAMWLKNLTKQYYSQPLDNAQPVHLFEEQKYCPENAKGYAQRFLIALQ
LLALITRFES*
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spliced messenger RNA

>Gvermi2083.t1 ID=Gvermi2083.t1|Name=Gvermi2083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1383bp|location=Sequence derived from alignment at ScGOVlb_191:91138..92871- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAATGGGGTCGGGGCATAAGGCTCAAGGCGTTCGGACTCAGTCG
GAAGAACCAATGGCTCGGTAAACAGGAGCCTGCAAAGATAAATCAAAGGG
AAGACTATGTCCTGGCGAGAGCGCTTACAGTGTGCCAGGCGAATGTAACA
TTCGCCACCAGCCCGGTCGGTAAGGCTGTTGAACGCCGTACACCCATGAA
GTTTGCTAATGGCATCAGGAGAAACAATGGTAGCCGGGAGGGTTGGCGTA
TAGAAGCAGTGGACCGTGTTATAGCCAAGCTCGTTGTTTTCACTCGGGAT
GCGCAAATAGCCTTGGTGGGTGGGGGAATGACTCTGTCCATCCGCCACAC
GAAGCCGCACATTGCTATTGGAGGGCAGTGGCCTGAAGTGAAACAGCAGG
TGCACTTGGTCCGTGGTGGACGCCATTGCCCCACCATCCATGTGAGCACG
TTGCGGAGCGTCTTGTCGGAGCCGGGGTTCGTCGCGGCGAATCTTATCGT
AGTACGCTTCGCCACTGGTACCGAGGGACTGGACAAGAAAATCGAGGCCG
AACAGTGCCTGTCCTTTCGGGTGCAGACGTATGCGGGCAATAATGGCATC
GATCACTTCGTCATCAGAAAGGATCTTGCTGTTTCCAATGACGAAAATCA
ACAATCATTATCATTCTCTTTGCCAAACCTGGTGAGACTGTACAAAGCAT
CAGTCGATCCACTAACTGGAGCACCTCCGCTGAACTTGTACCAGTTTTGT
GTACAACAATACAATTGTATTCCAAGCTTCTATGGTTTTAACGACAAAGC
GAGATGGCCCCTGGAGGAAGGCTACTCCAAGGCAATGCTTTATATCTTTT
ACCCCCACGATGGTGACATGGAATCGCTTCGCATCGATGGGTCCTACGCA
AAGAAGCTTGAAAAGGTCATGTTTGATGATCCTTTTCCAAGAGAAAAATT
GGTTGAGATTATGCGACAACAAAACAACTGGCGGTTGGAACGTTCCGATT
GGGATGACAACCCCGGTGAGCACTCCCACACACCAAGTTCAGATCAGGGT
CGTTATAATAGTGATTTTGAGTCTGCTGCCAAGGTTGCTGATGGCGATGC
CCCTCTTGATGGATATGAGCAAGAAGCTGACCTCAGCGAAGATGACTTTG
CCAAGCTTTCCGATGGTGGTGATTCTGTCGACTGGTCAGCGAAGTACGAC
CCTGATGGAGCTATGTGGCTGAAGAATTTGACCAAGCAATACTACAGCCA
ACCCCTCGACAATGCCCAACCAGTTCATCTCTTTGAAGAGCAAAAGTATT
GTCCCGAAAACGCAAAAGGGTATGCTCAGAGATTTCTGATAGCTCTTCAG
CTCCTTGCACTGATTACACGATTCGAGTCATGA
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protein sequence of Gvermi2083.t1

>Gvermi2083.t1 ID=Gvermi2083.t1|Name=Gvermi2083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=461bp
MDQWGRGIRLKAFGLSRKNQWLGKQEPAKINQREDYVLARALTVCQANVT
FATSPVGKAVERRTPMKFANGIRRNNGSREGWRIEAVDRVIAKLVVFTRD
AQIALVGGGMTLSIRHTKPHIAIGGQWPEVKQQVHLVRGGRHCPTIHVST
LRSVLSEPGFVAANLIVVRFATGTEGLDKKIEAEQCLSFRVQTYAGNNGI
DHFVIRKDLAVSNDENQQSLSFSLPNLVRLYKASVDPLTGAPPLNLYQFC
VQQYNCIPSFYGFNDKARWPLEEGYSKAMLYIFYPHDGDMESLRIDGSYA
KKLEKVMFDDPFPREKLVEIMRQQNNWRLERSDWDDNPGEHSHTPSSDQG
RYNSDFESAAKVADGDAPLDGYEQEADLSEDDFAKLSDGGDSVDWSAKYD
PDGAMWLKNLTKQYYSQPLDNAQPVHLFEEQKYCPENAKGYAQRFLIALQ
LLALITRFES*
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mRNA from alignment at ScGOVlb_191:91138..92871-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2083.t1 ID=Gvermi2083.t1|Name=Gvermi2083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_191:91138..92871- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCAATGGGGTCGGGGCATAAGGCTCAAGGCGTTCGGACTCAGTCG
GAAGAACCAATGGCTCGGTAAACAGGAGCCTGCAAAGATAAATCAAAGGG
AAGACTATGTCCTGGCGAGAGCGCTTACAGTGTGCCAGGCGAATGTAACA
TTCGCCACCAGCCCGGTCGGTAAGGCTGTTGAACGCCGTACACCCATGAA
GTTTGCTAATGGCATCAGGAGAAACAATGGTAGCCGGGAGGGTTGGCGTA
TAGAAGCAGTGGACCGTGTTATAGCCAAGCTCGTTGTTTTCACTCGGGAT
GCGCAAATAGCCTTGGTGGGTGGGGGAATGACTCTGTCCATCCGCCACAC
GAAGCCGCACATTGCTATTGGAGGGCAGTGGCCTGAAGTGAAACAGCAGG
TGCACTTGGTCCGTGGTGGACGCCATTGCCCCACCATCCATGTGAGCACG
TTGCGGAGCGTCTTGTCGGAGCCGGGGTTCGTCGCGGCGAATCTTATCGT
AGTACGCTTCGCCACTGGTACCGAGGGACTGGACAAGAAAATCGAGGCCG
AACAGTGCCTGTCCTTTCGGGTGCAGACGTATGCGGGCAATAATGGCATC
GATCACTTCGTCATCAGAAAGGTTCGGCGGAAAGTCGCGTGATGAAAAAG
AAGAAGACGGAGGACCTCGGGACGACTGCAGAGCAGGCTTTCGTTTGCTC
TTGCCACGCCGTCGTAGACGCCGATGGGTAGGGACATGTTGGACCGGGCA
ATCGTCGCCATATGTAACGTCTTGCAGTGTCGTGACAGCACTCAAGTTGA
ACTCAGCCTCGACAGGGTCGTCATCATCCAATAGACCCAGAGCATGAAGG
TCATAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNATTCGTCTGCAGGATCTTGCTGTTTCCAATGACGAAAATC
AACAATCATTATCATTCTCTTTGCCAAACCTGGTGAGACTGTACAAAGCA
TCAGTCGATCCACTAACTGGAGCACCTCCGCTGAACTTGTACCAGTTTTG
TGTACAACAATACAATTGTATTCCAAGCTTCTATGGTTTTAACGACAAAG
CGAGATGGCCCCTGGAGGAAGGCTACTCCAAGGCAATGCTTTATATCTTT
TACCCCCACGATGGTGACATGGAATCGCTTCGCATCGATGGGTCCTACGC
AAAGAAGCTTGAAAAGGTCATGTTTGATGATCCTTTTCCAAGAGAAAAAT
TGGTTGAGATTATGCGACAACAAAACAACTGGCGGTTGGAACGTTCCGAT
TGGGATGACAACCCCGGTGAGCACTCCCACACACCAAGTTCAGATCAGGG
TCGTTATAATAGTGATTTTGAGTCTGCTGCCAAGGTTGCTGATGGCGATG
CCCCTCTTGATGGATATGAGCAAGAAGCTGACCTCAGCGAAGATGACTTT
GCCAAGCTTTCCGATGGTGGTGATTCTGTCGACTGGTCAGCGAAGTACGA
CCCTGATGGAGCTATGTGGCTGAAGAATTTGACCAAGCAATACTACAGCC
AACCCCTCGACAATGCCCAACCAGTTCATCTCTTTGAAGAGCAAAAGTAT
TGTCCCGAAAACGCAAAAGGGTATGCTCAGAGATTTCTGATAGCTCTTCA
GCTCCTTGCACTGATTACACGATTCGAGTCATGA
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Coding sequence (CDS) from alignment at ScGOVlb_191:91138..92871-

>Gvermi2083.t1 ID=Gvermi2083.t1|Name=Gvermi2083.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1383bp|location=Sequence derived from alignment at ScGOVlb_191:91138..92871- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGATCAATGGGGTCGGGGCATAAGGCTCAAGGCGTTCGGACTCAGTCG
GAAGAACCAATGGCTCGGTAAACAGGAGCCTGCAAAGATAAATCAAAGGG
AAGACTATGTCCTGGCGAGAGCGCTTACAGTGTGCCAGGCGAATGTAACA
TTCGCCACCAGCCCGGTCGGTAAGGCTGTTGAACGCCGTACACCCATGAA
GTTTGCTAATGGCATCAGGAGAAACAATGGTAGCCGGGAGGGTTGGCGTA
TAGAAGCAGTGGACCGTGTTATAGCCAAGCTCGTTGTTTTCACTCGGGAT
GCGCAAATAGCCTTGGTGGGTGGGGGAATGACTCTGTCCATCCGCCACAC
GAAGCCGCACATTGCTATTGGAGGGCAGTGGCCTGAAGTGAAACAGCAGG
TGCACTTGGTCCGTGGTGGACGCCATTGCCCCACCATCCATGTGAGCACG
TTGCGGAGCGTCTTGTCGGAGCCGGGGTTCGTCGCGGCGAATCTTATCGT
AGTACGCTTCGCCACTGGTACCGAGGGACTGGACAAGAAAATCGAGGCCG
AACAGTGCCTGTCCTTTCGGGTGCAGACGTATGCGGGCAATAATGGCATC
GATCACTTCGTCATCAGAAAGGATCTTGCTGTTTCCAATGACGAAAATCA
ACAATCATTATCATTCTCTTTGCCAAACCTGGTGAGACTGTACAAAGCAT
CAGTCGATCCACTAACTGGAGCACCTCCGCTGAACTTGTACCAGTTTTGT
GTACAACAATACAATTGTATTCCAAGCTTCTATGGTTTTAACGACAAAGC
GAGATGGCCCCTGGAGGAAGGCTACTCCAAGGCAATGCTTTATATCTTTT
ACCCCCACGATGGTGACATGGAATCGCTTCGCATCGATGGGTCCTACGCA
AAGAAGCTTGAAAAGGTCATGTTTGATGATCCTTTTCCAAGAGAAAAATT
GGTTGAGATTATGCGACAACAAAACAACTGGCGGTTGGAACGTTCCGATT
GGGATGACAACCCCGGTGAGCACTCCCACACACCAAGTTCAGATCAGGGT
CGTTATAATAGTGATTTTGAGTCTGCTGCCAAGGTTGCTGATGGCGATGC
CCCTCTTGATGGATATGAGCAAGAAGCTGACCTCAGCGAAGATGACTTTG
CCAAGCTTTCCGATGGTGGTGATTCTGTCGACTGGTCAGCGAAGTACGAC
CCTGATGGAGCTATGTGGCTGAAGAATTTGACCAAGCAATACTACAGCCA
ACCCCTCGACAATGCCCAACCAGTTCATCTCTTTGAAGAGCAAAAGTATT
GTCCCGAAAACGCAAAAGGGTATGCTCAGAGATTTCTGATAGCTCTTCAG
CTCCTTGCACTGATTACACGATTCGAGTCATGA
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