Gvermi2085.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi2085.t1
Unique NameGvermi2085.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length268
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_191contigScGOVlb_191:98757..101571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi2085Gvermi2085Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_191 98757..101571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2085.t1Gvermi2085.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_191 98757..101571 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2085.t1.start1Gvermi2085.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_191 98757..98759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2085.t1.CDS1Gvermi2085.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 98757..99442 +
Gvermi2085.t1.CDS2Gvermi2085.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_191 101454..101571 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2085.t1.exon1Gvermi2085.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 98757..99442 +
Gvermi2085.t1.exon2Gvermi2085.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_191 101454..101571 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2085.t1.intron1Gvermi2085.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_191 99443..101453 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi2085.t1.stop1Gvermi2085.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_191 101569..101571 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi2085.t1 ID=Gvermi2085.t1|Name=Gvermi2085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=268bp
MVETKATREAAFAKFLLEVCECGPDHDSTIALTKAGMKTMRDFLTASMEW
FKEEMEYPARDEDDNVIPDKTVKAPSWHYRLLLYARQYCKFQLDELGIGE
LTSELIDAIDKEAFDLYRIREDLYDEDSPKTKSKRGTTSGEGDGNTSRAP
AGAVAQTAEEKQLADFRKGVKRDMSIFPLLKDDSGYEAYSRTLHAIAHAQ
GVSDVLNGEFKPNFDKASNELFKEKNVFITEGPASTFNTHLFKLISKNLC
KPMNVGFPFAIFDSLGI*
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spliced messenger RNA

>Gvermi2085.t1 ID=Gvermi2085.t1|Name=Gvermi2085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=804bp|location=Sequence derived from alignment at ScGOVlb_191:98757..101571+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAAACTAAGGCAACGCGTGAGGCAGCGTTTGCAAAGTTCTTGTT
GGAAGTATGCGAATGTGGCCCTGACCATGATTCTACTATTGCGCTTACAA
AAGCTGGCATGAAGACTATGCGCGATTTTTTGACTGCATCCATGGAATGG
TTTAAGGAGGAGATGGAATACCCTGCGAGAGATGAAGATGATAATGTCAT
CCCAGATAAAACAGTTAAAGCTCCATCATGGCACTACCGTCTACTACTAT
ACGCTCGTCAATACTGTAAATTCCAACTAGACGAGTTGGGGATTGGTGAG
CTCACGAGTGAACTGATTGACGCAATTGACAAAGAGGCATTCGACTTGTA
CCGCATTCGCGAAGACCTTTACGATGAAGATAGCCCCAAGACCAAATCGA
AAAGGGGCACTACTAGTGGTGAAGGTGATGGCAATACGAGTCGCGCGCCC
GCTGGTGCCGTTGCCCAAACTGCAGAAGAAAAACAGTTGGCTGATTTTCG
AAAGGGAGTCAAACGTGACATGAGCATCTTTCCACTACTAAAGGATGACA
GTGGCTACGAGGCATACTCGCGCACACTACACGCTATTGCGCACGCCCAA
GGCGTCAGCGATGTTCTCAACGGCGAATTTAAGCCCAACTTCGACAAAGC
ATCGAATGAACTGTTCAAGGAAAAGAACGTATTTATCACCGAGGGGCCGG
CCTCGACGTTTAACACCCATCTCTTTAAGCTTATCTCCAAAAATCTTTGC
AAGCCTATGAACGTCGGCTTTCCGTTTGCCATCTTTGACAGCCTTGGCAT
ATAA
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protein sequence of Gvermi2085.t1

>Gvermi2085.t1 ID=Gvermi2085.t1|Name=Gvermi2085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=268bp
MVETKATREAAFAKFLLEVCECGPDHDSTIALTKAGMKTMRDFLTASMEW
FKEEMEYPARDEDDNVIPDKTVKAPSWHYRLLLYARQYCKFQLDELGIGE
LTSELIDAIDKEAFDLYRIREDLYDEDSPKTKSKRGTTSGEGDGNTSRAP
AGAVAQTAEEKQLADFRKGVKRDMSIFPLLKDDSGYEAYSRTLHAIAHAQ
GVSDVLNGEFKPNFDKASNELFKEKNVFITEGPASTFNTHLFKLISKNLC
KPMNVGFPFAIFDSLGI*
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mRNA from alignment at ScGOVlb_191:98757..101571+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi2085.t1 ID=Gvermi2085.t1|Name=Gvermi2085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2815bp|location=Sequence derived from alignment at ScGOVlb_191:98757..101571+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGAAACTAAGGCAACGCGTGAGGCAGCGTTTGCAAAGTTCTTGTT
GGAAGTATGCGAATGTGGCCCTGACCATGATTCTACTATTGCGCTTACAA
AAGCTGGCATGAAGACTATGCGCGATTTTTTGACTGCATCCATGGAATGG
TTTAAGGAGGAGATGGAATACCCTGCGAGAGATGAAGATGATAATGTCAT
CCCAGATAAAACAGTTAAAGCTCCATCATGGCACTACCGTCTACTACTAT
ACGCTCGTCAATACTGTAAATTCCAACTAGACGAGTTGGGGATTGGTGAG
CTCACGAGTGAACTGATTGACGCAATTGACAAAGAGGCATTCGACTTGTA
CCGCATTCGCGAAGACCTTTACGATGAAGATAGCCCCAAGACCAAATCGA
AAAGGGGCACTACTAGTGGTGAAGGTGATGGCAATACGAGTCGCGCGCCC
GCTGGTGCCGTTGCCCAAACTGCAGAAGAAAAACAGTTGGCTGATTTTCG
AAAGGGAGTCAAACGTGACATGAGCATCTTTCCACTACTAAAGGATGACA
GTGGCTACGAGGCATACTCGCGCACACTACACGCTATTGCGCACGCCCAA
GGCGTCAGCGATGTTCTCAACGGCGAATTTAAGCCCAACTTCGACAAAGC
ATCGAATGAACTGTTCAAGGAAAAGAACGTATTTATGTACGCGGTATTCa
acaccaccattcggacatcgattgggcagacctttgttcgcgaacatgcc
aaagatggaaacgcccaagcagtcttcactaaactggaggaacattacac
tgcgtctaccagtgcaggctacgtcaaaacagaacttctaggcaagatta
cagggcaattgaaacttgacgaacagtggaacagtacacttcagggattc
gtgcttcactggaaggaactcatgcgcaagtacgaggatgtcgcgcccaa
aacggagcatatgcatgacgcattgaaaaagacactcctacaatcggctg
tttaccgttctgacgaactgcgacgtgtccaacagCTGGAAGCACAGAAT
GTGTCTAACGGAAGTCCAGAGTCTAGTTATGAGCAGTATATAACTTTACT
AATTTCTGCTGCTACCTCACATGACAAGGTTGTTGGTCAGCCTTCTCGTC
ATTCACGATTCGTCAATATGGTCAATTTAGACGCTCCGACAGAAACTTAT
ACCAACAATGGGGAGGAGAGTTCGTACTCAGCCAATAAAACGTCGATCAC
GGATTGGCAGGACTCAAGTGCAGGATCAAGCGGAGGAATGTGTGACTCTA
GTACGAGCACCTGCAGCGGCTACACCGTGAATCGCACGTACATACCACCT
CCAATGTGGCGCGAAGTGTGCAAAATACCTGGTTTGCGCGAAATTCTGCA
GAAAGATGAGATCAGCGGCAATCCTGTGCGAGCGAGGATAAAGCGCCTAT
GCGCAGTAGTACATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNACATGGTGGTAACCATGCCCAAACCATGCGACGA
CGGAGTTCGACGAGCAGTGCTGACAGTGTTGCTGAATTATGCGGCAGCAC
ACGCCAGTTTGGCTGACCTTACCCGCCCACACAAGCCTGTTTGTGTTGGA
AGAAACAAACAATGTCGCTGCGTCGGCCGCGAGTAACGTATAGTAGTGCG
GTACCAAGAGAATGAACAACACCAACAGACCCAGCGTATGTACAGTAGTG
CGGTACCAAGAGAATGAACCACAGCAACAGCAGCAGCGTAAGCAACGCTG
GGCGCAGTGAGCAACACCACTAGGTGAGCGCAACCCAATTGTGCGAGGAT
CGCTCCCTACGCTAAGACTAAAGTATGGGGGCTAGAAACAAGGAACAGTT
TTACTACATTATTAATGATAATATTACAACTCTCGTCCAGACTTACACTC
CTCCACTGCCTCTTGTCTGGATATACAGCACACTACCGTCTGCAGCAGTG
GCGTGGCCATTTCGATTGAGCTCAAGCGCCCTATGCTTCATCTCCTCTTC
CACTTCTCGACGAGCAATTTCGTTTCTCTCCTTGTCTTTCTCACGCATTT
CGTCAGTCCAATCTATGCGATCAACAAAAGGGCCAAACTCATCCTCAAAG
CGCCActgctgcaaaggaggctgccgctctgcacactgcgaagggcgccg
ccgcctccggtgctgctggaacgaaggctgcacgatggcatatggtgaac
aaggcggcagctgcgaaaaaggcggtggctgctgatgctgctgaaaaaaa
ggtggcgtctgatgatgttactgcatgtgctgctgcacatgtggcgcatg
ctgatgctgtagcggcggctgcaaaaaaaggaagtggctgctgctgctgc
aaaaaaggcgctctctgatgctgttggggctgtagcggcggctagagaaa
aggcagtggctgctgctgctgctgctgcaaaaaaggcgctctctgatgct
gttgctgctgcacatgagggtgacctagggcatggggcacatgctggtgc
tgtagcggcggctgcagaaaaggcggtggctgctgctgctggtgcaaagg
aggctgctgcacatgctgccttcttgctatagtgcgagcgctCTCAGCAC
CGAGGGGCCGGCCTCGACGTTTAACACCCATCTCTTTAAGCTTATCTCCA
AAAATCTTTGCAAGCCTATGAACGTCGGCTTTCCGTTTGCCATCTTTGAC
AGCCTTGGCATATAA
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Coding sequence (CDS) from alignment at ScGOVlb_191:98757..101571+

>Gvermi2085.t1 ID=Gvermi2085.t1|Name=Gvermi2085.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=804bp|location=Sequence derived from alignment at ScGOVlb_191:98757..101571+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTGGAAACTAAGGCAACGCGTGAGGCAGCGTTTGCAAAGTTCTTGTT
GGAAGTATGCGAATGTGGCCCTGACCATGATTCTACTATTGCGCTTACAA
AAGCTGGCATGAAGACTATGCGCGATTTTTTGACTGCATCCATGGAATGG
TTTAAGGAGGAGATGGAATACCCTGCGAGAGATGAAGATGATAATGTCAT
CCCAGATAAAACAGTTAAAGCTCCATCATGGCACTACCGTCTACTACTAT
ACGCTCGTCAATACTGTAAATTCCAACTAGACGAGTTGGGGATTGGTGAG
CTCACGAGTGAACTGATTGACGCAATTGACAAAGAGGCATTCGACTTGTA
CCGCATTCGCGAAGACCTTTACGATGAAGATAGCCCCAAGACCAAATCGA
AAAGGGGCACTACTAGTGGTGAAGGTGATGGCAATACGAGTCGCGCGCCC
GCTGGTGCCGTTGCCCAAACTGCAGAAGAAAAACAGTTGGCTGATTTTCG
AAAGGGAGTCAAACGTGACATGAGCATCTTTCCACTACTAAAGGATGACA
GTGGCTACGAGGCATACTCGCGCACACTACACGCTATTGCGCACGCCCAA
GGCGTCAGCGATGTTCTCAACGGCGAATTTAAGCCCAACTTCGACAAAGC
ATCGAATGAACTGTTCAAGGAAAAGAACGTATTTATCACCGAGGGGCCGG
CCTCGACGTTTAACACCCATCTCTTTAAGCTTATCTCCAAAAATCTTTGC
AAGCCTATGAACGTCGGCTTTCCGTTTGCCATCTTTGACAGCCTTGGCAT
ATAA
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