Gvermi6064.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6064.t1
Unique NameGvermi6064.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length185
Homology
BLAST of Gvermi6064.t1 vs. uniprot
Match: A0A2V3IJP5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJP5_9FLOR)

HSP 1 Score: 93.6 bits (231), Expect = 7.830e-19
Identity = 45/73 (61.64%), Postives = 61/73 (83.56%), Query Frame = 0
Query:   17 LGTQDVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDA 89
            + + ++GR+AA+F I HA VELFASS+T  TK+RGL+DILSLA+E  EIPVRLG+E++LR LA + PV+L+DA
Sbjct: 1867 ISSLNIGRIAAHFYIRHATVELFASSITPKTKLRGLIDILSLASEFGEIPVRLGDEDVLRNLAARVPVSLEDA 1939          
BLAST of Gvermi6064.t1 vs. uniprot
Match: R7QM15_CHOCR (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM15_CHOCR)

HSP 1 Score: 82.0 bits (201), Expect = 8.000e-15
Identity = 39/72 (54.17%), Postives = 59/72 (81.94%), Query Frame = 0
Query:   17 LGTQDVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQD 88
            LG  ++G +AA+F I HA VELFASS+T NTK+ GLL+ILSLA+E+ +IPVR+GEE++L++++   P+++ D
Sbjct: 1914 LGALNLGIIAAHFYIRHATVELFASSITPNTKLGGLLNILSLASELGDIPVRIGEEDVLKRISQDLPLSMND 1985          
BLAST of Gvermi6064.t1 vs. uniprot
Match: A0A2P6TQ19_CHLSO (U5 small nuclear ribonucleo 200 kDa helicase-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TQ19_CHLSO)

HSP 1 Score: 75.5 bits (184), Expect = 1.470e-12
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 0
Query:   21 DVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFS 92
            ++G +AAY+ I +  +ELFASS+TA TK++GLL+ILS A+E  EIPVR GEE +++KL   AP+A+   +F+
Sbjct: 1828 NLGMIAAYYYIAYTTIELFASSLTAKTKLKGLLEILSSASEYDEIPVRPGEERVVQKLLQHAPLAVDKPKFT 1899          
BLAST of Gvermi6064.t1 vs. uniprot
Match: UPI0006C9688E (putative U5 small nuclear ribonucleoprotein 200 kDa helicase n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C9688E)

HSP 1 Score: 73.6 bits (179), Expect = 6.810e-12
Identity = 39/76 (51.32%), Postives = 55/76 (72.37%), Query Frame = 0
Query:   17 LGTQDVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFS 92
            +G  ++G +AAY+ I +A VE+F+ S+ A+TK+RGLL+I+S AAE S IPVR  EE+LLR LA + P A Q  R +
Sbjct: 1803 VGALNLGMIAAYYYINYATVEVFSGSLKASTKIRGLLEIISHAAEYSCIPVRQREEDLLRSLAARLPHAPQGKRMA 1878          
BLAST of Gvermi6064.t1 vs. uniprot
Match: A0A2P6V4J1_9CHLO (U5 small nuclear ribonucleo 200 kDa helicase-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V4J1_9CHLO)

HSP 1 Score: 73.2 bits (178), Expect = 9.260e-12
Identity = 35/72 (48.61%), Postives = 54/72 (75.00%), Query Frame = 0
Query:   21 DVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFS 92
            ++G +AAY+ I +  +ELFASS+TA TK++GLLDILS A+E  ++PVR GEE + +KL   AP+A+   +++
Sbjct: 1828 NLGMIAAYYYIAYTTIELFASSLTAKTKLKGLLDILSSASEYDDLPVRPGEERVFQKLLQHAPLAVDRPKYT 1899          
BLAST of Gvermi6064.t1 vs. uniprot
Match: E9GW45_DAPPU (Uncharacterized protein n=6 Tax=Daphnia TaxID=6668 RepID=E9GW45_DAPPU)

HSP 1 Score: 72.8 bits (177), Expect = 1.260e-11
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 0
Query:   21 DVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQ-DARFS 92
            ++G +AAY+CI +  +ELF+ S+ A TK+RGLL+I+S AAE   +PVR GEE +LR+LA + P   Q +A+FS
Sbjct: 1787 NLGMIAAYYCIHYTTIELFSLSLNAKTKIRGLLEIISAAAEYKSVPVRHGEEAVLRQLATRLPNKPQTNAKFS 1859          
BLAST of Gvermi6064.t1 vs. uniprot
Match: A0A7S3NI64_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI64_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.710e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 0
Query:   21 DVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFSLREEHDVSDIFG 104
            ++G +AAY+CI +  VE+FASSVTA +K+  LL+IL+ A E S +P+RLGEEE L+K+A   P      RF    E+   ++F 
Sbjct: 1817 NLGMIAAYYCIQYTTVEMFASSVTAKSKILSLLEILASATEYSTLPIRLGEEEALQKIAAHLP------RFKPPTENTTDELFS 1894          
BLAST of Gvermi6064.t1 vs. uniprot
Match: A0A2V0P1N9_9CHLO (DNA polymerase epsilon catalytic subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P1N9_9CHLO)

HSP 1 Score: 71.6 bits (174), Expect = 3.080e-11
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 0
Query:   21 DVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFS 92
            ++G +AAY+ I +  VELFASS+TA TK++GLL+I+S A+E   +PVR GEE  + KL   APVA+   R++
Sbjct: 1192 NLGMIAAYYGIAYTTVELFASSLTAKTKLKGLLEIVSAASEFDTLPVRPGEEAAVEKLLAHAPVAVDRPRYT 1263          
BLAST of Gvermi6064.t1 vs. uniprot
Match: K8YVZ6_NANGC (Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YVZ6_NANGC)

HSP 1 Score: 71.6 bits (174), Expect = 3.120e-11
Identity = 37/78 (47.44%), Postives = 57/78 (73.08%), Query Frame = 0
Query:   16 RLGTQDVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQD-ARFS 92
            +L   ++G +AAY+ + +  +ELFASSVTA TKV+GLL+ILS A+E  ++ +R GEE +L++LA + P  L + ARF+
Sbjct: 1425 QLSPLNLGMIAAYYYVQYTTIELFASSVTAKTKVKGLLEILSSASEYGDLAIRQGEERVLQQLATRLPQKLPEGARFT 1502          
BLAST of Gvermi6064.t1 vs. uniprot
Match: A0A7S2ZNW3_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZNW3_9RHOD)

HSP 1 Score: 71.6 bits (174), Expect = 3.150e-11
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = 0
Query:   17 LGTQDVGRVAAYFCIGHAPVELFASSVTANTKVRGLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFSLR 94
            LG  ++G VAAY+ I +  VE FAS +   T+ RGLL++LS A E  E+PVRLG+++ LRK+A  AP+AL      LR
Sbjct: 1859 LGPLNLGMVAAYYYIKYTTVERFASWILPKTRNRGLLEVLSRAKEFDEVPVRLGDDDALRKIAAHAPIALGSENEVLR 1936          
The following BLAST results are available for this feature:
BLAST of Gvermi6064.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJP5_9FLOR7.830e-1961.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QM15_CHOCR8.000e-1554.17Pre-mRNA-splicing helicase BRR2 n=1 Tax=Chondrus c... [more]
A0A2P6TQ19_CHLSO1.470e-1251.39U5 small nuclear ribonucleo 200 kDa helicase-like ... [more]
UPI0006C9688E6.810e-1251.32putative U5 small nuclear ribonucleoprotein 200 kD... [more]
A0A2P6V4J1_9CHLO9.260e-1248.61U5 small nuclear ribonucleo 200 kDa helicase-like ... [more]
E9GW45_DAPPU1.260e-1150.68Uncharacterized protein n=6 Tax=Daphnia TaxID=6668... [more]
A0A7S3NI64_9STRA1.710e-1145.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2V0P1N9_9CHLO3.080e-1150.00DNA polymerase epsilon catalytic subunit n=1 Tax=R... [more]
K8YVZ6_NANGC3.120e-1147.44Pre-mRNA-splicing helicase BRR2 n=1 Tax=Nannochlor... [more]
A0A7S2ZNW3_9RHOD3.150e-1148.72Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004179Sec63 domainPFAMPF02889Sec63coord: 20..87
e-value: 3.0E-12
score: 46.3
NoneNo IPR availableGENE3D1.10.3380.10coord: 11..124
e-value: 4.4E-13
score: 51.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..184
NoneNo IPR availablePANTHERPTHR24075SEC63 DOMAIN-CONTAININGcoord: 21..91
NoneNo IPR availablePANTHERPTHR24075:SF13U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 200 KDA HELICASEcoord: 21..91
NoneNo IPR availableSUPERFAMILY158702Sec63 N-terminal domain-likecoord: 48..88

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1948449..1949053 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6064.t1Gvermi6064.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1948449..1949053 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6064.t1 ID=Gvermi6064.t1|Name=Gvermi6064.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=185bp
METDEDNLDPEHSQQRLGTQDVGRVAAYFCIGHAPVELFASSVTANTKVR
GLLDILSLAAEVSEIPVRLGEEELLRKLAIKAPVALQDARFSLREEHDVS
DIFGFLDMEDEDRSEVLKSLTSKQVLELSEAGQASPNINDFVIESVRSST
DEGGTMVGGGSKPGNKHIAEFETYSTQKTSKSEA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004179Sec63-dom