Gvermi5834.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi5834.t1
Unique Name	Gvermi5834.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:286203..287591 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703212.1
Preferred name	CLP1
PFAMs	CLP1_N,CLP1_P,Clp1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14399
KEGG Pathway	ko03015,map03015
GOs	GO:0000003,GO:0000166,GO:0000214,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006388,GO:0006396,GO:0006397,GO:0006399,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009117,GO:0009791,GO:0009892,GO:0009908,GO:0009987,GO:0010228,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016246,GO:0016301,GO:0016310,GO:0016441,GO:0016458,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019205,GO:0019222,GO:0019438,GO:0019637,GO:0021510,GO:0021515,GO:0021517,GO:0021522,GO:0021549,GO:0021695,GO:0021953,GO:0022008,GO:0022037,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030154,GO:0030182,GO:0030423,GO:0030554,GO:0030902,GO:0031047,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035087,GO:0035194,GO:0035639,GO:0036094,GO:0040029,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046939,GO:0048367,GO:0048513,GO:0048519,GO:0048608,GO:0048699,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0051731,GO:0051732,GO:0051733,GO:0051734,GO:0051736,GO:0055086,GO:0060255,GO:0060322,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070922,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090567,GO:0097159,GO:0097367,GO:0097659,GO:0099402,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1902555,GO:1905348
Evalue	3.65e-87
EggNOG OGs	COG5623@1\|root,KOG2749@2759\|Eukaryota
EC	2.7.1.78
Description	mRNA 3'-end processing
COG category	A
BRITE	ko00000,ko00001,ko01000,ko03019

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5834	Gvermi5834	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_1708 286203..287591 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5834.t1.stop1	Gvermi5834.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_1708 286203..286205 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5834.t1.CDS1	Gvermi5834.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_1708 286203..287591 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5834.t1.exon1	Gvermi5834.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_1708 286203..287591 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5834.t1.start1	Gvermi5834.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_1708 287589..287591 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi5834.t1	Gvermi5834.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_1708 286203..287591 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_1708:286203..287591-
coding sequence from alignment at ScGOVlb_1708:286203..287591-

mRNA sequence

>Gvermi5834.t1 ID=Gvermi5834.t1|Name=Gvermi5834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=463bp
LDGRALHPSIAGAFALSSDRLARTLAESVAMALDQSEQPNDYEPRMFTLP
SEHELRFEIPPDVATASLSLQSGSAELFGLALAQNKPYHLPSALNAAAFT
WHGAQLALRAPPHVMAYTATDTPMPSYINAHSVLQSKRVIARRAGIPGPR
AIVVGPHDCGKTALVNILAAYCVRANRTAVVADMDPSAGGAVGTMPATIA
LSLVSHLDLEAGNLVHERVATLMVGHHSPRFNVPVSENVFNKLGAMVDKM
LSMSHLNPWVGVLADTSGDILAKDGTDGVIQAIRAIKADVVFVLGAERLY
AAIKSTFESTPTEAVLLAKSGGVVSRDEETRQSLRSAAIKAYFYGADNRL
SPFSTALEFDKVTVLRIGGEATVVPDSVLPAGASSSLDPLKPVRITSVAD
VLHNVLAVSQATDEKDVFDKPLYGFLHVVKVDVERNTMTVLAPSPGNVPG
DILLAGDTTWVE*

spliced messenger RNA

>Gvermi5834.t1 ID=Gvermi5834.t1|Name=Gvermi5834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at ScGOVlb_1708:286203..287591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGATGGCAGAGCGCTCCATCCATCGATAGCCGGAGCATTCGCCCTCTC
AAGTGACCGCTTGGCGCGCACCCTCGCCGAGTCGGTCGCCATGGCGCTCG
ACCAGAGCGAGCAGCCCAACGACTACGAGCCGCGCATGTTCACGCTGCCC
TCCGAGCACGAGCTGCGCTTCGAGATCCCCCCCGATGTCGCCACCGCCAG
CCTCTCCCTTCAGTCGGGCTCTGCCGAGCTGTTCGGGCTCGCCCTCGCGC
AGAACAAGCCGTATCACCTTCCCAGCGCCCTCAACGCCGCTGCCTTCACC
TGGCATGGCGCCCAGCTCGCGCTGCGCGCCCCGCCGCATGTCATGGCCTA
CACCGCCACCGACACGCCCATGCCCTCCTACATCAACGCCCACTCCGTGC
TGCAGAGCAAGCGCGTCATCGCGCGTCGCGCCGGTATTCCCGGCCCGCGT
GCCATCGTCGTCGGTCCGCACGACTGCGGCAAGACTGCCCTCGTCAACAT
TCTTGCCGCCTACTGCGTACGCGCGAATCGCACCGCCGTCGTCGCCGACA
TGGACCCTTCCGCCGGCGGCGCGGTGGGCACCATGCCGGCCACCATCGCC
CTGTCGCTTGTGTCCCACCTCGATCTGGAAGCGGGCAACCTGGTCCATGA
GCGCGTCGCAACCTTGATGGTGGGCCACCATTCGCCGAGATTCAACGTTC
CGGTGAGCGAGAATGTGTTTAACAAGCTTGGCGCCATGGTCGACAAGATG
CTCAGCATGTCCCATCTCAACCCCTGGGTAGGCGTCCTGGCGGATACTAG
CGGCGATATTCTGGCCAAAGATGGCACCGATGGCGTCATCCAAGCCATTC
GCGCCATCAAGGCCGACGTCGTCTTTGTCCTGGGCGCCGAACGTCTTTAC
GCCGCCATCAAGTCTACCTTTGAAAGCACTCCCACGGAGGCCGTTTTGTT
GGCCAAGAGCGGCGGTGTGGTTTCTAGGGACGAGGAAACCAGACAGAGTT
TGCGATCTGCTGCCATCAAAGCGTACTTTTACGGCGCCGACAACAGACTG
AGCCCCTTTTCAACGGCCCTTGAGTTTGACAAGGTGACCGTCCTGCGCAT
CGGCGGCGAAGCCACTGTCGTTCCTGACAGTGTGCTTCCGGCCGGCGCTT
CCAGTTCCCTTGATCCGCTCAAGCCGGTGCGTATCACCTCCGTGGCCGAC
GTGCTACATAATGTGCTTGCCGTCAGTCAAGCCACTGACGAGAAGGACGT
TTTTGACAAGCCCCTGTACGGGTTTTTGCACGTTGTAAAAGTAGATGTTG
AACGGAACACTATGACTGTGCTTGCCCCGTCACCCGGAAACGTGCCAGGC
GATATATTGCTTGCGGGAGATACTACATGGGTCGAGTAG

protein sequence of Gvermi5834.t1

>Gvermi5834.t1 ID=Gvermi5834.t1|Name=Gvermi5834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=463bp
LDGRALHPSIAGAFALSSDRLARTLAESVAMALDQSEQPNDYEPRMFTLP
SEHELRFEIPPDVATASLSLQSGSAELFGLALAQNKPYHLPSALNAAAFT
WHGAQLALRAPPHVMAYTATDTPMPSYINAHSVLQSKRVIARRAGIPGPR
AIVVGPHDCGKTALVNILAAYCVRANRTAVVADMDPSAGGAVGTMPATIA
LSLVSHLDLEAGNLVHERVATLMVGHHSPRFNVPVSENVFNKLGAMVDKM
LSMSHLNPWVGVLADTSGDILAKDGTDGVIQAIRAIKADVVFVLGAERLY
AAIKSTFESTPTEAVLLAKSGGVVSRDEETRQSLRSAAIKAYFYGADNRL
SPFSTALEFDKVTVLRIGGEATVVPDSVLPAGASSSLDPLKPVRITSVAD
VLHNVLAVSQATDEKDVFDKPLYGFLHVVKVDVERNTMTVLAPSPGNVPG
DILLAGDTTWVE*

mRNA from alignment at ScGOVlb_1708:286203..287591-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi5834.t1 ID=Gvermi5834.t1|Name=Gvermi5834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1389bp|location=Sequence derived from alignment at ScGOVlb_1708:286203..287591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGATGGCAGAGCGCTCCATCCATCGATAGCCGGAGCATTCGCCCTCTC
AAGTGACCGCTTGGCGCGCACCCTCGCCGAGTCGGTCGCCATGGCGCTCG
ACCAGAGCGAGCAGCCCAACGACTACGAGCCGCGCATGTTCACGCTGCCC
TCCGAGCACGAGCTGCGCTTCGAGATCCCCCCCGATGTCGCCACCGCCAG
CCTCTCCCTTCAGTCGGGCTCTGCCGAGCTGTTCGGGCTCGCCCTCGCGC
AGAACAAGCCGTATCACCTTCCCAGCGCCCTCAACGCCGCTGCCTTCACC
TGGCATGGCGCCCAGCTCGCGCTGCGCGCCCCGCCGCATGTCATGGCCTA
CACCGCCACCGACACGCCCATGCCCTCCTACATCAACGCCCACTCCGTGC
TGCAGAGCAAGCGCGTCATCGCGCGTCGCGCCGGTATTCCCGGCCCGCGT
GCCATCGTCGTCGGTCCGCACGACTGCGGCAAGACTGCCCTCGTCAACAT
TCTTGCCGCCTACTGCGTACGCGCGAATCGCACCGCCGTCGTCGCCGACA
TGGACCCTTCCGCCGGCGGCGCGGTGGGCACCATGCCGGCCACCATCGCC
CTGTCGCTTGTGTCCCACCTCGATCTGGAAGCGGGCAACCTGGTCCATGA
GCGCGTCGCAACCTTGATGGTGGGCCACCATTCGCCGAGATTCAACGTTC
CGGTGAGCGAGAATGTGTTTAACAAGCTTGGCGCCATGGTCGACAAGATG
CTCAGCATGTCCCATCTCAACCCCTGGGTAGGCGTCCTGGCGGATACTAG
CGGCGATATTCTGGCCAAAGATGGCACCGATGGCGTCATCCAAGCCATTC
GCGCCATCAAGGCCGACGTCGTCTTTGTCCTGGGCGCCGAACGTCTTTAC
GCCGCCATCAAGTCTACCTTTGAAAGCACTCCCACGGAGGCCGTTTTGTT
GGCCAAGAGCGGCGGTGTGGTTTCTAGGGACGAGGAAACCAGACAGAGTT
TGCGATCTGCTGCCATCAAAGCGTACTTTTACGGCGCCGACAACAGACTG
AGCCCCTTTTCAACGGCCCTTGAGTTTGACAAGGTGACCGTCCTGCGCAT
CGGCGGCGAAGCCACTGTCGTTCCTGACAGTGTGCTTCCGGCCGGCGCTT
CCAGTTCCCTTGATCCGCTCAAGCCGGTGCGTATCACCTCCGTGGCCGAC
GTGCTACATAATGTGCTTGCCGTCAGTCAAGCCACTGACGAGAAGGACGT
TTTTGACAAGCCCCTGTACGGGTTTTTGCACGTTGTAAAAGTAGATGTTG
AACGGAACACTATGACTGTGCTTGCCCCGTCACCCGGAAACGTGCCAGGC
GATATATTGCTTGCGGGAGATACTACATGGGTCGAGTAG

Coding sequence (CDS) from alignment at ScGOVlb_1708:286203..287591-

>Gvermi5834.t1 ID=Gvermi5834.t1|Name=Gvermi5834.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1389bp|location=Sequence derived from alignment at ScGOVlb_1708:286203..287591- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGATGGCAGAGCGCTCCATCCATCGATAGCCGGAGCATTCGCCCTCTC
AAGTGACCGCTTGGCGCGCACCCTCGCCGAGTCGGTCGCCATGGCGCTCG
ACCAGAGCGAGCAGCCCAACGACTACGAGCCGCGCATGTTCACGCTGCCC
TCCGAGCACGAGCTGCGCTTCGAGATCCCCCCCGATGTCGCCACCGCCAG
CCTCTCCCTTCAGTCGGGCTCTGCCGAGCTGTTCGGGCTCGCCCTCGCGC
AGAACAAGCCGTATCACCTTCCCAGCGCCCTCAACGCCGCTGCCTTCACC
TGGCATGGCGCCCAGCTCGCGCTGCGCGCCCCGCCGCATGTCATGGCCTA
CACCGCCACCGACACGCCCATGCCCTCCTACATCAACGCCCACTCCGTGC
TGCAGAGCAAGCGCGTCATCGCGCGTCGCGCCGGTATTCCCGGCCCGCGT
GCCATCGTCGTCGGTCCGCACGACTGCGGCAAGACTGCCCTCGTCAACAT
TCTTGCCGCCTACTGCGTACGCGCGAATCGCACCGCCGTCGTCGCCGACA
TGGACCCTTCCGCCGGCGGCGCGGTGGGCACCATGCCGGCCACCATCGCC
CTGTCGCTTGTGTCCCACCTCGATCTGGAAGCGGGCAACCTGGTCCATGA
GCGCGTCGCAACCTTGATGGTGGGCCACCATTCGCCGAGATTCAACGTTC
CGGTGAGCGAGAATGTGTTTAACAAGCTTGGCGCCATGGTCGACAAGATG
CTCAGCATGTCCCATCTCAACCCCTGGGTAGGCGTCCTGGCGGATACTAG
CGGCGATATTCTGGCCAAAGATGGCACCGATGGCGTCATCCAAGCCATTC
GCGCCATCAAGGCCGACGTCGTCTTTGTCCTGGGCGCCGAACGTCTTTAC
GCCGCCATCAAGTCTACCTTTGAAAGCACTCCCACGGAGGCCGTTTTGTT
GGCCAAGAGCGGCGGTGTGGTTTCTAGGGACGAGGAAACCAGACAGAGTT
TGCGATCTGCTGCCATCAAAGCGTACTTTTACGGCGCCGACAACAGACTG
AGCCCCTTTTCAACGGCCCTTGAGTTTGACAAGGTGACCGTCCTGCGCAT
CGGCGGCGAAGCCACTGTCGTTCCTGACAGTGTGCTTCCGGCCGGCGCTT
CCAGTTCCCTTGATCCGCTCAAGCCGGTGCGTATCACCTCCGTGGCCGAC
GTGCTACATAATGTGCTTGCCGTCAGTCAAGCCACTGACGAGAAGGACGT
TTTTGACAAGCCCCTGTACGGGTTTTTGCACGTTGTAAAAGTAGATGTTG
AACGGAACACTATGACTGTGCTTGCCCCGTCACCCGGAAACGTGCCAGGC
GATATATTGCTTGCGGGAGATACTACATGGGTCGAGTAG