Gvermi6207.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6207.t1
Unique NameGvermi6207.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length515
Homology
BLAST of Gvermi6207.t1 vs. uniprot
Match: A0A2V3IV81_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV81_9FLOR)

HSP 1 Score: 576 bits (1485), Expect = 9.370e-199
Identity = 281/500 (56.20%), Postives = 368/500 (73.60%), Query Frame = 0
Query:    3 SPPVILARAKGRDRKCLGSLSLFQSIILEGNAGIAFAGGHISVLKWHPEVRGVLATAAHRSDQTTHEFLKTYSGAAHIQLWSVINTSAKCLGVVEHDGDCTWDVKWRPGKSVRSSSDAWSGTFAAALGDGCILICRFHDISRAACGTPS---SVRVLPCSKTVLRESTERAPQGLARVVEWSLDGKRLLVGTTTGAVEVFESSSSESVWPKWSVPAQESIVTDIRWVNRYLFCTLGIACVLRLRDIRDPVATLEQNAEGLAGSRSMCILEPNVAAIGGDSGYLRVVRLYGTDNFRVKYPVRKVFVQKSSFRTMQSVSAPCEGASRSLIFTGGCEGIVHEVSFPRPLWLGFEECRISKTKAKQILRWGVEKDSREEYGAAFALKLNIGSSTDENILGSNEQANNTDQGGQQAHVRNPND-QRKTKVSGPSANERPLFGTAYHQSVVITRVDVNLRDRMIAVGIDGGIITWMPVEHETFESSLVQTI------VPSTKKRKR 492
            S P++L+       K LG L LF+S+ L G  GIAF GG +SVLKWHP  RG+LATAAH+S+Q  HE L+TYSG AHIQ+W +  TSA CLGV+ H+GDCTWD+KWRPG+     ++ WSGTFAAALGDGCILI  F ++++ + G  S    VRVLPCSKT+LR   +   +   RV+EWSLDG RLLVG+  G VEV+E+SS  S+WPKW++PAQESIV+D++W+N  LFCTLGI+CVLRLRDIRDPVAT+EQNAEGLAGS SM + EPNVA +GGD+GYLRVVRL GTDNF  K+PVR+V+VQ SSFRTMQS+S P    SR++++TGGCEGIVHE+SFPRPLW   ++C IS+T+  Q+LRW VEK   +       + L +G S  E+    N+  ++  +G    + R+ +  ++KTKV GP   ++PLFG +YHQ++V+TRVDV+++D MIAVGIDGGI+TW+P++HE+ +SSL + +       PS   +KR
Sbjct:   16 SHPLLLSHRDLPKEKVLGRLKLFESLPLPGKGGIAFTGGRVSVLKWHPTARGILATAAHKSEQLFHEVLRTYSGPAHIQIWRMSGTSAACLGVIPHNGDCTWDLKWRPGRVKAEPANRWSGTFAAALGDGCILISTFENVTQTSSGYDSLTGKVRVLPCSKTLLRVHKKPFLRRPVRVLEWSLDGTRLLVGSVNGFVEVYEASSDSSIWPKWTIPAQESIVSDMKWLNPSLFCTLGISCVLRLRDIRDPVATIEQNAEGLAGSLSMSMAEPNVAVVGGDTGYLRVVRLRGTDNFNAKHPVRRVYVQGSSFRTMQSISVPSPKGSRTILYTGGCEGIVHEISFPRPLWPDQDQCTISRTRVGQLLRWCVEKCPAKAKEKGDIMHLTLGGSF-EDAQDRNKGTSSDREGVDPRNGRSHSGFRKKTKVVGPHGTDKPLFGDSYHQAIVVTRVDVSIQDNMIAVGIDGGIVTWLPLDHESIDSSLAEDMDSEWVTKPSASSKKR 514          
BLAST of Gvermi6207.t1 vs. uniprot
Match: R7QHN9_CHOCR (ANAPC4_WD40 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHN9_CHOCR)

HSP 1 Score: 384 bits (985), Expect = 2.730e-117
Identity = 199/471 (42.25%), Postives = 279/471 (59.24%), Query Frame = 0
Query:   20 GSLSLFQSIILEGNAG-IAFAGGHISVLKWHPEVRGVLATAAHRSDQTTHEFLKTYSGAAHIQLWSVINTSAKCLGVVEHDGDCTWDVKWRPGKSVRSSSDAWSGTFAAALGDGCILICRFHDISRAACGTPS-SVRVLPCSKTVLRESTERAPQGLARVVEWSLDGKRLLVGTTTGAVEVFESSSSESVWPKWSVPAQESIVTDIRWVNRYLFCTLGIACVLRLRDIRDPVATLEQNAEGLAGSRSMCILEPNVAAIGGDSGYLRVVRLYGTDNFRVKYPVRKVFVQKSSFRTMQSV---SAPCEGASRSLIFTGGCEGIVHEVSFPRPLWLGFEECRISKTKAKQILRWG----VEKDSREEYGAAFALKLNIGSSTDENILGSNEQANNTDQGGQQAHV-----------RNPNDQRKTKVSGPSANERPLFGTAYHQSVVITRVDVNLRDRMIAVGIDGGIITWMPV 470
            G LSLF+S +L    G IA+ GG +S L +HP  +G+ A AAHRSDQ TH  LK Y+G+ HIQLW       +CLG+VEH+G+C WD+KWRP +S R  S  W GT AAALGDG +L+ +    ++ + G    +++ L  + T+LR +   A +   RVVEWS +G  L+VG   G++EV++++S +  WP+WS+P  ES+V D+RW++    C+LG++CVLRLRDIRDPV+TLEQN EGL+GS SM   EPNVA IGGD GYLRVVRL G D    +  V++V +Q  SFR M SV       +  S++L +TGG +G++HE  FPRP+W    EC I KT+  + LRW     +++   E       L+ ++ S   E   GS     N   GG                R P   R     G  A+    FG  Y +   +TR  +++   ++AVGI GG++TW+P+
Sbjct:   38 GRLSLFESRVLPSGRGRIAYVGGSVSALSFHPWAKGICAVAAHRSDQPTHRILKCYAGSGHIQLWRFAENDTRCLGLVEHNGECVWDLKWRPEQSQRDGSTGWEGTLAAALGDGTVLVSKIDSFTKVSHGAEKDAIKTLYPTSTLLRVNKSIASRSPVRVVEWSKEGNLLVVGCADGSIEVYDATSVDRTWPRWSIPGHESVVVDLRWLSETHLCSLGLSCVLRLRDIRDPVSTLEQNMEGLSGSMSMDAPEPNVAIIGGDYGYLRVVRLSGVDGMMPQRSVKRVRLQSGSFRDMCSVPISGQEADSCSQTLFYTGGADGMLHECKFPRPIWTSANECEIGKTQVGERLRWTQTTEIKEGGEEIRTLRLQLRNSLASGGQELSHGSLLDTENGGLGGTLVDTLLQETSTSSASRKPKRSRTVGREG-LADAYSRFGAQYKELAGVTRTSLSVPSDILAVGISGGLVTWVPL 507          
The following BLAST results are available for this feature:
BLAST of Gvermi6207.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IV81_9FLOR9.370e-19956.20Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHN9_CHOCR2.730e-11742.25ANAPC4_WD40 domain-containing protein n=1 Tax=Chon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 36..357
e-value: 1.2E-11
score: 45.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..431
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..425
NoneNo IPR availablePANTHERPTHR15052RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITcoord: 36..338
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 67..343

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3271748..3273292 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6207.t1Gvermi6207.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 3271748..3273292 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6207.t1 ID=Gvermi6207.t1|Name=Gvermi6207.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=515bp
MNSPPVILARAKGRDRKCLGSLSLFQSIILEGNAGIAFAGGHISVLKWHP
EVRGVLATAAHRSDQTTHEFLKTYSGAAHIQLWSVINTSAKCLGVVEHDG
DCTWDVKWRPGKSVRSSSDAWSGTFAAALGDGCILICRFHDISRAACGTP
SSVRVLPCSKTVLRESTERAPQGLARVVEWSLDGKRLLVGTTTGAVEVFE
SSSSESVWPKWSVPAQESIVTDIRWVNRYLFCTLGIACVLRLRDIRDPVA
TLEQNAEGLAGSRSMCILEPNVAAIGGDSGYLRVVRLYGTDNFRVKYPVR
KVFVQKSSFRTMQSVSAPCEGASRSLIFTGGCEGIVHEVSFPRPLWLGFE
ECRISKTKAKQILRWGVEKDSREEYGAAFALKLNIGSSTDENILGSNEQA
NNTDQGGQQAHVRNPNDQRKTKVSGPSANERPLFGTAYHQSVVITRVDVN
LRDRMIAVGIDGGIITWMPVEHETFESSLVQTIVPSTKKRKREIWDAQEA
RDVQHQIPSVPSET*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf