Gvermi6241.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6241.t1
Unique NameGvermi6241.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:3470860..3471528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMH262CT
PFAMsBromodomain,DUF3591
Max annot lvl2759|Eukaryota
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Evalue0.000648
EggNOG OGsCOG5179@1|root,KOG0008@2759|Eukaryota
Descriptionnegative regulation of protein autoubiquitination
COG categoryK
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6241Gvermi6241Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 3470860..3471528 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6241.t1.start1Gvermi6241.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 3470860..3470862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6241.t1.CDS1Gvermi6241.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 3470860..3471528 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6241.t1.exon1Gvermi6241.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 3470860..3471528 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6241.t1.stop1Gvermi6241.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 3471526..3471528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6241.t1Gvermi6241.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 3470860..3471528 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6241.t1 ID=Gvermi6241.t1|Name=Gvermi6241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=223bp
LEQIEDLVRDTDGCIVPGAKPMPTARLREGESAPPGVVAKNIAVPKDTGL
DLTAPVDAKTVPQHAQIMKNPIALNLTRQKCKTMAYESPQQFLADMDWWC
QTRSCSAGKPTFSGWCSTRSCCWTWRKRAEEERRGHQGGRGDGKGGEGGG
ESIGEQGQDEEERRRRRRRGGGEGKGAAKGAVDVMQVEDQSDDVVEVTTN
RAKTVDVINLDASRADSIVGGD*
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spliced messenger RNA

>Gvermi6241.t1 ID=Gvermi6241.t1|Name=Gvermi6241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=669bp|location=Sequence derived from alignment at ScGOVlb_1708:3470860..3471528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGAGCAGATCGAGGACTTGGTGCGCGATACAGATGGATGCATTGTGCC
CGGGGCCAAGCCAATGCCCACTGCGCGGCTGCGCGAAGGGGAGTCGGCGC
CGCCCGGCGTGGTAGCGAAGAACATTGCGGTGCCGAAGGATACGGGGCTG
GACCTGACTGCGCCCGTGGACGCGAAGACGGTGCCGCAGCACGCGCAGAT
CATGAAGAACCCCATTGCACTGAACCTGACGCGGCAGAAGTGCAAGACGA
TGGCGTACGAGAGCCCGCAGCAGTTCCTGGCGGATATGGATTGGTGGTGT
CAAACGCGCTCCTGTTCAGCCGGAAAGCCGACGTTCAGTGGGTGGTGCAG
CACGCGGAGCTGCTGCTGGACGTGGCGCAAGAGGGCTGAGGAGGAGAGGC
GAGGACATCAAGGCGGCCGAGGGGATGGTAAAGGTGGAGAAGGCGGAGGC
GAGAGCATCGGCGAGCAAGGTCAAGACGAAGAAGAAAGGCGGCGGCGACG
GAGGCGGGGTGGGGGTGAAGGCAAGGGCGCTGCGAAGGGCGCGGTGGACG
TGATGCAGGTGGAGGACCAGTCGGACGACGTGGTGGAGGTGACGACGAAT
AGGGCGAAGACGGTGGACGTGATCAACCTGGACGCGTCGCGAGCGGACTC
AATCGTGGGTGGTGACTAA
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protein sequence of Gvermi6241.t1

>Gvermi6241.t1 ID=Gvermi6241.t1|Name=Gvermi6241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=223bp
LEQIEDLVRDTDGCIVPGAKPMPTARLREGESAPPGVVAKNIAVPKDTGL
DLTAPVDAKTVPQHAQIMKNPIALNLTRQKCKTMAYESPQQFLADMDWWC
QTRSCSAGKPTFSGWCSTRSCCWTWRKRAEEERRGHQGGRGDGKGGEGGG
ESIGEQGQDEEERRRRRRRGGGEGKGAAKGAVDVMQVEDQSDDVVEVTTN
RAKTVDVINLDASRADSIVGGD*
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mRNA from alignment at ScGOVlb_1708:3470860..3471528+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6241.t1 ID=Gvermi6241.t1|Name=Gvermi6241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=669bp|location=Sequence derived from alignment at ScGOVlb_1708:3470860..3471528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGAGCAGATCGAGGACTTGGTGCGCGATACAGATGGATGCATTGTGCC
CGGGGCCAAGCCAATGCCCACTGCGCGGCTGCGCGAAGGGGAGTCGGCGC
CGCCCGGCGTGGTAGCGAAGAACATTGCGGTGCCGAAGGATACGGGGCTG
GACCTGACTGCGCCCGTGGACGCGAAGACGGTGCCGCAGCACGCGCAGAT
CATGAAGAACCCCATTGCACTGAACCTGACGCGGCAGAAGTGCAAGACGA
TGGCGTACGAGAGCCCGCAGCAGTTCCTGGCGGATATGGATTGGTGGTGT
CAAACGCGCTCCTGTTCAGCCGGAAAGCCGACGTTCAGTGGGTGGTGCAG
CACGCGGAGCTGCTGCTGGACGTGGCGCAAGAGGGCTGAGGAGGAGAGGC
GAGGACATCAAGGCGGCCGAGGGGATGGTAAAGGTGGAGAAGGCGGAGGC
GAGAGCATCGGCGAGCAAGGTCAAGACGAAGAAGAAAGGCGGCGGCGACG
GAGGCGGGGTGGGGGTGAAGGCAAGGGCGCTGCGAAGGGCGCGGTGGACG
TGATGCAGGTGGAGGACCAGTCGGACGACGTGGTGGAGGTGACGACGAAT
AGGGCGAAGACGGTGGACGTGATCAACCTGGACGCGTCGCGAGCGGACTC
AATCGTGGGTGGTGACTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1708:3470860..3471528+

>Gvermi6241.t1 ID=Gvermi6241.t1|Name=Gvermi6241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=669bp|location=Sequence derived from alignment at ScGOVlb_1708:3470860..3471528+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGGAGCAGATCGAGGACTTGGTGCGCGATACAGATGGATGCATTGTGCC
CGGGGCCAAGCCAATGCCCACTGCGCGGCTGCGCGAAGGGGAGTCGGCGC
CGCCCGGCGTGGTAGCGAAGAACATTGCGGTGCCGAAGGATACGGGGCTG
GACCTGACTGCGCCCGTGGACGCGAAGACGGTGCCGCAGCACGCGCAGAT
CATGAAGAACCCCATTGCACTGAACCTGACGCGGCAGAAGTGCAAGACGA
TGGCGTACGAGAGCCCGCAGCAGTTCCTGGCGGATATGGATTGGTGGTGT
CAAACGCGCTCCTGTTCAGCCGGAAAGCCGACGTTCAGTGGGTGGTGCAG
CACGCGGAGCTGCTGCTGGACGTGGCGCAAGAGGGCTGAGGAGGAGAGGC
GAGGACATCAAGGCGGCCGAGGGGATGGTAAAGGTGGAGAAGGCGGAGGC
GAGAGCATCGGCGAGCAAGGTCAAGACGAAGAAGAAAGGCGGCGGCGACG
GAGGCGGGGTGGGGGTGAAGGCAAGGGCGCTGCGAAGGGCGCGGTGGACG
TGATGCAGGTGGAGGACCAGTCGGACGACGTGGTGGAGGTGACGACGAAT
AGGGCGAAGACGGTGGACGTGATCAACCTGGACGCGTCGCGAGCGGACTC
AATCGTGGGTGGTGACTAA
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