Gvermi5963.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5963.t1
Unique NameGvermi5963.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length187
Homology
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BLAST of Gvermi5963.t1 vs. uniprot
Match: A0A2V3J237_9FLOR (SWI/SNF chromatin-remodeling complex subunit snf22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J237_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 2.660e-51
Identity = 89/187 (47.59%), Postives = 117/187 (62.57%), Query Frame = 0 
Query:    1 MIPLGGVCTPADTCETGTACSCTGFCSTIISIEIEALADDGVVPMMCGQELGPPTPDNIVEGSYTYNGVCDDLYYRVSNSGGIWEALITAVRDVNTNTWYPSVLPPDSGITAVVVKNPPNLDFFTDPAYDFSGWTPALQHTNILTQYAEYIAFQNDHGGI-IWTFDNIQAPRRDEGFTYYRVILPFC 186
             +PLGG CTP  TC TGT+CSCTGFC+T ++I+I+A  DD VVP++CG  LG  T      G++ Y G C+D+Y  VSNS G    +  ++ D  TNT Y + +   S +T  V+ NPPNLDFFTDPAYDFS W+P +  T ++   + YI F N+ GG  +WT  +      D G  YYRV LPFC
Sbjct:  248 FVPLGGACTPTSTCATGTSCSCTGFCATNVNIQIDAQGDDTVVPVVCGTNLGAVTTGFGDAGTWFYTGACNDVYLLVSNSRGGHTGVAASIVDQTTNTQYITRVD-GSDLTGTVLDNPPNLDFFTDPAYDFSIWSPVVLQTKLIND-SPYINFANNFGGATVWTHTDGHLGAGDLGSAYYRVQLPFC 432
The following BLAST results are available for this feature:
BLAST of Gvermi5963.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J237_9FLOR2.660e-5147.59SWI/SNF chromatin-remodeling complex subunit snf22... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1527832..1528392 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5963.t1Gvermi5963.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1527832..1528392 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5963.t1 ID=Gvermi5963.t1|Name=Gvermi5963.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=187bp
MIPLGGVCTPADTCETGTACSCTGFCSTIISIEIEALADDGVVPMMCGQE
LGPPTPDNIVEGSYTYNGVCDDLYYRVSNSGGIWEALITAVRDVNTNTWY
PSVLPPDSGITAVVVKNPPNLDFFTDPAYDFSGWTPALQHTNILTQYAEY
IAFQNDHGGIIWTFDNIQAPRRDEGFTYYRVILPFC*
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