Gvermi5802.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5802.t1
Unique NameGvermi5802.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length380
Homology
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A2V3J239_9FLOR (PAB-dependent poly(A)-specific ribonuclease subunit PAN2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J239_9FLOR)

HSP 1 Score: 322 bits (825), Expect = 1.140e-96
Identity = 161/282 (57.09%), Postives = 198/282 (70.21%), Query Frame = 0
Query:   98 RGNGYSNWWIDEDGDLHSSNSLSGMPHILDEIADTAMQEVKKIVQSLRIELTDDISVSEITILGSEEETALGYDAASGSFSDTGDIMAEYDLSFVIAQVPPTSQGVEGVSENDGTGSRNVVGHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVINDAAVDVREVIGEGNRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYGR 379
            +  GY  WW +  G+ +   S       L++IA+ AMQ  KK+V+S+RI+LT+ +SV++++  G+E    LGYDA      DT D+MAEYDLSFVIAQVP   Q     + N G  ++NV GHLVAYI VPR+   +      KT       + +DAEWWCFNDFVI+PC+GF+EVAAFH+ WK PC+IGYVRRDIN RV+M  N+   DVREVIGE N NAAVGLQPD E+P KGTVLALD EFVMVARD+ADIFGD  WQVVVP R ALA VS+IRGYG+
Sbjct:  782 KATGYDEWWFETGGNRNPVQSPRDQTRALEDIANEAMQGEKKLVESMRIDLTNGLSVTKLSDEGTEARADLGYDADGRDAKDTADLMAEYDLSFVIAQVPQAIQEGAEANGNGGMNAKNVEGHLVAYIRVPRSYRERGGSREDKTNSKAVSERNSDAEWWCFNDFVISPCEGFNEVAAFHRMWKRPCVIGYVRRDINSRVEMESNNTLADVREVIGEENCNAAVGLQPDEEVPEKGTVLALDCEFVMVARDEADIFGDGTWQVVVPARKALARVSVIRGYGK 1063          
BLAST of Gvermi5802.t1 vs. uniprot
Match: R7QR64_CHOCR (USP domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR64_CHOCR)

HSP 1 Score: 241 bits (614), Expect = 2.100e-67
Identity = 137/292 (46.92%), Postives = 181/292 (61.99%), Query Frame = 0
Query:  102 YSNWW--IDEDGDLHSSNSLSGMPHI----LDEIADTAMQEVKKIVQSLRIELTDDISVSEIT------ILGSEEETALGYD---AASGSFSDTGDIMAEYDLSFVIAQVPPTSQGVEGVSENDGTGSRNVVGHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVINDAAVDVREVIGEGNRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            Y  WW   D+  D++  +  +    +    L++ +  AM+   K++Q++ +++TD +SVSE+          +E E   GYD      GS +  GD  AEYDLSFVIA VP       G    D TG RN+ GHLV+YI VP+     E    +K EK +       A+WWCFNDFVI+PCDGF EVAAF K WK PC+IG+VRRD+ +RVK    +   +VREV+G  +RNAAVGL+P  E+PG+GT+L LD EFV+V RD A+IFGD   +VVVP RMALA VS+IRGYG
Sbjct:  787 YERWWDLSDKADDVYIRSRPTASQQLGIEALEKASKAAMERPHKLIQAMLVDVTDGVSVSELEGDDESWRTATEGEPCFGYDKNEVEMGSLNK-GDQSAEYDLSFVIAHVPQLEFEAGGSDRGD-TGRRNIGGHLVSYIRVPQ-----EYRDRQKVEKSQSKDMNLGADWWCFNDFVISPCDGFGEVAAFDKRWKKPCLIGFVRRDVWQRVKACKLEHNANVREVLGTEDRNAAVGLRPGEEVPGRGTLLGLDCEFVIVGRDVAEIFGDGTRKVVVPSRMALARVSVIRGYG 1071          
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A5J4YMM7_PORPP (PAB-dependent poly(A)-specific ribonuclease subunit PAN2 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMM7_PORPP)

HSP 1 Score: 125 bits (313), Expect = 1.650e-27
Identity = 92/253 (36.36%), Postives = 124/253 (49.01%), Query Frame = 0
Query:  131 DTAMQEVKKIVQSLRI--ELTDDISVSEITILGSEEETALGYDAASGSFSDTGDIMAEYDLSFVIAQVPPTSQGVEGVSENDGTGSRNVVGHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVINDAAVD--VREVIGE-GNRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            DTA++    +  +LRI  E T  + V E+T   SE   A           DTG  +AEYDL  VIA+V                  ++ V HLVAY+ V  +    +  P                 WW  NDF IA C   DEV  FH  WK PCI+ Y RRD++ R+ +   +  V+  +RE+    GNR   +  +   E+ GKG ++ALD EFVM+ R++ DI GD    VV P RMALA VS++RG G
Sbjct:  854 DTALRGGCALPMNLRIQVEATRGVEVEEMTRESSEIREAA---------EDTGLCVAEYDLCAVIARV------------------QSSVLHLVAYVDVQDSKHTADRSP----------------PWWVLNDFSIARCQSDDEVTRFHVQWKLPCILMYKRRDMHARLAIKRAEHVVEHELRELFTTAGNRAVPLSEREIPEVIGKGLLVALDCEFVMMEREQVDIRGDLSKTVVRPARMALARVSVLRGQG 1063          
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A0L8I679_OCTBM (USP domain-containing protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8I679_OCTBM)

HSP 1 Score: 87.0 bits (214), Expect = 8.680e-15
Identity = 50/146 (34.25%), Postives = 81/146 (55.48%), Query Frame = 0
Query:  239 GKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVI-----NDAAVDVREVIGEG-NRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            GKK  + K+   CT  +W+ FNDF I P +   E   F   WK PCII + R++IN+   + +     +D  +D   V+         + L PD EIP +G+++ALD+EFV + +++A++  D     + P  +ALA ++ +RGYG
Sbjct:  928 GKKYHQRKEKVTCT--QWYLFNDFSITPIE-ISEALHFDMDWKIPCIIYFTRKNINQYYDLTVQNPITSDVLLDQSGVVNPKITEKTFIPLTPD-EIPKRGSLVALDAEFVSLDQEQAELKSDGTRSTLKPSHLALARLTCVRGYG 1069          
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A6P7SQV9_OCTVU (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=3 Tax=Octopus TaxID=6643 RepID=A0A6P7SQV9_OCTVU)

HSP 1 Score: 84.3 bits (207), Expect = 6.760e-14
Identity = 49/146 (33.56%), Postives = 81/146 (55.48%), Query Frame = 0
Query:  239 GKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVI-----NDAAVDVREVIGEG-NRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            GKK  + K+   CT  +W+ FNDF I P +   E   F   WK PCII + R++IN+   + +     ++  +D   V+         + L PD EIP +G+++ALD+EFV + +++A++  D     + P  +ALA ++ +RGYG
Sbjct:  911 GKKYHQRKEKVTCT--QWYLFNDFSITPIE-MSEALHFDMDWKIPCIIYFTRKNINQYHDITVQNPITSEVLLDQSGVVNPKITEKTFIPLTPD-EIPKRGSLVALDAEFVSLDQEQAELKSDGTRSTLKPSHLALARLTCVRGYG 1052          
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A812D0M5_SEPPH (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812D0M5_SEPPH)

HSP 1 Score: 81.3 bits (199), Expect = 6.860e-13
Identity = 62/222 (27.93%), Postives = 104/222 (46.85%), Query Frame = 0
Query:  171 DAASGSFSDTGDIMAEY-----DLSFVIAQVPPTSQGVEGVS-ENDGTGSRNVVGHLVAYIHVPRASA--IKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVINDAAV-----DVREVIGEGNRNAA-VGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            DA+S SF     +   Y      LS    ++  T    E  S E D       +   VA+I   + +   +   + GK   + K+  K T ++W+ FNDF I P +   E   F   WK PCII +  +++N+   + + +        D   ++     N   V L P+ E P KG+++ALD+EFV + +++A++  D     + P  +ALA ++ +RGYG
Sbjct:  828 DASSDSFDADDGLRTSYVPVGLRLSLAGDEINVTQLTEESESHEADDLTKEYEIYATVAHIKDAKTAGNLVSSVKVGKTYHQRKE--KVTCSQWYLFNDFAITPIE-LSEALHFDMDWKVPCIIYFAHKNLNDYYDLSVQNPITSKVLFDESGIVNPKRTNQTFVPLSPE-EFPEKGSLVALDAEFVSLDQEQAELKSDGTRSTLKPSHLALARLTCVRGYG 1045          
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A8B7YC60_ACAPL (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7YC60_ACAPL)

HSP 1 Score: 79.3 bits (194), Expect = 2.870e-12
Identity = 50/166 (30.12%), Postives = 85/166 (51.20%), Query Frame = 0
Query:  219 GHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVIND----AAVDVREVIGEG--NRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            G+LVA++ V           GK   K K+    +  +W+ FNDF I   +   EV  F+  WK PC++ Y+R DIN    + IN       +     + +G  + +    L+ D E+P +G ++ +D+EFV + +++A+I  D     + P +M+ A +S+IRG G
Sbjct:  849 GNLVAHVQV-----------GKTYHKRKEG--VSHMQWYIFNDFSIESIEK-HEVVQFNMEWKVPCVLFYMREDINSHYDITINTPIDHTVLQPEASLSQGVLSHSTFTPLEVD-ELPKEGDIVGIDAEFVSLNQEEAEIRSDGTRSTIKPSQMSAARISVIRGQG 999          
BLAST of Gvermi5802.t1 vs. uniprot
Match: UPI0003F0DD5E (PAB-dependent poly(A)-specific ribonuclease subunit 2-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0DD5E)

HSP 1 Score: 79.0 bits (193), Expect = 3.780e-12
Identity = 67/261 (25.67%), Postives = 116/261 (44.44%), Query Frame = 0
Query:  128 EIADTAMQEVKK--IVQSLRIELTDDISVSEITILGSEEETALGYDAASGSFSDTGDIMAEYDLSFVIAQVPPTSQGVEGVSENDGTGSRNVVGHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMVINDAAVDVREVIGEGNRNAAVGLQPDV--------EIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            ++AD  ++E KK  +   L+++L+ D ++S   I   EE                G+    YDL   +  +     G                G+L A+I V           G    K K+    T + W+ FNDF IAP D   E   F+  WK PC++ ++RRD+NE  +  I  + +    ++ E +  A  G++  +        E+P  G ++ LD+EFV + +++A+I  D     + P +M+ A ++ +RG G
Sbjct:  720 DLADMGVEETKKSWVPYGLKMKLSSDRTLSVEDIF--EENVGA-----------VGEEYKIYDLHASVVHIQDIKTG----------------GNLAAHILV-----------GPTYHKRKEG--VTHSNWYLFNDFAIAPIDK-HEAVQFNLEWKVPCVLYFLRRDLNEDYECTIT-SPIKASSLLAEPSM-AKAGMKQHIAFTPLQASELPEPGDLVGLDAEFVTLNQEEAEIRSDGTRSTIKPSQMSAARITCVRGQG 935          
BLAST of Gvermi5802.t1 vs. uniprot
Match: A0A0H2S3Z6_9AGAM (PAN2-PAN3 deadenylation complex catalytic subunit PAN2 n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2S3Z6_9AGAM)

HSP 1 Score: 78.2 bits (191), Expect = 6.680e-12
Identity = 54/172 (31.40%), Postives = 88/172 (51.16%), Query Frame = 0
Query:  214 SRNVVGHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKM--VIN--DAAVDVREVIGEGNR-NAAVG--LQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            S+   GHLV+ + VP A    ++                 + W+ FNDFV+      D +  F   WK PCI+ Y R D+ ER+    + N  D ++  R++    NR N A+   L    E+PG GT++++D+EFV + +++ +   D   +V+ P R +LA VS++RG G
Sbjct:  757 SKEKFGHLVSIVKVPDAEGRSDSS----------------SPWFVFNDFVVTNVPERDAL-GFPGVWKVPCIVYYERVDMLERLNYNELPNKPDMSILYRDISISPNRDNTAIKHELLAQNELPGPGTLVSIDAEFVSMQQEETEYRSDGTKKVIRPARSSLARVSVLRGDG 911          
BLAST of Gvermi5802.t1 vs. uniprot
Match: UPI0014556178 (PAN2-PAN3 deadenylation complex catalytic subunit PAN2-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014556178)

HSP 1 Score: 77.8 bits (190), Expect = 9.040e-12
Identity = 48/168 (28.57%), Postives = 86/168 (51.19%), Query Frame = 0
Query:  219 GHLVAYIHVPRASAIKETEPGKKTEKLKDDGKCTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINER----VKMVINDAAVDVREVIGEG----NRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKADIFGDWKWQVVVPVRMALALVSIIRGYG 378
            G+L+A++ V           GK   K K+    T  +W+ FNDF I   +   EV  F+  WK PC++ Y+R DIN+     +K  I+   +     + +G    +    +G++   E+P +G ++ +D+EFV + +++A+I  D     + P +M+ A +S+ RG G
Sbjct:  849 GNLIAHVQV-----------GKTYHKRKEG--VTHMQWYIFNDFSIESIEK-HEVVQFNMEWKVPCVLYYMREDINDHYEITIKSPIDHTVLQPEASLSQGVLSHSTFTPLGME---ELPKEGDIIGIDAEFVSLNQEEAEIRSDGTRSTIKPSQMSAARISVTRGEG 999          
The following BLAST results are available for this feature:
BLAST of Gvermi5802.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J239_9FLOR1.140e-9657.09PAB-dependent poly(A)-specific ribonuclease subuni... [more]
R7QR64_CHOCR2.100e-6746.92USP domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A5J4YMM7_PORPP1.650e-2736.36PAB-dependent poly(A)-specific ribonuclease subuni... [more]
A0A0L8I679_OCTBM8.680e-1534.25USP domain-containing protein n=1 Tax=Octopus bima... [more]
A0A6P7SQV9_OCTVU6.760e-1433.56PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A812D0M5_SEPPH6.860e-1327.93PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
A0A8B7YC60_ACAPL2.870e-1230.12PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
UPI0003F0DD5E3.780e-1225.67PAB-dependent poly(A)-specific ribonuclease subuni... [more]
A0A0H2S3Z6_9AGAM6.680e-1231.40PAN2-PAN3 deadenylation complex catalytic subunit ... [more]
UPI00145561789.040e-1228.57PAN2-PAN3 deadenylation complex catalytic subunit ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.70.10Cysteine proteinasescoord: 129..300
e-value: 5.3E-12
score: 47.2
NoneNo IPR availablePANTHERPTHR15728DEADENYLATION COMPLEX CATALYTIC SUBUNIT PAN2coord: 177..378

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:49423..51670 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5802.t1Gvermi5802.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 49423..51670 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5802.t1 ID=Gvermi5802.t1|Name=Gvermi5802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=380bp
MQLLYISSVTKREAANPLCHEIHMDAALDAFTAMVVSSQGLLVLVNSEPP
TPSIHMSDFITSDIGAIIRKCAIPEFECEYLTEELFDSIMGQSHHRKRGN
GYSNWWIDEDGDLHSSNSLSGMPHILDEIADTAMQEVKKIVQSLRIELTD
DISVSEITILGSEEETALGYDAASGSFSDTGDIMAEYDLSFVIAQVPPTS
QGVEGVSENDGTGSRNVVGHLVAYIHVPRASAIKETEPGKKTEKLKDDGK
CTDAEWWCFNDFVIAPCDGFDEVAAFHKFWKTPCIIGYVRRDINERVKMV
INDAAVDVREVIGEGNRNAAVGLQPDVEIPGKGTVLALDSEFVMVARDKA
DIFGDWKWQVVVPVRMALALVSIIRGYGR*
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