Gvermi1932.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1932.t1
Unique NameGvermi1932.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2391536..2392654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704688.1
PFAMsPfkB
Max annot lvl2759|Eukaryota
Evalue3.07e-40
EggNOG OGsCOG0524@1|root,KOG2855@2759|Eukaryota
Descriptioncarbohydrate kinase activity
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1932Gvermi1932Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2391536..2392654 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1932.t1.stop1Gvermi1932.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2391536..2391538 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1932.t1.CDS1Gvermi1932.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2391536..2392654 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1932.t1.exon1Gvermi1932.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2391536..2392654 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1932.t1.start1Gvermi1932.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2392652..2392654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1932.t1Gvermi1932.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2391536..2392654 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1932.t1 ID=Gvermi1932.t1|Name=Gvermi1932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=373bp
MAEPRPPTVICCGLSCIDIELHNANVPISIESVTTFSHTTFTPGGSAPQT
SRALVSLCIPTALLTLIGDDPHGKTLRDLLLNTNVDVRGIQVSAEACTSL
AVLPLFVDGRRGCFVTLGANYIASTANLLPRSVIDTLFTKSLKVFHFGYP
HLMPRLQGPALGHLFEQVRRGAPHVLLTLDVNGADITETPETPILLPALR
YTAAIHANLDEACIITGLAAPSSSETMSASAIKPIVKWFVDKGAGTACVT
CGKDGVFIATRAKDNPDHRLSSHLECGAYTYRGAYRVTDDAQVNASGAGD
AFMAGIIAELAESAGKGGVARLADAGLVSALRRIDGKFCGENADMKELLS
LAQNRERIAPRESLRPSELAAK*
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spliced messenger RNA

>Gvermi1932.t1 ID=Gvermi1932.t1|Name=Gvermi1932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_1622:2391536..2392654- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGAGCCAAGGCCCCCCACGGTTATTTGCTGCGGTCTAAGTTGCAT
AGACATTGAGCTCCACAATGCCAACGTACCAATCTCAATAGAATCCGTGA
CCACCTTTTCCCATACTACGTTCACTCCCGGCGGGTCTGCACCGCAGACA
TCCCGCGCTCTGGTCTCTCTTTGTATTCCAACCGCTTTGTTAACTCTCAT
AGGGGACGACCCACACGGAAAAACGCTGCGTGATCTTCTGCTGAACACCA
ACGTGGATGTCAGGGGCATTCAGGTTAGTGCGGAAGCATGCACAAGTCTG
GCTGTTCTTCCATTATTCGTCGACGGCCGACGGGGCTGTTTCGTCACCCT
CGGTGCAAATTATATCGCCTCGACCGCCAACCTTTTACCGCGCTCCGTCA
TTGACACGTTATTCACAAAGTCTTTGAAGGTGTTTCATTTTGGATACCCG
CATCTGATGCCACGACTGCAGGGGCCTGCGTTGGGACATCTCTTCGAACA
AGTGCGACGAGGCGCGCCGCACGTCTTGCTCACACTCGACGTGAACGGTG
CGGATATCACTGAGACGCCTGAAACGCCGATATTGCTCCCAGCCTTGCGA
TACACGGCAGCAATCCACGCAAACCTAGACGAAGCGTGCATCATTACGGG
TCTCGCCGCACCGTCCAGTAGCGAAACCATGTCCGCATCCGCGATCAAGC
CCATCGTGAAATGGTTCGTTGACAAAGGGGCTGGCACCGCATGCGTAACT
TGCGGAAAGGATGGAGTGTTTATAGCGACGCGCGCAAAAGACAACCCTGA
TCATAGGTTGTCGTCCCACCTTGAGTGCGGGGCGTACACGTACAGGGGAG
CGTACAGGGTGACAGACGACGCACAGGTCAATGCAAGTGGTGCAGGCGAC
GCATTCATGGCTGGGATCATCGCCGAATTGGCCGAATCAGCAGGCAAAGG
CGGCGTTGCACGTCTCGCAGATGCCGGTCTGGTGAGCGCCTTGAGGCGTA
TAGACGGTAAGTTTTGCGGAGAAAATGCGGACATGAAGGAGCTGTTGTCG
CTGGCACAGAACAGAGAGCGCATTGCTCCAAGAGAAAGTCTGCGACCAAG
TGAATTAGCAGCAAAGTAG
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protein sequence of Gvermi1932.t1

>Gvermi1932.t1 ID=Gvermi1932.t1|Name=Gvermi1932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=373bp
MAEPRPPTVICCGLSCIDIELHNANVPISIESVTTFSHTTFTPGGSAPQT
SRALVSLCIPTALLTLIGDDPHGKTLRDLLLNTNVDVRGIQVSAEACTSL
AVLPLFVDGRRGCFVTLGANYIASTANLLPRSVIDTLFTKSLKVFHFGYP
HLMPRLQGPALGHLFEQVRRGAPHVLLTLDVNGADITETPETPILLPALR
YTAAIHANLDEACIITGLAAPSSSETMSASAIKPIVKWFVDKGAGTACVT
CGKDGVFIATRAKDNPDHRLSSHLECGAYTYRGAYRVTDDAQVNASGAGD
AFMAGIIAELAESAGKGGVARLADAGLVSALRRIDGKFCGENADMKELLS
LAQNRERIAPRESLRPSELAAK*
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mRNA from alignment at ScGOVlb_1622:2391536..2392654-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1932.t1 ID=Gvermi1932.t1|Name=Gvermi1932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at ScGOVlb_1622:2391536..2392654- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGAGCCAAGGCCCCCCACGGTTATTTGCTGCGGTCTAAGTTGCAT
AGACATTGAGCTCCACAATGCCAACGTACCAATCTCAATAGAATCCGTGA
CCACCTTTTCCCATACTACGTTCACTCCCGGCGGGTCTGCACCGCAGACA
TCCCGCGCTCTGGTCTCTCTTTGTATTCCAACCGCTTTGTTAACTCTCAT
AGGGGACGACCCACACGGAAAAACGCTGCGTGATCTTCTGCTGAACACCA
ACGTGGATGTCAGGGGCATTCAGGTTAGTGCGGAAGCATGCACAAGTCTG
GCTGTTCTTCCATTATTCGTCGACGGCCGACGGGGCTGTTTCGTCACCCT
CGGTGCAAATTATATCGCCTCGACCGCCAACCTTTTACCGCGCTCCGTCA
TTGACACGTTATTCACAAAGTCTTTGAAGGTGTTTCATTTTGGATACCCG
CATCTGATGCCACGACTGCAGGGGCCTGCGTTGGGACATCTCTTCGAACA
AGTGCGACGAGGCGCGCCGCACGTCTTGCTCACACTCGACGTGAACGGTG
CGGATATCACTGAGACGCCTGAAACGCCGATATTGCTCCCAGCCTTGCGA
TACACGGCAGCAATCCACGCAAACCTAGACGAAGCGTGCATCATTACGGG
TCTCGCCGCACCGTCCAGTAGCGAAACCATGTCCGCATCCGCGATCAAGC
CCATCGTGAAATGGTTCGTTGACAAAGGGGCTGGCACCGCATGCGTAACT
TGCGGAAAGGATGGAGTGTTTATAGCGACGCGCGCAAAAGACAACCCTGA
TCATAGGTTGTCGTCCCACCTTGAGTGCGGGGCGTACACGTACAGGGGAG
CGTACAGGGTGACAGACGACGCACAGGTCAATGCAAGTGGTGCAGGCGAC
GCATTCATGGCTGGGATCATCGCCGAATTGGCCGAATCAGCAGGCAAAGG
CGGCGTTGCACGTCTCGCAGATGCCGGTCTGGTGAGCGCCTTGAGGCGTA
TAGACGGTAAGTTTTGCGGAGAAAATGCGGACATGAAGGAGCTGTTGTCG
CTGGCACAGAACAGAGAGCGCATTGCTCCAAGAGAAAGTCTGCGACCAAG
TGAATTAGCAGCAAAGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2391536..2392654-

>Gvermi1932.t1 ID=Gvermi1932.t1|Name=Gvermi1932.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1119bp|location=Sequence derived from alignment at ScGOVlb_1622:2391536..2392654- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTGAGCCAAGGCCCCCCACGGTTATTTGCTGCGGTCTAAGTTGCAT
AGACATTGAGCTCCACAATGCCAACGTACCAATCTCAATAGAATCCGTGA
CCACCTTTTCCCATACTACGTTCACTCCCGGCGGGTCTGCACCGCAGACA
TCCCGCGCTCTGGTCTCTCTTTGTATTCCAACCGCTTTGTTAACTCTCAT
AGGGGACGACCCACACGGAAAAACGCTGCGTGATCTTCTGCTGAACACCA
ACGTGGATGTCAGGGGCATTCAGGTTAGTGCGGAAGCATGCACAAGTCTG
GCTGTTCTTCCATTATTCGTCGACGGCCGACGGGGCTGTTTCGTCACCCT
CGGTGCAAATTATATCGCCTCGACCGCCAACCTTTTACCGCGCTCCGTCA
TTGACACGTTATTCACAAAGTCTTTGAAGGTGTTTCATTTTGGATACCCG
CATCTGATGCCACGACTGCAGGGGCCTGCGTTGGGACATCTCTTCGAACA
AGTGCGACGAGGCGCGCCGCACGTCTTGCTCACACTCGACGTGAACGGTG
CGGATATCACTGAGACGCCTGAAACGCCGATATTGCTCCCAGCCTTGCGA
TACACGGCAGCAATCCACGCAAACCTAGACGAAGCGTGCATCATTACGGG
TCTCGCCGCACCGTCCAGTAGCGAAACCATGTCCGCATCCGCGATCAAGC
CCATCGTGAAATGGTTCGTTGACAAAGGGGCTGGCACCGCATGCGTAACT
TGCGGAAAGGATGGAGTGTTTATAGCGACGCGCGCAAAAGACAACCCTGA
TCATAGGTTGTCGTCCCACCTTGAGTGCGGGGCGTACACGTACAGGGGAG
CGTACAGGGTGACAGACGACGCACAGGTCAATGCAAGTGGTGCAGGCGAC
GCATTCATGGCTGGGATCATCGCCGAATTGGCCGAATCAGCAGGCAAAGG
CGGCGTTGCACGTCTCGCAGATGCCGGTCTGGTGAGCGCCTTGAGGCGTA
TAGACGGTAAGTTTTGCGGAGAAAATGCGGACATGAAGGAGCTGTTGTCG
CTGGCACAGAACAGAGAGCGCATTGCTCCAAGAGAAAGTCTGCGACCAAG
TGAATTAGCAGCAAAGTAG
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