Gvermi1854.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1854.t1
Unique NameGvermi1854.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:231057..232550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog148960.XP_006959363.1
PFAMsUCH
Max annot lvl4751|Fungi
KEGG koko:K11855
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0016787,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013,GO:0101005,GO:0140096
Evalue2.62e-35
EggNOG OGsKOG1865@1|root,KOG1865@2759|Eukaryota,38C2X@33154|Opisthokonta,3NYVR@4751|Fungi,3UZ0C@5204|Basidiomycota
EC3.4.19.12
DescriptionBelongs to the peptidase C19 family
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1854Gvermi1854Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 231057..232550 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1854.t1.stop1Gvermi1854.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 231057..231059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1854.t1.CDS1Gvermi1854.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 231057..232550 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1854.t1.exon1Gvermi1854.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 231057..232550 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1854.t1.start1Gvermi1854.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 232548..232550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1854.t1Gvermi1854.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 231057..232550 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1854.t1 ID=Gvermi1854.t1|Name=Gvermi1854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=498bp
MTSIVSSSSSEIFDQLTDPDTDSRELKSNESSEYSLSLLSKLQKPTRRTN
SDFETHTGKKLTTFISPKNIGSLPVTNAEKKGVENVKNIVHQCEPGFFNL
GNTCYLNAALQCLLHCRSFVNQIRDNGAHLSVEGHSQFCVLDQLHMLVEI
YFRDEAPETINLTPFVQNIRRICPLFVPMEQQDADELIQHLFQAIDLIQN
NGCADMATTKQKYVERIGHILRDSVIGNMTNTITCENCKYSSSTRTPFTK
LSIATQSVANMETSLKDLMKTEILEGQNAYNCPRCQTFSKATISKHIEKT
PNLLIIQLNRFNAEGKNNDFIQYPGLINLDPYCQEGMHSENYELKATLTH
SGPHMNFGHYTADVKCSDGHWCRTDDHKRSKITAAEAFERNAYMLFYQKM
NPMENNDDDEEKPEISGISRRIPDDSKKDEKNAGGSSFSSGEIKRVESIH
HLPDSSNEYVNIEEGKIDDYHAFETNANDADRKSASKKKLIKCCSVT*
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spliced messenger RNA

>Gvermi1854.t1 ID=Gvermi1854.t1|Name=Gvermi1854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at ScGOVlb_1622:231057..232550- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCCATAGTTTCATCCAGCTCGTCTGAAATCTTCGACCAACTGAC
CGACCCGGATACAGATAGTCGGGAACTTAAAAGCAATGAGAGCTCCGAGT
ATTCTCTTTCTCTTCTTTCAAAGCTGCAAAAGCCCACTAGGCGTACAAAC
TCTGATTTTGAAACACACACGGGAAAAAAGCTCACAACCTTTATCTCCCC
GAAAAATATTGGCAGCCTTCCAGTAACTAATGCAGAGAAGAAAGGAGTTG
AAAATGTCAAAAACATCGTTCACCAATGTGAGCCCGGGTTTTTCAATCTA
GGAAACACATGCTATCTTAATGCAGCCTTACAGTGTCTTCTTCATTGCAG
AAGCTTTGTGAATCAGATAAGAGATAATGGTGCGCACCTCAGTGTAGAAG
GTCACTCCCAGTTTTGTGTCCTTGATCAGCTGCATATGCTCGTAGAGATC
TACTTTCGAGATGAAGCACCCGAAACGATAAATCTGACTCCTTTTGTTCA
GAACATTCGGAGAATATGTCCGCTATTTGTGCCAATGGAGCAGCAAGACG
CCGACGAGCTCATCCAGCATCTCTTTCAGGCCATCGATTTGATTCAAAAT
AATGGATGTGCGGACATGGCTACAACAAAACAAAAATATGTTGAGAGAAT
TGGACACATTTTAAGAGACTCTGTCATTGGCAACATGACAAACACCATCA
CTTGCGAGAATTGCAAATATTCCTCGTCAACAAGAACGCCTTTTACCAAG
CTTTCTATTGCAACCCAATCTGTCGCAAACATGGAAACATCTTTGAAAGA
TCTCATGAAAACTGAAATTCTGGAAGGTCAAAATGCGTATAACTGTCCCC
GTTGCCAAACATTTTCGAAGGCTACCATCTCAAAGCACATTGAGAAGACG
CCGAACCTTTTGATCATACAGCTCAACAGATTTAACGCCGAAGGAAAAAA
CAATGATTTCATTCAATACCCGGGATTGATAAATCTTGATCCGTATTGCC
AAGAAGGAATGCATTCGGAAAACTACGAGCTGAAGGCCACCTTGACACAC
AGTGGACCTCACATGAATTTTGGACATTACACTGCTGATGTGAAGTGCTC
CGATGGACATTGGTGTCGAACTGATGATCATAAGCGTTCAAAAATAACTG
CAGCAGAGGCTTTCGAAAGGAATGCGTACATGCTTTTTTACCAAAAGATG
AACCCGATGGAAAATAATGATGATGATGAAGAAAAACCGGAGATCTCCGG
CATTTCCAGGAGAATTCCCGATGATTCAAAGAAAGACGAAAAAAATGCCG
GTGGGAGCTCTTTCAGTAGCGGTGAGATAAAGAGAGTAGAAAGCATCCAC
CATCTTCCTGACAGCAGCAATGAATATGTAAATATCGAGGAGGGGAAAAT
TGACGACTACCATGCATTTGAAACTAATGCAAATGATGCAGACAGGAAAT
CGGCTTCCAAAAAGAAGCTGATTAAGTGCTGCTCCGTTACATAA
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protein sequence of Gvermi1854.t1

>Gvermi1854.t1 ID=Gvermi1854.t1|Name=Gvermi1854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=498bp
MTSIVSSSSSEIFDQLTDPDTDSRELKSNESSEYSLSLLSKLQKPTRRTN
SDFETHTGKKLTTFISPKNIGSLPVTNAEKKGVENVKNIVHQCEPGFFNL
GNTCYLNAALQCLLHCRSFVNQIRDNGAHLSVEGHSQFCVLDQLHMLVEI
YFRDEAPETINLTPFVQNIRRICPLFVPMEQQDADELIQHLFQAIDLIQN
NGCADMATTKQKYVERIGHILRDSVIGNMTNTITCENCKYSSSTRTPFTK
LSIATQSVANMETSLKDLMKTEILEGQNAYNCPRCQTFSKATISKHIEKT
PNLLIIQLNRFNAEGKNNDFIQYPGLINLDPYCQEGMHSENYELKATLTH
SGPHMNFGHYTADVKCSDGHWCRTDDHKRSKITAAEAFERNAYMLFYQKM
NPMENNDDDEEKPEISGISRRIPDDSKKDEKNAGGSSFSSGEIKRVESIH
HLPDSSNEYVNIEEGKIDDYHAFETNANDADRKSASKKKLIKCCSVT*
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mRNA from alignment at ScGOVlb_1622:231057..232550-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1854.t1 ID=Gvermi1854.t1|Name=Gvermi1854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at ScGOVlb_1622:231057..232550- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCCATAGTTTCATCCAGCTCGTCTGAAATCTTCGACCAACTGAC
CGACCCGGATACAGATAGTCGGGAACTTAAAAGCAATGAGAGCTCCGAGT
ATTCTCTTTCTCTTCTTTCAAAGCTGCAAAAGCCCACTAGGCGTACAAAC
TCTGATTTTGAAACACACACGGGAAAAAAGCTCACAACCTTTATCTCCCC
GAAAAATATTGGCAGCCTTCCAGTAACTAATGCAGAGAAGAAAGGAGTTG
AAAATGTCAAAAACATCGTTCACCAATGTGAGCCCGGGTTTTTCAATCTA
GGAAACACATGCTATCTTAATGCAGCCTTACAGTGTCTTCTTCATTGCAG
AAGCTTTGTGAATCAGATAAGAGATAATGGTGCGCACCTCAGTGTAGAAG
GTCACTCCCAGTTTTGTGTCCTTGATCAGCTGCATATGCTCGTAGAGATC
TACTTTCGAGATGAAGCACCCGAAACGATAAATCTGACTCCTTTTGTTCA
GAACATTCGGAGAATATGTCCGCTATTTGTGCCAATGGAGCAGCAAGACG
CCGACGAGCTCATCCAGCATCTCTTTCAGGCCATCGATTTGATTCAAAAT
AATGGATGTGCGGACATGGCTACAACAAAACAAAAATATGTTGAGAGAAT
TGGACACATTTTAAGAGACTCTGTCATTGGCAACATGACAAACACCATCA
CTTGCGAGAATTGCAAATATTCCTCGTCAACAAGAACGCCTTTTACCAAG
CTTTCTATTGCAACCCAATCTGTCGCAAACATGGAAACATCTTTGAAAGA
TCTCATGAAAACTGAAATTCTGGAAGGTCAAAATGCGTATAACTGTCCCC
GTTGCCAAACATTTTCGAAGGCTACCATCTCAAAGCACATTGAGAAGACG
CCGAACCTTTTGATCATACAGCTCAACAGATTTAACGCCGAAGGAAAAAA
CAATGATTTCATTCAATACCCGGGATTGATAAATCTTGATCCGTATTGCC
AAGAAGGAATGCATTCGGAAAACTACGAGCTGAAGGCCACCTTGACACAC
AGTGGACCTCACATGAATTTTGGACATTACACTGCTGATGTGAAGTGCTC
CGATGGACATTGGTGTCGAACTGATGATCATAAGCGTTCAAAAATAACTG
CAGCAGAGGCTTTCGAAAGGAATGCGTACATGCTTTTTTACCAAAAGATG
AACCCGATGGAAAATAATGATGATGATGAAGAAAAACCGGAGATCTCCGG
CATTTCCAGGAGAATTCCCGATGATTCAAAGAAAGACGAAAAAAATGCCG
GTGGGAGCTCTTTCAGTAGCGGTGAGATAAAGAGAGTAGAAAGCATCCAC
CATCTTCCTGACAGCAGCAATGAATATGTAAATATCGAGGAGGGGAAAAT
TGACGACTACCATGCATTTGAAACTAATGCAAATGATGCAGACAGGAAAT
CGGCTTCCAAAAAGAAGCTGATTAAGTGCTGCTCCGTTACATAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:231057..232550-

>Gvermi1854.t1 ID=Gvermi1854.t1|Name=Gvermi1854.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1494bp|location=Sequence derived from alignment at ScGOVlb_1622:231057..232550- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACATCCATAGTTTCATCCAGCTCGTCTGAAATCTTCGACCAACTGAC
CGACCCGGATACAGATAGTCGGGAACTTAAAAGCAATGAGAGCTCCGAGT
ATTCTCTTTCTCTTCTTTCAAAGCTGCAAAAGCCCACTAGGCGTACAAAC
TCTGATTTTGAAACACACACGGGAAAAAAGCTCACAACCTTTATCTCCCC
GAAAAATATTGGCAGCCTTCCAGTAACTAATGCAGAGAAGAAAGGAGTTG
AAAATGTCAAAAACATCGTTCACCAATGTGAGCCCGGGTTTTTCAATCTA
GGAAACACATGCTATCTTAATGCAGCCTTACAGTGTCTTCTTCATTGCAG
AAGCTTTGTGAATCAGATAAGAGATAATGGTGCGCACCTCAGTGTAGAAG
GTCACTCCCAGTTTTGTGTCCTTGATCAGCTGCATATGCTCGTAGAGATC
TACTTTCGAGATGAAGCACCCGAAACGATAAATCTGACTCCTTTTGTTCA
GAACATTCGGAGAATATGTCCGCTATTTGTGCCAATGGAGCAGCAAGACG
CCGACGAGCTCATCCAGCATCTCTTTCAGGCCATCGATTTGATTCAAAAT
AATGGATGTGCGGACATGGCTACAACAAAACAAAAATATGTTGAGAGAAT
TGGACACATTTTAAGAGACTCTGTCATTGGCAACATGACAAACACCATCA
CTTGCGAGAATTGCAAATATTCCTCGTCAACAAGAACGCCTTTTACCAAG
CTTTCTATTGCAACCCAATCTGTCGCAAACATGGAAACATCTTTGAAAGA
TCTCATGAAAACTGAAATTCTGGAAGGTCAAAATGCGTATAACTGTCCCC
GTTGCCAAACATTTTCGAAGGCTACCATCTCAAAGCACATTGAGAAGACG
CCGAACCTTTTGATCATACAGCTCAACAGATTTAACGCCGAAGGAAAAAA
CAATGATTTCATTCAATACCCGGGATTGATAAATCTTGATCCGTATTGCC
AAGAAGGAATGCATTCGGAAAACTACGAGCTGAAGGCCACCTTGACACAC
AGTGGACCTCACATGAATTTTGGACATTACACTGCTGATGTGAAGTGCTC
CGATGGACATTGGTGTCGAACTGATGATCATAAGCGTTCAAAAATAACTG
CAGCAGAGGCTTTCGAAAGGAATGCGTACATGCTTTTTTACCAAAAGATG
AACCCGATGGAAAATAATGATGATGATGAAGAAAAACCGGAGATCTCCGG
CATTTCCAGGAGAATTCCCGATGATTCAAAGAAAGACGAAAAAAATGCCG
GTGGGAGCTCTTTCAGTAGCGGTGAGATAAAGAGAGTAGAAAGCATCCAC
CATCTTCCTGACAGCAGCAATGAATATGTAAATATCGAGGAGGGGAAAAT
TGACGACTACCATGCATTTGAAACTAATGCAAATGATGCAGACAGGAAAT
CGGCTTCCAAAAAGAAGCTGATTAAGTGCTGCTCCGTTACATAA
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