Gvermi1983.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1983.t1
Unique NameGvermi1983.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length444
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2606587..2608086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA17G26240.2
PFAMsMyb_DNA-binding
Max annot lvl35493|Streptophyta
KEGG koko:K09420,ko:K09422,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
GOsGO:0000981,GO:0000988,GO:0000989,GO:0001067,GO:0001076,GO:0001101,GO:0001134,GO:0001135,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0003713,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006275,GO:0006355,GO:0006357,GO:0008150,GO:0008285,GO:0009605,GO:0009607,GO:0009608,GO:0009610,GO:0009620,GO:0009623,GO:0009719,GO:0009725,GO:0009751,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0014070,GO:0019219,GO:0019222,GO:0030154,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0032465,GO:0032502,GO:0032875,GO:0042127,GO:0042221,GO:0042493,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043565,GO:0044212,GO:0044424,GO:0044464,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0046677,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051302,GO:0051704,GO:0051707,GO:0051726,GO:0060255,GO:0065007,GO:0080090,GO:0090329,GO:0097159,GO:0140110,GO:1901181,GO:1901363,GO:1901700,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:2000112,GO:2000113,GO:2001023,GO:2001024,GO:2001038,GO:2001039,GO:2001141
Evalue4.1e-40
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,37PMK@33090|Viridiplantae,3G7Z4@35493|Streptophyta,4JMV5@91835|fabids
DescriptionMyb-related protein
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1983Gvermi1983Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2606587..2608086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1983.t1Gvermi1983.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2606587..2608086 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1983.t1.start1Gvermi1983.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2606587..2606589 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1983.t1.CDS1Gvermi1983.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2606587..2606965 +
Gvermi1983.t1.CDS2Gvermi1983.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2607075..2607204 +
Gvermi1983.t1.CDS3Gvermi1983.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2607264..2608086 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1983.t1.exon1Gvermi1983.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2606587..2606965 +
Gvermi1983.t1.exon2Gvermi1983.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2607075..2607204 +
Gvermi1983.t1.exon3Gvermi1983.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2607264..2608086 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1983.t1.intron1Gvermi1983.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 2606966..2607074 +
Gvermi1983.t1.intron2Gvermi1983.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 2607205..2607263 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1983.t1.stop1Gvermi1983.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2608084..2608086 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1983.t1 ID=Gvermi1983.t1|Name=Gvermi1983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp
MGRSENDTYARGPWTKDEDSMLISLVNAHGPRNWTNLASRMPSRSGKQCR
ERWLNHLNPNIKKGAWTSDEDEKLVSLHKTIGNRWSEISKHLPGRTDNAI
KNHWNSTIKRKIRPDGSGLITSPSSSKLRLRLGLSHLGPGKTYIERKKEA
VYSCGSRIYVTIAILVVSVEISTPARKRGFKSEEACANPDAPTRSAVRQT
PIQNEKFPAIVLGSSLNVLSPQSLALQHKQAPLTGNESQSSVTEPPSPSR
SQSAQLYSNLDESVNLSSADTGFQTISSWSPTISNGPCFDLDVQDDSAPD
TPNSARRRLLAEGDDKFDGRPSYKRQKSDTVCSLEDDPIPPFLFGSTVGD
YGLETSSLADLGFAFSLTDSDPMSVNHPSLHSINIGEDGSIKEVGFGSFD
DVSDELADHVNGEEFSNIYNSTNMSYPSLIASINPIAHPDYGF*
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spliced messenger RNA

>Gvermi1983.t1 ID=Gvermi1983.t1|Name=Gvermi1983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1332bp|location=Sequence derived from alignment at ScGOVlb_1622:2606587..2608086+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGCTCTGAAAACGACACATACGCTAGAGGTCCTTGGACAAAGGA
TGAAGACTCGATGCTCATCTCCCTCGTCAATGCTCACGGTCCGCGCAATT
GGACCAATCTAGCATCGCGAATGCCTAGTAGGTCAGGAAAGCAATGTCGC
GAACGTTGGCTGAACCACCTCAACCCAAACATTAAGAAGGGTGCGTGGAC
GTCGGACGAAGACGAAAAACTCGTATCCTTGCACAAGACTATAGGCAATC
GTTGGTCGGAGATATCAAAGCATCTCCCAGGTCGAACGGATAATGCTATC
AAGAATCATTGGAACTCCACTATAAAGCGCAAGATTCGCCCGGATGGTTC
CGGTTTGATAACCTCTCCAAGCTCTAGCAAACTTCGACTTCGTCTCGGTC
TCAGTCATCTCGGACCAGGCAAAACATACATCGAGAGAAAAAAAGAAGCG
GTTTACAGCTGTGGAAGTCGAATCTACGTCACAATAGCGATACTGGTAGT
ATCCGTCGAGATTTCAACTCCCGCTCGCAAGCGTGGTTTTAAATCAGAAG
AAGCATGCGCCAACCCGGACGCTCCGACTCGTTCCGCTGTTCGTCAGACC
CCGATACAAAATGAAAAGTTCCCCGCTATTGTCCTTGGTTCGTCCCTTAA
TGTACTATCGCCCCAATCTCTGGCGTTGCAACACAAACAAGCGCCATTGA
CTGGAAATGAAAGTCAGTCATCGGTTACAGAACCTCCCTCTCCATCCCGC
TCTCAATCAGCTCAGTTATATTCGAACCTCGACGAGTCTGTTAACTTATC
CTCTGCAGATACAGGATTTCAAACGATTTCCTCTTGGTCGCCAACTATTT
CGAACGGTCCGTGTTTCGATCTAGATGTGCAAGACGATTCTGCGCCGGAC
ACTCCGAACAGTGCTCGTCGTCGGCTTTTAGCTGAAGGAGATGACAAATT
TGACGGCCGCCCTTCTTATAAGCGTCAAAAGAGTGACACTGTGTGTTCGT
TGGAAGACGACCCGATTCCTCCATTCCTCTTTGGTAGCACAGTGGGCGAC
TATGGCCTGGAAACTTCGTCACTGGCAGATTTGGGCTTTGCGTTTTCACT
CACTGATAGTGACCCCATGTCCGTTAATCATCCCAGCCTGCATTCGATCA
ATATCGGTGAAGACGGTTCGATCAAGGAGGTAGGCTTTGGATCCTTTGAC
GATGTGTCTGATGAACTTGCTGACCATGTCAATGGTGAAGAATTTTCCAA
CATCTACAACAGCACCAACATGAGTTACCCATCTCTGATAGCTTCAATCA
ACCCGATAGCTCACCCAGATTATGGATTTTAA
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protein sequence of Gvermi1983.t1

>Gvermi1983.t1 ID=Gvermi1983.t1|Name=Gvermi1983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=444bp
MGRSENDTYARGPWTKDEDSMLISLVNAHGPRNWTNLASRMPSRSGKQCR
ERWLNHLNPNIKKGAWTSDEDEKLVSLHKTIGNRWSEISKHLPGRTDNAI
KNHWNSTIKRKIRPDGSGLITSPSSSKLRLRLGLSHLGPGKTYIERKKEA
VYSCGSRIYVTIAILVVSVEISTPARKRGFKSEEACANPDAPTRSAVRQT
PIQNEKFPAIVLGSSLNVLSPQSLALQHKQAPLTGNESQSSVTEPPSPSR
SQSAQLYSNLDESVNLSSADTGFQTISSWSPTISNGPCFDLDVQDDSAPD
TPNSARRRLLAEGDDKFDGRPSYKRQKSDTVCSLEDDPIPPFLFGSTVGD
YGLETSSLADLGFAFSLTDSDPMSVNHPSLHSINIGEDGSIKEVGFGSFD
DVSDELADHVNGEEFSNIYNSTNMSYPSLIASINPIAHPDYGF*
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mRNA from alignment at ScGOVlb_1622:2606587..2608086+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1983.t1 ID=Gvermi1983.t1|Name=Gvermi1983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at ScGOVlb_1622:2606587..2608086+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGCTCTGAAAACGACACATACGCTAGAGGTCCTTGGACAAAGGA
TGAAGACTCGATGCTCATCTCCCTCGTCAATGCTCACGGTCCGCGCAATT
GGACCAATCTAGCATCGCGAATGCCTAGTAGGTCAGGAAAGCAATGTCGC
GAACGTTGGCTGAACCACCTCAACCCAAACATTAAGAAGGGTGCGTGGAC
GTCGGACGAAGACGAAAAACTCGTATCCTTGCACAAGACTATAGGCAATC
GTTGGTCGGAGATATCAAAGCATCTCCCAGGTCGAACGGATAATGCTATC
AAGAATCATTGGAACTCCACTATAAAGCGCAAGATTCGCCCGGATGGTTC
CGGTTTGATAACCTCTCCAAGCTCTAGCAGTCGCCGTGTTTCTGTCCTTG
CGTCCACGCCCCcttctgcttccgcaccatccgccgcacctgccgccgct
tctgtatccgcatccttgtctgcttctgcttctgATAGAACTTCGACTTC
GTCTCGGTCTCAGTCATCTCGGACCAGGCAAAACATACATCGAGAGAAAA
AAAGAAGCGGTTTACAGCTGTGGAAGTCGAATCTACGTCACAATAGCGAT
ACTGGTAGTATCCGTCGAGTAAGAATTGGACCATCCAAAGCTGACTGTCC
CCGCTCCCCGCGCTCGACTATTCACAGGATTTCAACTCCCGCTCGCAAGC
GTGGTTTTAAATCAGAAGAAGCATGCGCCAACCCGGACGCTCCGACTCGT
TCCGCTGTTCGTCAGACCCCGATACAAAATGAAAAGTTCCCCGCTATTGT
CCTTGGTTCGTCCCTTAATGTACTATCGCCCCAATCTCTGGCGTTGCAAC
ACAAACAAGCGCCATTGACTGGAAATGAAAGTCAGTCATCGGTTACAGAA
CCTCCCTCTCCATCCCGCTCTCAATCAGCTCAGTTATATTCGAACCTCGA
CGAGTCTGTTAACTTATCCTCTGCAGATACAGGATTTCAAACGATTTCCT
CTTGGTCGCCAACTATTTCGAACGGTCCGTGTTTCGATCTAGATGTGCAA
GACGATTCTGCGCCGGACACTCCGAACAGTGCTCGTCGTCGGCTTTTAGC
TGAAGGAGATGACAAATTTGACGGCCGCCCTTCTTATAAGCGTCAAAAGA
GTGACACTGTGTGTTCGTTGGAAGACGACCCGATTCCTCCATTCCTCTTT
GGTAGCACAGTGGGCGACTATGGCCTGGAAACTTCGTCACTGGCAGATTT
GGGCTTTGCGTTTTCACTCACTGATAGTGACCCCATGTCCGTTAATCATC
CCAGCCTGCATTCGATCAATATCGGTGAAGACGGTTCGATCAAGGAGGTA
GGCTTTGGATCCTTTGACGATGTGTCTGATGAACTTGCTGACCATGTCAA
TGGTGAAGAATTTTCCAACATCTACAACAGCACCAACATGAGTTACCCAT
CTCTGATAGCTTCAATCAACCCGATAGCTCACCCAGATTATGGATTTTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2606587..2608086+

>Gvermi1983.t1 ID=Gvermi1983.t1|Name=Gvermi1983.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1332bp|location=Sequence derived from alignment at ScGOVlb_1622:2606587..2608086+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGGTCGCTCTGAAAACGACACATACGCTAGAGGTCCTTGGACAAAGGA
TGAAGACTCGATGCTCATCTCCCTCGTCAATGCTCACGGTCCGCGCAATT
GGACCAATCTAGCATCGCGAATGCCTAGTAGGTCAGGAAAGCAATGTCGC
GAACGTTGGCTGAACCACCTCAACCCAAACATTAAGAAGGGTGCGTGGAC
GTCGGACGAAGACGAAAAACTCGTATCCTTGCACAAGACTATAGGCAATC
GTTGGTCGGAGATATCAAAGCATCTCCCAGGTCGAACGGATAATGCTATC
AAGAATCATTGGAACTCCACTATAAAGCGCAAGATTCGCCCGGATGGTTC
CGGTTTGATAACCTCTCCAAGCTCTAGCAAACTTCGACTTCGTCTCGGTC
TCAGTCATCTCGGACCAGGCAAAACATACATCGAGAGAAAAAAAGAAGCG
GTTTACAGCTGTGGAAGTCGAATCTACGTCACAATAGCGATACTGGTAGT
ATCCGTCGAGATTTCAACTCCCGCTCGCAAGCGTGGTTTTAAATCAGAAG
AAGCATGCGCCAACCCGGACGCTCCGACTCGTTCCGCTGTTCGTCAGACC
CCGATACAAAATGAAAAGTTCCCCGCTATTGTCCTTGGTTCGTCCCTTAA
TGTACTATCGCCCCAATCTCTGGCGTTGCAACACAAACAAGCGCCATTGA
CTGGAAATGAAAGTCAGTCATCGGTTACAGAACCTCCCTCTCCATCCCGC
TCTCAATCAGCTCAGTTATATTCGAACCTCGACGAGTCTGTTAACTTATC
CTCTGCAGATACAGGATTTCAAACGATTTCCTCTTGGTCGCCAACTATTT
CGAACGGTCCGTGTTTCGATCTAGATGTGCAAGACGATTCTGCGCCGGAC
ACTCCGAACAGTGCTCGTCGTCGGCTTTTAGCTGAAGGAGATGACAAATT
TGACGGCCGCCCTTCTTATAAGCGTCAAAAGAGTGACACTGTGTGTTCGT
TGGAAGACGACCCGATTCCTCCATTCCTCTTTGGTAGCACAGTGGGCGAC
TATGGCCTGGAAACTTCGTCACTGGCAGATTTGGGCTTTGCGTTTTCACT
CACTGATAGTGACCCCATGTCCGTTAATCATCCCAGCCTGCATTCGATCA
ATATCGGTGAAGACGGTTCGATCAAGGAGGTAGGCTTTGGATCCTTTGAC
GATGTGTCTGATGAACTTGCTGACCATGTCAATGGTGAAGAATTTTCCAA
CATCTACAACAGCACCAACATGAGTTACCCATCTCTGATAGCTTCAATCA
ACCCGATAGCTCACCCAGATTATGGATTTTAA
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