Gvermi1995.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1995.t1
Unique NameGvermi1995.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length557
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2659305..2660975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1995Gvermi1995Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2659305..2660975 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1995.t1.start1Gvermi1995.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2659305..2659307 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1995.t1.CDS1Gvermi1995.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2659305..2660975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1995.t1.exon1Gvermi1995.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2659305..2660975 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1995.t1.stop1Gvermi1995.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2660973..2660975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1995.t1Gvermi1995.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2659305..2660975 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1995.t1 ID=Gvermi1995.t1|Name=Gvermi1995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=557bp
MPRASLSSRSRQPPRLQKRPHLPVGSLPTHEPHHPQFPYEYVGRYTSVYH
QPSMPHPALFNPKKRSSLLRQLLRTVPAPALLCSVALAFFVFGVLFSRNV
SAMFDPSSPQHFGLPTRRLSTARSVLNLTNVHHDDTVAEPHADIVRHDDS
SHVQQLPAAAADHHSHHEQSHPSPPEHSLHNQSHPSSHQSAPAPVHNPAA
DHNPPADCCVGMWRSWPISPQYDFSHLYQVADHLNFTNNTLLNYFHMHKT
GGVTTKYEVMVLIRRYENRIQLTKGGRPLTVIETCYQQNHTNPEDNRLES
TWHCDFGQVEAFAPQKLASIDMVMGHQYWEEGCEMYFGPIRDVKHFSIFR
HPLARKLSFFYHFFVRNLQRDENDVGKEEVISFLLGESMPDNDALTRDAG
PNYYASRMISDGVTGFVGHRYVIPTHKQEEAIATVLHKLRNKYAFVGLQL
QPEASQCMLQKMVQVFAHVHGLDKMYGTPKLAESKKRLNVGGYPWTPKKV
WAAMTPEQRQRYREVEKVDLAIYEHVVQRFKEDLKVFACEHRVHADQWGE
DQFDEL*
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spliced messenger RNA

>Gvermi1995.t1 ID=Gvermi1995.t1|Name=Gvermi1995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at ScGOVlb_1622:2659305..2660975+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGTGCGTCGCTCTCCAGCCGCTCGCGGCAGCCGCCGCGCCTTCA
AAAGCGTCCGCACCTTCCGGTGGGCTCGCTGCCAACTCATGAACCGCATC
ACCCTCAGTTTCCGTATGAGTACGTTGGTCGCTACACATCTGTCTATCAT
CAACCCAGTATGCCGCATCCCGCCCTTTTCAATCCAAAGAAGCGTTCCTC
CCTTCTGCGCCAGTTGTTGCGAACTGTGCCCGCCCCTGCCCTTCTTTGCA
GCGTTGCGCTGGCTTTCTTTGTGTTTGGCGTGTTGTTTTCGCGAAATGTC
TCCGCTATGTTTGACCCGTCTTCCCCGCAGCATTTTGGACTGCCCACCCG
CCGCCTGTCTACCGCCCGCTCCGTCCTCAACCTCACCAACGTGCACCACG
ACGACACGGTTGCCGAGCCTCACGCTGACATTGTTCGCCACGACGATAGT
TCCCACGTACAACAACTCCCCGCCGCCGCTGCCGACCATCACTCACATCA
TGAACAAAGCCACCCATCGCCGCCAGAGCATTCGCTTCACAACCAATCAC
ACCCTTCTTCCCATCAGTCCGCCCCGGCCCCGGTGCACAATCCTGCGGCT
GACCACAACCCTCCTGCGGACTGCTGTGTCGGCATGTGGAGGTCGTGGCC
CATATCACCTCAGTATGACTTTTCGCACCTGTATCAAGTTGCCGATCATC
TTAATTTCACAAATAACACCCTTCTAAACTACTTTCACATGCACAAGACG
GGCGGCGTGACGACCAAGTATGAAGTCATGGTTCTCATCCGCCGTTACGA
AAACAGGATTCAGCTCACCAAGGGGGGCCGTCCTCTCACCGTCATCGAAA
CATGTTACCAGCAAAACCACACTAATCCGGAGGACAATCGCCTGGAAAGC
ACTTGGCACTGTGACTTTGGCCAGGTTGAGGCTTTCGCCCCGCAAAAGCT
CGCCTCCATCGACATGGTCATGGGCCACCAATACTGGGAAGAAGGCTGTG
AGATGTACTTTGGTCCAATCCGTGACGTGAAGCATTTCTCCATCTTCCGT
CACCCGCTTGCCAGGAAGCTGAGCTTTTTCTACCACTTTTTTGTGCGCAA
CCTGCAGCGCGATGAGAATGATGTTGGAAAGGAAGAGGTTATTTCGTTTT
TGTTGGGAGAATCCATGCCTGACAATGACGCGCTCACGCGTGATGCGGGG
CCGAACTACTATGCGTCGCGAATGATTTCTGATGGCGTCACTGGCTTTGT
TGGCCATCGGTATGTCATTCCGACTCACAAGCAAGAGGAAGCCATTGCCA
CCGTGCTACACAAGTTGCGTAACAAGTACGCGTTTGTAGGTTTGCAGTTG
CAGCCGGAGGCATCGCAGTGCATGCTGCAGAAGATGGTTCAGGTGTTTGC
ACACGTGCACGGCTTGGATAAAATGTATGGCACACCGAAGCTGGCTGAAA
GTAAGAAACGGCTCAATGTTGGCGGCTACCCGTGGACACCTAAGAAAGTT
TGGGCTGCTATGACCCCTGAACAGCGTCAACGCTACCGTGAGGTGGAAAA
GGTTGACCTTGCAATCTACGAGCACGTTGTGCAGCGTTTCAAGGAAGATC
TCAAGGTGTTTGCGTGTGAACACCGCGTTCATGCCGACCAATGGGGCGAA
GATCAGTTTGACGAATTGTAG
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protein sequence of Gvermi1995.t1

>Gvermi1995.t1 ID=Gvermi1995.t1|Name=Gvermi1995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=557bp
MPRASLSSRSRQPPRLQKRPHLPVGSLPTHEPHHPQFPYEYVGRYTSVYH
QPSMPHPALFNPKKRSSLLRQLLRTVPAPALLCSVALAFFVFGVLFSRNV
SAMFDPSSPQHFGLPTRRLSTARSVLNLTNVHHDDTVAEPHADIVRHDDS
SHVQQLPAAAADHHSHHEQSHPSPPEHSLHNQSHPSSHQSAPAPVHNPAA
DHNPPADCCVGMWRSWPISPQYDFSHLYQVADHLNFTNNTLLNYFHMHKT
GGVTTKYEVMVLIRRYENRIQLTKGGRPLTVIETCYQQNHTNPEDNRLES
TWHCDFGQVEAFAPQKLASIDMVMGHQYWEEGCEMYFGPIRDVKHFSIFR
HPLARKLSFFYHFFVRNLQRDENDVGKEEVISFLLGESMPDNDALTRDAG
PNYYASRMISDGVTGFVGHRYVIPTHKQEEAIATVLHKLRNKYAFVGLQL
QPEASQCMLQKMVQVFAHVHGLDKMYGTPKLAESKKRLNVGGYPWTPKKV
WAAMTPEQRQRYREVEKVDLAIYEHVVQRFKEDLKVFACEHRVHADQWGE
DQFDEL*
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mRNA from alignment at ScGOVlb_1622:2659305..2660975+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1995.t1 ID=Gvermi1995.t1|Name=Gvermi1995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1671bp|location=Sequence derived from alignment at ScGOVlb_1622:2659305..2660975+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCGTGCGTCGCTCTCCAGCCGCTCGCGGCAGCCGCCGCGCCTTCA
AAAGCGTCCGCACCTTCCGGTGGGCTCGCTGCCAACTCATGAACCGCATC
ACCCTCAGTTTCCGTATGAGTACGTTGGTCGCTACACATCTGTCTATCAT
CAACCCAGTATGCCGCATCCCGCCCTTTTCAATCCAAAGAAGCGTTCCTC
CCTTCTGCGCCAGTTGTTGCGAACTGTGCCCGCCCCTGCCCTTCTTTGCA
GCGTTGCGCTGGCTTTCTTTGTGTTTGGCGTGTTGTTTTCGCGAAATGTC
TCCGCTATGTTTGACCCGTCTTCCCCGCAGCATTTTGGACTGCCCACCCG
CCGCCTGTCTACCGCCCGCTCCGTCCTCAACCTCACCAACGTGCACCACG
ACGACACGGTTGCCGAGCCTCACGCTGACATTGTTCGCCACGACGATAGT
TCCCACGTACAACAACTCCCCGCCGCCGCTGCCGACCATCACTCACATCA
TGAACAAAGCCACCCATCGCCGCCAGAGCATTCGCTTCACAACCAATCAC
ACCCTTCTTCCCATCAGTCCGCCCCGGCCCCGGTGCACAATCCTGCGGCT
GACCACAACCCTCCTGCGGACTGCTGTGTCGGCATGTGGAGGTCGTGGCC
CATATCACCTCAGTATGACTTTTCGCACCTGTATCAAGTTGCCGATCATC
TTAATTTCACAAATAACACCCTTCTAAACTACTTTCACATGCACAAGACG
GGCGGCGTGACGACCAAGTATGAAGTCATGGTTCTCATCCGCCGTTACGA
AAACAGGATTCAGCTCACCAAGGGGGGCCGTCCTCTCACCGTCATCGAAA
CATGTTACCAGCAAAACCACACTAATCCGGAGGACAATCGCCTGGAAAGC
ACTTGGCACTGTGACTTTGGCCAGGTTGAGGCTTTCGCCCCGCAAAAGCT
CGCCTCCATCGACATGGTCATGGGCCACCAATACTGGGAAGAAGGCTGTG
AGATGTACTTTGGTCCAATCCGTGACGTGAAGCATTTCTCCATCTTCCGT
CACCCGCTTGCCAGGAAGCTGAGCTTTTTCTACCACTTTTTTGTGCGCAA
CCTGCAGCGCGATGAGAATGATGTTGGAAAGGAAGAGGTTATTTCGTTTT
TGTTGGGAGAATCCATGCCTGACAATGACGCGCTCACGCGTGATGCGGGG
CCGAACTACTATGCGTCGCGAATGATTTCTGATGGCGTCACTGGCTTTGT
TGGCCATCGGTATGTCATTCCGACTCACAAGCAAGAGGAAGCCATTGCCA
CCGTGCTACACAAGTTGCGTAACAAGTACGCGTTTGTAGGTTTGCAGTTG
CAGCCGGAGGCATCGCAGTGCATGCTGCAGAAGATGGTTCAGGTGTTTGC
ACACGTGCACGGCTTGGATAAAATGTATGGCACACCGAAGCTGGCTGAAA
GTAAGAAACGGCTCAATGTTGGCGGCTACCCGTGGACACCTAAGAAAGTT
TGGGCTGCTATGACCCCTGAACAGCGTCAACGCTACCGTGAGGTGGAAAA
GGTTGACCTTGCAATCTACGAGCACGTTGTGCAGCGTTTCAAGGAAGATC
TCAAGGTGTTTGCGTGTGAACACCGCGTTCATGCCGACCAATGGGGCGAA
GATCAGTTTGACGAATTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2659305..2660975+

>Gvermi1995.t1 ID=Gvermi1995.t1|Name=Gvermi1995.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1671bp|location=Sequence derived from alignment at ScGOVlb_1622:2659305..2660975+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGCGTGCGTCGCTCTCCAGCCGCTCGCGGCAGCCGCCGCGCCTTCA
AAAGCGTCCGCACCTTCCGGTGGGCTCGCTGCCAACTCATGAACCGCATC
ACCCTCAGTTTCCGTATGAGTACGTTGGTCGCTACACATCTGTCTATCAT
CAACCCAGTATGCCGCATCCCGCCCTTTTCAATCCAAAGAAGCGTTCCTC
CCTTCTGCGCCAGTTGTTGCGAACTGTGCCCGCCCCTGCCCTTCTTTGCA
GCGTTGCGCTGGCTTTCTTTGTGTTTGGCGTGTTGTTTTCGCGAAATGTC
TCCGCTATGTTTGACCCGTCTTCCCCGCAGCATTTTGGACTGCCCACCCG
CCGCCTGTCTACCGCCCGCTCCGTCCTCAACCTCACCAACGTGCACCACG
ACGACACGGTTGCCGAGCCTCACGCTGACATTGTTCGCCACGACGATAGT
TCCCACGTACAACAACTCCCCGCCGCCGCTGCCGACCATCACTCACATCA
TGAACAAAGCCACCCATCGCCGCCAGAGCATTCGCTTCACAACCAATCAC
ACCCTTCTTCCCATCAGTCCGCCCCGGCCCCGGTGCACAATCCTGCGGCT
GACCACAACCCTCCTGCGGACTGCTGTGTCGGCATGTGGAGGTCGTGGCC
CATATCACCTCAGTATGACTTTTCGCACCTGTATCAAGTTGCCGATCATC
TTAATTTCACAAATAACACCCTTCTAAACTACTTTCACATGCACAAGACG
GGCGGCGTGACGACCAAGTATGAAGTCATGGTTCTCATCCGCCGTTACGA
AAACAGGATTCAGCTCACCAAGGGGGGCCGTCCTCTCACCGTCATCGAAA
CATGTTACCAGCAAAACCACACTAATCCGGAGGACAATCGCCTGGAAAGC
ACTTGGCACTGTGACTTTGGCCAGGTTGAGGCTTTCGCCCCGCAAAAGCT
CGCCTCCATCGACATGGTCATGGGCCACCAATACTGGGAAGAAGGCTGTG
AGATGTACTTTGGTCCAATCCGTGACGTGAAGCATTTCTCCATCTTCCGT
CACCCGCTTGCCAGGAAGCTGAGCTTTTTCTACCACTTTTTTGTGCGCAA
CCTGCAGCGCGATGAGAATGATGTTGGAAAGGAAGAGGTTATTTCGTTTT
TGTTGGGAGAATCCATGCCTGACAATGACGCGCTCACGCGTGATGCGGGG
CCGAACTACTATGCGTCGCGAATGATTTCTGATGGCGTCACTGGCTTTGT
TGGCCATCGGTATGTCATTCCGACTCACAAGCAAGAGGAAGCCATTGCCA
CCGTGCTACACAAGTTGCGTAACAAGTACGCGTTTGTAGGTTTGCAGTTG
CAGCCGGAGGCATCGCAGTGCATGCTGCAGAAGATGGTTCAGGTGTTTGC
ACACGTGCACGGCTTGGATAAAATGTATGGCACACCGAAGCTGGCTGAAA
GTAAGAAACGGCTCAATGTTGGCGGCTACCCGTGGACACCTAAGAAAGTT
TGGGCTGCTATGACCCCTGAACAGCGTCAACGCTACCGTGAGGTGGAAAA
GGTTGACCTTGCAATCTACGAGCACGTTGTGCAGCGTTTCAAGGAAGATC
TCAAGGTGTTTGCGTGTGAACACCGCGTTCATGCCGACCAATGGGGCGAA
GATCAGTTTGACGAATTGTAG
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