Gvermi7241.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi7241.t1
Unique NameGvermi7241.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length138
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_970contigScGOVlb_970:1..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog203122.Sde_0809
PFAMsDUF3426,zinc_ribbon_4,zinc_ribbon_5
Max annot lvl1236|Gammaproteobacteria
Evalue3.97e-13
EggNOG OGsCOG1273@1|root,COG1273@2|Bacteria,1MWCU@1224|Proteobacteria,1RYQ0@1236|Gammaproteobacteria,46705@72275|Alteromonadaceae
DescriptionProtein of unknown function (DUF3426)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi7241Gvermi7241Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_970 1..414 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7241.t1.CDS1Gvermi7241.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_970 1..414 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7241.t1.exon1Gvermi7241.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_970 1..414 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7241.t1.start1Gvermi7241.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_970 412..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi7241.t1Gvermi7241.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_970 1..414 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi7241.t1 ID=Gvermi7241.t1|Name=Gvermi7241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=138bp
MTDIITRCPSCSVSFRASPAQLQAANGQVRCGACLTIFDAYSNEVVEQNP
LEETQKPLPEKDDLMIFDEMDINSAEEQEQEQEQEQEQEQEQEQEQEQEQ
EQEQEQDNDDSTPIQSATAFTDPTTSDQEAESTFQDMV
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spliced messenger RNA

>Gvermi7241.t1 ID=Gvermi7241.t1|Name=Gvermi7241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_970:1..414- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGACATCATCACCCGATGTCCCAGCTGCTCGGTATCCTTCCGAGC
ATCGCCAGCCCAACTACAGGCAGCAAATGGCCAGGTTCGCTGTGGTGCAT
GCCTGACGATTTTTGATGCTTACAGCAATGAAGTCGTAGAACAAAATCCT
CTAGAAGAAACTCAAAAACCCTTACCAGAAAAAGACGACCTGATGATCTT
TGATGAGATGGATATCAATTCTGCCGAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAG
GAGCAGGAGCAGGAGCAGGATAATGATGACTCCACCCCAATTCAAAGTGC
CACAGCATTTACTGATCCAACTACCTCTGACCAAGAAGCAGAATCAACAT
TCCAGGATATGGTC
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protein sequence of Gvermi7241.t1

>Gvermi7241.t1 ID=Gvermi7241.t1|Name=Gvermi7241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=138bp
MTDIITRCPSCSVSFRASPAQLQAANGQVRCGACLTIFDAYSNEVVEQNP
LEETQKPLPEKDDLMIFDEMDINSAEEQEQEQEQEQEQEQEQEQEQEQEQ
EQEQEQDNDDSTPIQSATAFTDPTTSDQEAESTFQDMV
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mRNA from alignment at ScGOVlb_970:1..414-

Legend: CDSpolypeptideexonstart_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi7241.t1 ID=Gvermi7241.t1|Name=Gvermi7241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=414bp|location=Sequence derived from alignment at ScGOVlb_970:1..414- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGACATCATCACCCGATGTCCCAGCTGCTCGGTATCCTTCCGAGC
ATCGCCAGCCCAACTACAGGCAGCAAATGGCCAGGTTCGCTGTGGTGCAT
GCCTGACGATTTTTGATGCTTACAGCAATGAAGTCGTAGAACAAAATCCT
CTAGAAGAAACTCAAAAACCCTTACCAGAAAAAGACGACCTGATGATCTT
TGATGAGATGGATATCAATTCTGCCGAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAG
GAGCAGGAGCAGGAGCAGGATAATGATGACTCCACCCCAATTCAAAGTGC
CACAGCATTTACTGATCCAACTACCTCTGACCAAGAAGCAGAATCAACAT
TCCAGGATATGGTC
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Coding sequence (CDS) from alignment at ScGOVlb_970:1..414-

>Gvermi7241.t1 ID=Gvermi7241.t1|Name=Gvermi7241.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=414bp|location=Sequence derived from alignment at ScGOVlb_970:1..414- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTGACATCATCACCCGATGTCCCAGCTGCTCGGTATCCTTCCGAGC
ATCGCCAGCCCAACTACAGGCAGCAAATGGCCAGGTTCGCTGTGGTGCAT
GCCTGACGATTTTTGATGCTTACAGCAATGAAGTCGTAGAACAAAATCCT
CTAGAAGAAACTCAAAAACCCTTACCAGAAAAAGACGACCTGATGATCTT
TGATGAGATGGATATCAATTCTGCCGAGGAGCAGGAGCAGGAGCAGGAGC
AGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAGGAGCAG
GAGCAGGAGCAGGAGCAGGATAATGATGACTCCACCCCAATTCAAAGTGC
CACAGCATTTACTGATCCAACTACCTCTGACCAAGAAGCAGAATCAACAT
TCCAGGATATGGTC
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