Gvermi1900.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1900.t1
Unique NameGvermi1900.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length120
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:1870001..1870747 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1900Gvermi1900Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 1870001..1870747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1900.t1Gvermi1900.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 1870001..1870747 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1900.t1.stop1Gvermi1900.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 1870001..1870003 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1900.t1.CDS1Gvermi1900.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1870001..1870007 -
Gvermi1900.t1.CDS2Gvermi1900.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1870162..1870355 -
Gvermi1900.t1.CDS3Gvermi1900.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 1870589..1870747 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1900.t1.exon1Gvermi1900.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1870001..1870007 -
Gvermi1900.t1.exon2Gvermi1900.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1870162..1870355 -
Gvermi1900.t1.exon3Gvermi1900.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 1870589..1870747 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1900.t1.intron1Gvermi1900.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 1870008..1870161 -
Gvermi1900.t1.intron2Gvermi1900.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_1622 1870356..1870588 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1900.t1.start1Gvermi1900.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 1870745..1870747 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1900.t1 ID=Gvermi1900.t1|Name=Gvermi1900.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=120bp
MTYAPHRKTRDSIFRPQISIRAHSFTYRLFSTIDAWLFHSSLETTIYRLL
CSSTSAVDRRLVEKGCSNYSSSSQITASNLVHDPRSNSRMRICNQCSLVF
SRKVRYLYHLLKDHDITVT*
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spliced messenger RNA

>Gvermi1900.t1 ID=Gvermi1900.t1|Name=Gvermi1900.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=360bp|location=Sequence derived from alignment at ScGOVlb_1622:1870001..1870747- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTACGCGCCACATAGAAAGACACGCGACTCCATCTTCCGACCTCA
AATCAGCATTAGAGCTCACTCCTTCACTTACAGGCTCTTCTCGACGATTG
ACGCCTGGTTATTTCACTCTAGTCTCGAAACAACAATCTATAGACTCCTT
TGCAGCAGTACCTCTGCAGTTGACCGCCGCCTCGTCGAAAAAGGATGCTC
CAACTATTCCTCCTCATCGCAAATCACCGCCAGTAATCTTGTGCACGATC
CACGCTCCAACAGTCGAATGCGAATTTGTAACCAGTGCAGCCTCGTCTTC
TCGCGCAAGGTTCGCTACCTCTATCACCTTCTCAAAGATCACGACATAAC
AGTGACCTAA
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protein sequence of Gvermi1900.t1

>Gvermi1900.t1 ID=Gvermi1900.t1|Name=Gvermi1900.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=120bp
MTYAPHRKTRDSIFRPQISIRAHSFTYRLFSTIDAWLFHSSLETTIYRLL
CSSTSAVDRRLVEKGCSNYSSSSQITASNLVHDPRSNSRMRICNQCSLVF
SRKVRYLYHLLKDHDITVT*
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mRNA from alignment at ScGOVlb_1622:1870001..1870747-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1900.t1 ID=Gvermi1900.t1|Name=Gvermi1900.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=747bp|location=Sequence derived from alignment at ScGOVlb_1622:1870001..1870747- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTACGCGCCACATAGAAAGACACGCGACTCCATCTTCCGACCTCA
AATCAGCATTAGAGCTCACTCCTTCACTTACAGGCTCTTCTCGACGATTG
ACGCCTGGTTATTTCACTCTAGTCTCGAAACAACAATCTATAGACTCCTT
TGCAGCAGTGTACGTCCCCCAAATATTAGCACGACTCACGTCCCGCCTTT
TCGCCTCTCCCCTTCTACTGCATTTCTCTTTCTCCCTTTGCAAGCATGGC
ACATCGCATGCAGCTTCAGTTTCTGTGCTCCCCGGAGTCACTCACTCCCC
CCCCTGCAAACCCCCAAAATCACCGCAAACCAACTTCATTTGCATCTTCC
TCCGCCTCATCTGACATGTGCCCTGTGTCTAAATCCCTCAAGACCTCTGC
AGTTGACCGCCGCCTCGTCGAAAAAGGATGCTCCAACTATTCCTCCTCAT
CGCAAATCACCGCCAGTAATCTTGTGCACGATCCACGCTCCAACAGTCGA
ATGCGAATTTGTAACCAGTGCAGCCTCGTCTTCTCGCGCAAGGTTCGCTA
CCTCTATCACCTTCTCAAAGATCACGACATAACAGTGTACGAAGGGCGCT
CTATTTTACCCTGCACACAGTGCGAGAGCGCCTTCATACGCAATACTGAT
CGATCCAAACACGTTCAATGCGTGCACAAGCGCCTGCGGCCGTTTCCGTG
CCCATTGCCTAATTGCGATTCCTCCTTCTTCTTCTCAAAGGACCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:1870001..1870747-

>Gvermi1900.t1 ID=Gvermi1900.t1|Name=Gvermi1900.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=360bp|location=Sequence derived from alignment at ScGOVlb_1622:1870001..1870747- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACCTACGCGCCACATAGAAAGACACGCGACTCCATCTTCCGACCTCA
AATCAGCATTAGAGCTCACTCCTTCACTTACAGGCTCTTCTCGACGATTG
ACGCCTGGTTATTTCACTCTAGTCTCGAAACAACAATCTATAGACTCCTT
TGCAGCAGTACCTCTGCAGTTGACCGCCGCCTCGTCGAAAAAGGATGCTC
CAACTATTCCTCCTCATCGCAAATCACCGCCAGTAATCTTGTGCACGATC
CACGCTCCAACAGTCGAATGCGAATTTGTAACCAGTGCAGCCTCGTCTTC
TCGCGCAAGGTTCGCTACCTCTATCACCTTCTCAAAGATCACGACATAAC
AGTGACCTAA
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