Gvermi6518.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6518.t1
Unique NameGvermi6518.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length430
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:1215727..1217016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_006819587.1
PFAMsDEP,DUF547,Glutaredoxin
Max annot lvl33208|Metazoa
Evalue5.41e-40
EggNOG OGs28JT7@1|root,2QS72@2759|Eukaryota,38H0G@33154|Opisthokonta,3BGN4@33208|Metazoa,3CYUK@33213|Bilateria
DescriptionProtein of unknown function, DUF547
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6518Gvermi6518Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 1215727..1217016 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6518.t1.start1Gvermi6518.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 1215727..1215729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6518.t1.CDS1Gvermi6518.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 1215727..1217016 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6518.t1.exon1Gvermi6518.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 1215727..1217016 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6518.t1.stop1Gvermi6518.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 1217014..1217016 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6518.t1Gvermi6518.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 1215727..1217016 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6518.t1 ID=Gvermi6518.t1|Name=Gvermi6518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=430bp
MTPPPNSIPWRNSPPYVPPSPQSISDMSSTDFPSSKRPSDPSLQPTFTDL
IDVLDAMMQPPPHRLTTSRTKWDGYKAFAATGTQIIDWLVEHSFAYTTES
AAVLATKLVRISGLIPLYKVQTADQSFQPDARHKYAHRGLTMMSEHGLNV
SVAFVGKPRDICAVLSDLNAAFAQLCHTAVSVDGHHVEYSAIRASAPWRR
TLLLLAELVVCDDSTIQSASPSFKQASFYNLYNILIFHAKLVYGHPTDLL
KRSKFFNEAAYIIAGKKITSVELEHSVCRRTMAASDNRFEWVLAEKDPRM
HFILNCGAQSCPPLVPLEADNIDAQLKEATSAFIENNCDVNLTAKTVTLS
RLWKWFRPDFTPSSTSDDDLISWISQHASESKKKELAKLTASDYKIKFRV
YNWADNGDVSAKPDVRFMAIYDLSFANTV*
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spliced messenger RNA

>Gvermi6518.t1 ID=Gvermi6518.t1|Name=Gvermi6518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_88:1215727..1217016+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCCCCCGCCAAACAGCATTCCGTGGCGCAACTCCCCGCCGTACGT
CCCGCCCAGCCCGCAGTCCATCTCCGACATGAGCTCCACGGACTTTCCGT
CCTCAAAGCGCCCATCCGACCCGTCTTTGCAGCCCACGTTTACGGACCTC
ATCGACGTGCTCGATGCAATGATGCAGCCCCCACCCCACCGCCTCACCAC
CTCGCGCACCAAGTGGGACGGCTACAAAGCATTTGCCGCCACCGGCACCC
AAATCATCGACTGGCTCGTCGAACATTCCTTCGCGTACACCACGGAGTCG
GCCGCCGTGTTGGCCACAAAACTGGTCAGAATCAGCGGACTCATTCCACT
GTACAAGGTTCAAACGGCAGACCAGTCGTTCCAGCCAGACGCCAGGCACA
AGTATGCCCACAGAGGGCTCACCATGATGTCCGAGCACGGGCTCAACGTG
TCTGTCGCCTTCGTGGGGAAGCCCAGAGACATTTGTGCTGTGCTGTCCGA
TCTCAACGCCGCTTTTGCCCAGCTGTGCCACACAGCCGTATCCGTTGACG
GCCATCACGTCGAATACTCCGCCATTCGCGCCTCCGCGCCTTGGCGAAGA
ACGCTTCTGCTGCTAGCTGAACTTGTGGTCTGCGACGATTCCACCATCCA
GTCTGCATCTCCATCCTTTAAGCAGGCTTCCTTTTACAACTTGTACAATA
TTCTAATCTTTCACGCCAAACTTGTCTACGGACATCCGACAGACCTCCTC
AAACGAAGCAAATTCTTCAACGAAGCCGCGTACATCATTGCCGGAAAGAA
GATAACTTCCGTTGAGTTAGAGCACTCTGTGTGTAGAAGAACCATGGCTG
CCAGTGACAATCGCTTTGAATGGGTGCTCGCCGAAAAAGACCCTCGCATG
CATTTCATTCTCAACTGCGGAGCTCAATCTTGCCCGCCCCTGGTACCTCT
AGAAGCTGACAATATTGATGCTCAGCTGAAGGAAGCCACTTCAGCCTTCA
TTGAGAACAACTGTGACGTCAATCTCACTGCTAAAACAGTCACCCTAAGT
AGATTGTGGAAATGGTTTCGACCAGATTTTACACCGTCCTCGACGAGCGA
CGATGATCTCATTAGCTGGATTTCTCAACATGCAAGCGAGTCCAAGAAGA
AGGAACTCGCAAAGCTGACTGCGAGCGACTACAAAATCAAATTTAGAGTG
TACAATTGGGCTGACAACGGCGATGTGAGCGCCAAGCCTGACGTACGCTT
CATGGCAATCTATGACTTGAGTTTTGCAAACACCGTGTGA
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protein sequence of Gvermi6518.t1

>Gvermi6518.t1 ID=Gvermi6518.t1|Name=Gvermi6518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=430bp
MTPPPNSIPWRNSPPYVPPSPQSISDMSSTDFPSSKRPSDPSLQPTFTDL
IDVLDAMMQPPPHRLTTSRTKWDGYKAFAATGTQIIDWLVEHSFAYTTES
AAVLATKLVRISGLIPLYKVQTADQSFQPDARHKYAHRGLTMMSEHGLNV
SVAFVGKPRDICAVLSDLNAAFAQLCHTAVSVDGHHVEYSAIRASAPWRR
TLLLLAELVVCDDSTIQSASPSFKQASFYNLYNILIFHAKLVYGHPTDLL
KRSKFFNEAAYIIAGKKITSVELEHSVCRRTMAASDNRFEWVLAEKDPRM
HFILNCGAQSCPPLVPLEADNIDAQLKEATSAFIENNCDVNLTAKTVTLS
RLWKWFRPDFTPSSTSDDDLISWISQHASESKKKELAKLTASDYKIKFRV
YNWADNGDVSAKPDVRFMAIYDLSFANTV*
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mRNA from alignment at ScGOVlb_88:1215727..1217016+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6518.t1 ID=Gvermi6518.t1|Name=Gvermi6518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1290bp|location=Sequence derived from alignment at ScGOVlb_88:1215727..1217016+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCCCCCGCCAAACAGCATTCCGTGGCGCAACTCCCCGCCGTACGT
CCCGCCCAGCCCGCAGTCCATCTCCGACATGAGCTCCACGGACTTTCCGT
CCTCAAAGCGCCCATCCGACCCGTCTTTGCAGCCCACGTTTACGGACCTC
ATCGACGTGCTCGATGCAATGATGCAGCCCCCACCCCACCGCCTCACCAC
CTCGCGCACCAAGTGGGACGGCTACAAAGCATTTGCCGCCACCGGCACCC
AAATCATCGACTGGCTCGTCGAACATTCCTTCGCGTACACCACGGAGTCG
GCCGCCGTGTTGGCCACAAAACTGGTCAGAATCAGCGGACTCATTCCACT
GTACAAGGTTCAAACGGCAGACCAGTCGTTCCAGCCAGACGCCAGGCACA
AGTATGCCCACAGAGGGCTCACCATGATGTCCGAGCACGGGCTCAACGTG
TCTGTCGCCTTCGTGGGGAAGCCCAGAGACATTTGTGCTGTGCTGTCCGA
TCTCAACGCCGCTTTTGCCCAGCTGTGCCACACAGCCGTATCCGTTGACG
GCCATCACGTCGAATACTCCGCCATTCGCGCCTCCGCGCCTTGGCGAAGA
ACGCTTCTGCTGCTAGCTGAACTTGTGGTCTGCGACGATTCCACCATCCA
GTCTGCATCTCCATCCTTTAAGCAGGCTTCCTTTTACAACTTGTACAATA
TTCTAATCTTTCACGCCAAACTTGTCTACGGACATCCGACAGACCTCCTC
AAACGAAGCAAATTCTTCAACGAAGCCGCGTACATCATTGCCGGAAAGAA
GATAACTTCCGTTGAGTTAGAGCACTCTGTGTGTAGAAGAACCATGGCTG
CCAGTGACAATCGCTTTGAATGGGTGCTCGCCGAAAAAGACCCTCGCATG
CATTTCATTCTCAACTGCGGAGCTCAATCTTGCCCGCCCCTGGTACCTCT
AGAAGCTGACAATATTGATGCTCAGCTGAAGGAAGCCACTTCAGCCTTCA
TTGAGAACAACTGTGACGTCAATCTCACTGCTAAAACAGTCACCCTAAGT
AGATTGTGGAAATGGTTTCGACCAGATTTTACACCGTCCTCGACGAGCGA
CGATGATCTCATTAGCTGGATTTCTCAACATGCAAGCGAGTCCAAGAAGA
AGGAACTCGCAAAGCTGACTGCGAGCGACTACAAAATCAAATTTAGAGTG
TACAATTGGGCTGACAACGGCGATGTGAGCGCCAAGCCTGACGTACGCTT
CATGGCAATCTATGACTTGAGTTTTGCAAACACCGTGTGA
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Coding sequence (CDS) from alignment at ScGOVlb_88:1215727..1217016+

>Gvermi6518.t1 ID=Gvermi6518.t1|Name=Gvermi6518.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1290bp|location=Sequence derived from alignment at ScGOVlb_88:1215727..1217016+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACTCCCCCGCCAAACAGCATTCCGTGGCGCAACTCCCCGCCGTACGT
CCCGCCCAGCCCGCAGTCCATCTCCGACATGAGCTCCACGGACTTTCCGT
CCTCAAAGCGCCCATCCGACCCGTCTTTGCAGCCCACGTTTACGGACCTC
ATCGACGTGCTCGATGCAATGATGCAGCCCCCACCCCACCGCCTCACCAC
CTCGCGCACCAAGTGGGACGGCTACAAAGCATTTGCCGCCACCGGCACCC
AAATCATCGACTGGCTCGTCGAACATTCCTTCGCGTACACCACGGAGTCG
GCCGCCGTGTTGGCCACAAAACTGGTCAGAATCAGCGGACTCATTCCACT
GTACAAGGTTCAAACGGCAGACCAGTCGTTCCAGCCAGACGCCAGGCACA
AGTATGCCCACAGAGGGCTCACCATGATGTCCGAGCACGGGCTCAACGTG
TCTGTCGCCTTCGTGGGGAAGCCCAGAGACATTTGTGCTGTGCTGTCCGA
TCTCAACGCCGCTTTTGCCCAGCTGTGCCACACAGCCGTATCCGTTGACG
GCCATCACGTCGAATACTCCGCCATTCGCGCCTCCGCGCCTTGGCGAAGA
ACGCTTCTGCTGCTAGCTGAACTTGTGGTCTGCGACGATTCCACCATCCA
GTCTGCATCTCCATCCTTTAAGCAGGCTTCCTTTTACAACTTGTACAATA
TTCTAATCTTTCACGCCAAACTTGTCTACGGACATCCGACAGACCTCCTC
AAACGAAGCAAATTCTTCAACGAAGCCGCGTACATCATTGCCGGAAAGAA
GATAACTTCCGTTGAGTTAGAGCACTCTGTGTGTAGAAGAACCATGGCTG
CCAGTGACAATCGCTTTGAATGGGTGCTCGCCGAAAAAGACCCTCGCATG
CATTTCATTCTCAACTGCGGAGCTCAATCTTGCCCGCCCCTGGTACCTCT
AGAAGCTGACAATATTGATGCTCAGCTGAAGGAAGCCACTTCAGCCTTCA
TTGAGAACAACTGTGACGTCAATCTCACTGCTAAAACAGTCACCCTAAGT
AGATTGTGGAAATGGTTTCGACCAGATTTTACACCGTCCTCGACGAGCGA
CGATGATCTCATTAGCTGGATTTCTCAACATGCAAGCGAGTCCAAGAAGA
AGGAACTCGCAAAGCTGACTGCGAGCGACTACAAAATCAAATTTAGAGTG
TACAATTGGGCTGACAACGGCGATGTGAGCGCCAAGCCTGACGTACGCTT
CATGGCAATCTATGACTTGAGTTTTGCAAACACCGTGTGA
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