Gvermi6774.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6774.t1
Unique NameGvermi6774.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2254931..2255350 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6774Gvermi6774Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2254931..2255350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6774.t1Gvermi6774.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2254931..2255350 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6774.t1.start1Gvermi6774.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2254931..2254933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6774.t1.CDS1Gvermi6774.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2254931..2254967 +
Gvermi6774.t1.CDS2Gvermi6774.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2255073..2255350 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6774.t1.exon1Gvermi6774.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2254931..2254967 +
Gvermi6774.t1.exon2Gvermi6774.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2255073..2255350 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6774.t1.intron1Gvermi6774.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_88 2254968..2255072 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6774.t1.stop1Gvermi6774.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2255348..2255350 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6774.t1 ID=Gvermi6774.t1|Name=Gvermi6774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=105bp
MMQSPPTPKRKRTLQEMIENVPLAPMKVSAGRKRRLHILSDITRDIFRSE
FLDIESSAPEEAQKRDQKLSSATQARHVTFADPLTQEIPATRYQDGDADS
SSTL*
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spliced messenger RNA

>Gvermi6774.t1 ID=Gvermi6774.t1|Name=Gvermi6774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp|location=Sequence derived from alignment at ScGOVlb_88:2254931..2255350+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCAATCCCCTCCAACTCCAAAGCGTAAACGTACTCTCCAAGAGAT
GATCGAAAATGTTCCTCTCGCACCGATGAAGGTCAGTGCTGGGAGAAAGC
GAAGGCTGCATATTCTGTCGGACATAACCCGTGATATCTTCCGCTCCGAA
TTTCTTGACATCGAATCTAGCGCTCCGGAAGAAGCCCAAAAGAGGGACCA
GAAACTTTCTTCAGCAACACAAGCACGTCATGTCACCTTCGCAGATCCGC
TAACACAGGAAATACCAGCAACTCGCTATCAAGACGGAGATGCGGACTCT
TCTTCCACTCTGTAG
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protein sequence of Gvermi6774.t1

>Gvermi6774.t1 ID=Gvermi6774.t1|Name=Gvermi6774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=105bp
MMQSPPTPKRKRTLQEMIENVPLAPMKVSAGRKRRLHILSDITRDIFRSE
FLDIESSAPEEAQKRDQKLSSATQARHVTFADPLTQEIPATRYQDGDADS
SSTL*
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mRNA from alignment at ScGOVlb_88:2254931..2255350+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6774.t1 ID=Gvermi6774.t1|Name=Gvermi6774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=420bp|location=Sequence derived from alignment at ScGOVlb_88:2254931..2255350+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCAATCCCCTCCAACTCCAAAGCGTAAACGTAGTAAGTAACACCA
AGTACTTGTATTGCAGGCATGTTTCTAACTCTGAGTCAAATGTATTCCTC
CTCGTTTTTAACCTTTGGAAACCGTCTAACTTCGCTTCGCAGCTCTCCAA
GAGATGATCGAAAATGTTCCTCTCGCACCGATGAAGGTCAGTGCTGGGAG
AAAGCGAAGGCTGCATATTCTGTCGGACATAACCCGTGATATCTTCCGCT
CCGAATTTCTTGACATCGAATCTAGCGCTCCGGAAGAAGCCCAAAAGAGG
GACCAGAAACTTTCTTCAGCAACACAAGCACGTCATGTCACCTTCGCAGA
TCCGCTAACACAGGAAATACCAGCAACTCGCTATCAAGACGGAGATGCGG
ACTCTTCTTCCACTCTGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2254931..2255350+

>Gvermi6774.t1 ID=Gvermi6774.t1|Name=Gvermi6774.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=315bp|location=Sequence derived from alignment at ScGOVlb_88:2254931..2255350+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATGCAATCCCCTCCAACTCCAAAGCGTAAACGTACTCTCCAAGAGAT
GATCGAAAATGTTCCTCTCGCACCGATGAAGGTCAGTGCTGGGAGAAAGC
GAAGGCTGCATATTCTGTCGGACATAACCCGTGATATCTTCCGCTCCGAA
TTTCTTGACATCGAATCTAGCGCTCCGGAAGAAGCCCAAAAGAGGGACCA
GAAACTTTCTTCAGCAACACAAGCACGTCATGTCACCTTCGCAGATCCGC
TAACACAGGAAATACCAGCAACTCGCTATCAAGACGGAGATGCGGACTCT
TCTTCCACTCTGTAG
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