Gvermi6788.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6788.t1
Unique NameGvermi6788.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length106
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2288178..2288495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_001414-tr
PFAMsRVT_1,SCAN,gag-asp_proteas,rve,zf-CCHC,zf-H2C2
Max annot lvl33208|Metazoa
Evalue9.95e-25
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38F42@33154|Opisthokonta,3BA5H@33208|Metazoa,3CWAK@33213|Bilateria
DescriptionK02A2.6-like
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6788Gvermi6788Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2288178..2288495 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6788.t1.stop1Gvermi6788.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2288178..2288180 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6788.t1.CDS1Gvermi6788.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2288178..2288495 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6788.t1.exon1Gvermi6788.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2288178..2288495 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6788.t1.start1Gvermi6788.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2288493..2288495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6788.t1Gvermi6788.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2288178..2288495 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6788.t1 ID=Gvermi6788.t1|Name=Gvermi6788.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=106bp
MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQ
VEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYP
IPRMD*
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spliced messenger RNA

>Gvermi6788.t1 ID=Gvermi6788.t1|Name=Gvermi6788.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:2288178..2288495- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGTGAATTCACCCCCCTGTGGGACGGAACCCTGGGGAAGATTGG
GATCACCGAACACCGGATCGATTTACTACCGGATACTCGGCCAATCTCAA
AACCCCCTTACAGGGCCGACCCGACCGCTCGGGAAGAGGAGAAGGCTCAG
GTAGAAAAGTTGCTCCGAGCAGGAGTCATCGAGCCGGCACAATCTCCATG
GGCCTCGCCCGTGGTGCTCGCTCCCAAACCTGATGGGTCGTGGCGCTTTT
GCGTTGACTACCGCAAACTGAATGCAGCGACCGTGAAGGATGTTTACCCC
ATCCCACGGATGGACTAG
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protein sequence of Gvermi6788.t1

>Gvermi6788.t1 ID=Gvermi6788.t1|Name=Gvermi6788.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=106bp
MLREFTPLWDGTLGKIGITEHRIDLLPDTRPISKPPYRADPTAREEEKAQ
VEKLLRAGVIEPAQSPWASPVVLAPKPDGSWRFCVDYRKLNAATVKDVYP
IPRMD*
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mRNA from alignment at ScGOVlb_88:2288178..2288495-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6788.t1 ID=Gvermi6788.t1|Name=Gvermi6788.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:2288178..2288495- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTACGTGAATTCACCCCCCTGTGGGACGGAACCCTGGGGAAGATTGG
GATCACCGAACACCGGATCGATTTACTACCGGATACTCGGCCAATCTCAA
AACCCCCTTACAGGGCCGACCCGACCGCTCGGGAAGAGGAGAAGGCTCAG
GTAGAAAAGTTGCTCCGAGCAGGAGTCATCGAGCCGGCACAATCTCCATG
GGCCTCGCCCGTGGTGCTCGCTCCCAAACCTGATGGGTCGTGGCGCTTTT
GCGTTGACTACCGCAAACTGAATGCAGCGACCGTGAAGGATGTTTACCCC
ATCCCACGGATGGACTAG
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Coding sequence (CDS) from alignment at ScGOVlb_88:2288178..2288495-

>Gvermi6788.t1 ID=Gvermi6788.t1|Name=Gvermi6788.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=318bp|location=Sequence derived from alignment at ScGOVlb_88:2288178..2288495- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTTACGTGAATTCACCCCCCTGTGGGACGGAACCCTGGGGAAGATTGG
GATCACCGAACACCGGATCGATTTACTACCGGATACTCGGCCAATCTCAA
AACCCCCTTACAGGGCCGACCCGACCGCTCGGGAAGAGGAGAAGGCTCAG
GTAGAAAAGTTGCTCCGAGCAGGAGTCATCGAGCCGGCACAATCTCCATG
GGCCTCGCCCGTGGTGCTCGCTCCCAAACCTGATGGGTCGTGGCGCTTTT
GCGTTGACTACCGCAAACTGAATGCAGCGACCGTGAAGGATGTTTACCCC
ATCCCACGGATGGACTAG
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