Gvermi6789.t2 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi6789.t2
Unique Name	Gvermi6789.t2
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	736

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2304744..2306951 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6789	Gvermi6789	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_88 2304744..2306951 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6789.t2.start1	Gvermi6789.t2.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_88 2304744..2304746 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6789.t2.CDS1	Gvermi6789.t2.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_88 2304744..2306951 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6789.t2.exon1	Gvermi6789.t2.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_88 2304744..2306951 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6789.t2.stop1	Gvermi6789.t2.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_88 2306949..2306951 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi6789.t2	Gvermi6789.t2	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_88 2304744..2306951 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_88:2304744..2306951+
coding sequence from alignment at ScGOVlb_88:2304744..2306951+

mRNA sequence

>Gvermi6789.t2 ID=Gvermi6789.t2|Name=Gvermi6789.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=736bp
MITRPQLLQSVSNFVKQSTPAAKDVDVIKDFKAWYEHEYEIQKQRSRHTQ
AQLQNQVRHQPTSGQINRGSNVPLHSGSQTIRTSIAPQTVSTARGQVKQE
PQRSNIVRTAGKSIGAKPEPMRLVPGARAVVPKNNGGRAVSADNIGGRQF
PVNGVPRPPPMPTPASSNLMMHSSVTPQGRVNQVVASKFPDGRPNSLPHT
VAQKAVGSVPQVAGKSIGGKSLLHTNAIIQAKQKQLRRPPQKSVAKTTIR
TSPKGAGKGKSPAAYPFKTAVHPAAHAGAHVGAHVGAHVGAHTGAHAGVH
AGIRPGGNVQISFAPVQLQAQLPAKRILENNTSSSPSNTAKKVKTAPKVS
KTTTSKKKPSPAVANSLLSKGARPPILKPDQRNKGAKRPMPSGALPPAGP
TPMAPGNPNADVVQKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKR
QAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVR
ERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQ
VAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALE
KKRKESSSQRDALSGLVRDFDRRRRRASAKPLAPLKPLGKSGLPPLARRP
NSDGSGRSGLKPLGSLDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAAQVR
LRVTLMDCVFLFESERNTKKSSLLYKWYARLPNGK*

spliced messenger RNA

>Gvermi6789.t2 ID=Gvermi6789.t2|Name=Gvermi6789.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2208bp|location=Sequence derived from alignment at ScGOVlb_88:2304744..2306951+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCACACGCCCACAGCTTCTTCAATCTGTATCTAATTTTGTCAAGCA
AAGCACCCCTGCTGCAAAAGATGTGGATGTTATCAAAGATTTTAAGGCAT
GGTACGAACACGAATACGAGATTCAAAAGCAAAGAAGTCGTCATACTCAA
GCCCAATTACAAAACCAAGTTCGACATCAGCCGACATCCGGACAGATTAA
TCGCGGCAGTAATGTACCATTACATTCCGGAAGCCAAACAATACGCACGA
GTATAGCGCCTCAAACGGTATCGACTGCCAGAGGACAGGTAAAGCAAGAG
CCGCAGAGGTCCAATATAGTTCGCACAGCAGGGAAGAGCATTGGCGCAAA
GCCGGAGCCCATGCGCCTTGTCCCAGGAGCAAGAGCGGTTGTGCCAAAGA
ACAATGGAGGTAGAGCAGTGTCTGCCGATAACATTGGTGGTAGACAATTT
CCAGTGAATGGTGTGCCAAGACCACCCCCCATGCCAACTCCGGCTTCTTC
GAACCTTATGATGCATAGTTCAGTCACACCACAAGGCAGGGTGAATCAAG
TGGTAGCTTCGAAGTTTCCCGACGGCAGACCAAATAGTTTGCCGCATACT
GTTGCACAGAAAGCAGTCGGAAGTGTACCCCAAGTTGCAGGAAAGAGTAT
CGGGGGGAAAAGTTTATTGCATACTAATGCTATCATTCAAGCAAAGCAAA
AACAGCTCAGAAGGCCTCCGCAGAAGAGCGTCGCAAAGACAACTATTCGA
ACGTCGCCGAAGGGGGCAGGAAAGGGAAAATCCCCCGCTGCTTACCCTTT
TAAAACTGCAGTTCATCCTGCAGCTCACGCTGGAGCACATGTTGGAGCGC
ATGTTGGAGCGCATGTTGGAGCACACACTGGGGCACACGCTGGAGTTCAT
GCCGGAATTCGTCCCGGAGGAAATGTTCAGATATCTTTTGCACCTGTTCA
ACTTCAAGCGCAGCTTCCTGCCAAGCGAATTCTAGAAAATAACACATCCT
CATCCCCGTCGAATACAGCGAAGAAGGTGAAAACAGCCCCAAAAGTATCG
AAGACCACTACGAGCAAGAAGAAGCCGTCACCGGCTGTCGCAAATTCCTT
GTTGTCGAAGGGAGCAAGGCCCCCCATCTTGAAACCAGATCAGAGGAATA
AAGGTGCGAAGAGGCCTATGCCATCTGGAGCACTGCCGCCTGCTGGGCCT
ACGCCGATGGCGCCGGGAAATCCGAACGCAGATGTAGTGCAGAAAAAAGT
GCGTCGCCAAGTGGATTTGAAGGAAATCAACCTCGTTGACAACGTGGTGG
ATATTGAAGATGAGGAGGTAAAACTGAATGTGGACGCCAACGGAAAACGA
CAAGCAGTCGAGGAAGTGGTCCAATACAGTCCAGACATGATTGTTTCTGG
TCCTGTTCTCCGTAAGAAGATGCAGTCTATCGCCAAAAGACATGGAATTC
ATGAGAACGTTAACAAAGAAGCGATGGAAATTATGTCTCTTGCAGTTCGA
GAGCGTTTAGCATGCATATTAGAGTCGCTGAAGACGATAGCATCGGTGAG
GGTGGGTGCCGAAAAAGGACAATGGGGAAGAGTTGAAACGGGGTTGAATG
TACGCGAAAAGCTGAAAAGGGCTCGAGAGGATGAAGAGCGGGCACTTCAA
GTTGCCGCTGAAATGAGAGTGAGGCGACGTAAGGAACAAAGAGAGGCCGA
CGCAAGAAGAGTCGCGGGAGAGGCGGCCAAGAACGATAAGAGTGCAAGGG
ATTCGAGTGCAGCGGCGGAAGCTGAAAGAAAGGAAAAGCTTGCTCTCGAA
AAGAAAAGAAAGGAAAGTAGCAGTCAACGGGACGCCTTGTCTGGGTTAGT
TCGCGACTTCGACAGACGACGTCGCCGTGCATCAGCGAAACCGCTTGCTC
CGCTCAAGCCCCTCGGGAAATCTGGCTTGCCGCCGCTGGCCAGGCGCCCG
AATTCCGACGGCTCAGGAAGATCTGGCCTGAAACCATTAGGATCGCTCGA
CAGGCTTAAGGATTTGGGGCCATTGGTGAAGCTCGGCGGAAAGTCTAACA
GTCCTGCCCCTCGTGGACTTGGTAGAGACCCTGTGGCTGCACAAGTCAGA
CTACGCGTGACGCTTATGGACTGCGTGTTTTTGTTCGAATCGGAAAGGAA
CACTAAGAAGAGTTCTCTGCTGTACAAGTGGTACGCTCGGCTTCCCAACG
GGAAATGA

protein sequence of Gvermi6789.t2

>Gvermi6789.t2 ID=Gvermi6789.t2|Name=Gvermi6789.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=736bp
MITRPQLLQSVSNFVKQSTPAAKDVDVIKDFKAWYEHEYEIQKQRSRHTQ
AQLQNQVRHQPTSGQINRGSNVPLHSGSQTIRTSIAPQTVSTARGQVKQE
PQRSNIVRTAGKSIGAKPEPMRLVPGARAVVPKNNGGRAVSADNIGGRQF
PVNGVPRPPPMPTPASSNLMMHSSVTPQGRVNQVVASKFPDGRPNSLPHT
VAQKAVGSVPQVAGKSIGGKSLLHTNAIIQAKQKQLRRPPQKSVAKTTIR
TSPKGAGKGKSPAAYPFKTAVHPAAHAGAHVGAHVGAHVGAHTGAHAGVH
AGIRPGGNVQISFAPVQLQAQLPAKRILENNTSSSPSNTAKKVKTAPKVS
KTTTSKKKPSPAVANSLLSKGARPPILKPDQRNKGAKRPMPSGALPPAGP
TPMAPGNPNADVVQKKVRRQVDLKEINLVDNVVDIEDEEVKLNVDANGKR
QAVEEVVQYSPDMIVSGPVLRKKMQSIAKRHGIHENVNKEAMEIMSLAVR
ERLACILESLKTIASVRVGAEKGQWGRVETGLNVREKLKRAREDEERALQ
VAAEMRVRRRKEQREADARRVAGEAAKNDKSARDSSAAAEAERKEKLALE
KKRKESSSQRDALSGLVRDFDRRRRRASAKPLAPLKPLGKSGLPPLARRP
NSDGSGRSGLKPLGSLDRLKDLGPLVKLGGKSNSPAPRGLGRDPVAAQVR
LRVTLMDCVFLFESERNTKKSSLLYKWYARLPNGK*

mRNA from alignment at ScGOVlb_88:2304744..2306951+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi6789.t2 ID=Gvermi6789.t2|Name=Gvermi6789.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2208bp|location=Sequence derived from alignment at ScGOVlb_88:2304744..2306951+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCACACGCCCACAGCTTCTTCAATCTGTATCTAATTTTGTCAAGCA
AAGCACCCCTGCTGCAAAAGATGTGGATGTTATCAAAGATTTTAAGGCAT
GGTACGAACACGAATACGAGATTCAAAAGCAAAGAAGTCGTCATACTCAA
GCCCAATTACAAAACCAAGTTCGACATCAGCCGACATCCGGACAGATTAA
TCGCGGCAGTAATGTACCATTACATTCCGGAAGCCAAACAATACGCACGA
GTATAGCGCCTCAAACGGTATCGACTGCCAGAGGACAGGTAAAGCAAGAG
CCGCAGAGGTCCAATATAGTTCGCACAGCAGGGAAGAGCATTGGCGCAAA
GCCGGAGCCCATGCGCCTTGTCCCAGGAGCAAGAGCGGTTGTGCCAAAGA
ACAATGGAGGTAGAGCAGTGTCTGCCGATAACATTGGTGGTAGACAATTT
CCAGTGAATGGTGTGCCAAGACCACCCCCCATGCCAACTCCGGCTTCTTC
GAACCTTATGATGCATAGTTCAGTCACACCACAAGGCAGGGTGAATCAAG
TGGTAGCTTCGAAGTTTCCCGACGGCAGACCAAATAGTTTGCCGCATACT
GTTGCACAGAAAGCAGTCGGAAGTGTACCCCAAGTTGCAGGAAAGAGTAT
CGGGGGGAAAAGTTTATTGCATACTAATGCTATCATTCAAGCAAAGCAAA
AACAGCTCAGAAGGCCTCCGCAGAAGAGCGTCGCAAAGACAACTATTCGA
ACGTCGCCGAAGGGGGCAGGAAAGGGAAAATCCCCCGCTGCTTACCCTTT
TAAAACTGCAGTTCATCCTGCAGCTCACGCTGGAGCACATGTTGGAGCGC
ATGTTGGAGCGCATGTTGGAGCACACACTGGGGCACACGCTGGAGTTCAT
GCCGGAATTCGTCCCGGAGGAAATGTTCAGATATCTTTTGCACCTGTTCA
ACTTCAAGCGCAGCTTCCTGCCAAGCGAATTCTAGAAAATAACACATCCT
CATCCCCGTCGAATACAGCGAAGAAGGTGAAAACAGCCCCAAAAGTATCG
AAGACCACTACGAGCAAGAAGAAGCCGTCACCGGCTGTCGCAAATTCCTT
GTTGTCGAAGGGAGCAAGGCCCCCCATCTTGAAACCAGATCAGAGGAATA
AAGGTGCGAAGAGGCCTATGCCATCTGGAGCACTGCCGCCTGCTGGGCCT
ACGCCGATGGCGCCGGGAAATCCGAACGCAGATGTAGTGCAGAAAAAAGT
GCGTCGCCAAGTGGATTTGAAGGAAATCAACCTCGTTGACAACGTGGTGG
ATATTGAAGATGAGGAGGTAAAACTGAATGTGGACGCCAACGGAAAACGA
CAAGCAGTCGAGGAAGTGGTCCAATACAGTCCAGACATGATTGTTTCTGG
TCCTGTTCTCCGTAAGAAGATGCAGTCTATCGCCAAAAGACATGGAATTC
ATGAGAACGTTAACAAAGAAGCGATGGAAATTATGTCTCTTGCAGTTCGA
GAGCGTTTAGCATGCATATTAGAGTCGCTGAAGACGATAGCATCGGTGAG
GGTGGGTGCCGAAAAAGGACAATGGGGAAGAGTTGAAACGGGGTTGAATG
TACGCGAAAAGCTGAAAAGGGCTCGAGAGGATGAAGAGCGGGCACTTCAA
GTTGCCGCTGAAATGAGAGTGAGGCGACGTAAGGAACAAAGAGAGGCCGA
CGCAAGAAGAGTCGCGGGAGAGGCGGCCAAGAACGATAAGAGTGCAAGGG
ATTCGAGTGCAGCGGCGGAAGCTGAAAGAAAGGAAAAGCTTGCTCTCGAA
AAGAAAAGAAAGGAAAGTAGCAGTCAACGGGACGCCTTGTCTGGGTTAGT
TCGCGACTTCGACAGACGACGTCGCCGTGCATCAGCGAAACCGCTTGCTC
CGCTCAAGCCCCTCGGGAAATCTGGCTTGCCGCCGCTGGCCAGGCGCCCG
AATTCCGACGGCTCAGGAAGATCTGGCCTGAAACCATTAGGATCGCTCGA
CAGGCTTAAGGATTTGGGGCCATTGGTGAAGCTCGGCGGAAAGTCTAACA
GTCCTGCCCCTCGTGGACTTGGTAGAGACCCTGTGGCTGCACAAGTCAGA
CTACGCGTGACGCTTATGGACTGCGTGTTTTTGTTCGAATCGGAAAGGAA
CACTAAGAAGAGTTCTCTGCTGTACAAGTGGTACGCTCGGCTTCCCAACG
GGAAATGA

Coding sequence (CDS) from alignment at ScGOVlb_88:2304744..2306951+

>Gvermi6789.t2 ID=Gvermi6789.t2|Name=Gvermi6789.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2208bp|location=Sequence derived from alignment at ScGOVlb_88:2304744..2306951+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGATCACACGCCCACAGCTTCTTCAATCTGTATCTAATTTTGTCAAGCA
AAGCACCCCTGCTGCAAAAGATGTGGATGTTATCAAAGATTTTAAGGCAT
GGTACGAACACGAATACGAGATTCAAAAGCAAAGAAGTCGTCATACTCAA
GCCCAATTACAAAACCAAGTTCGACATCAGCCGACATCCGGACAGATTAA
TCGCGGCAGTAATGTACCATTACATTCCGGAAGCCAAACAATACGCACGA
GTATAGCGCCTCAAACGGTATCGACTGCCAGAGGACAGGTAAAGCAAGAG
CCGCAGAGGTCCAATATAGTTCGCACAGCAGGGAAGAGCATTGGCGCAAA
GCCGGAGCCCATGCGCCTTGTCCCAGGAGCAAGAGCGGTTGTGCCAAAGA
ACAATGGAGGTAGAGCAGTGTCTGCCGATAACATTGGTGGTAGACAATTT
CCAGTGAATGGTGTGCCAAGACCACCCCCCATGCCAACTCCGGCTTCTTC
GAACCTTATGATGCATAGTTCAGTCACACCACAAGGCAGGGTGAATCAAG
TGGTAGCTTCGAAGTTTCCCGACGGCAGACCAAATAGTTTGCCGCATACT
GTTGCACAGAAAGCAGTCGGAAGTGTACCCCAAGTTGCAGGAAAGAGTAT
CGGGGGGAAAAGTTTATTGCATACTAATGCTATCATTCAAGCAAAGCAAA
AACAGCTCAGAAGGCCTCCGCAGAAGAGCGTCGCAAAGACAACTATTCGA
ACGTCGCCGAAGGGGGCAGGAAAGGGAAAATCCCCCGCTGCTTACCCTTT
TAAAACTGCAGTTCATCCTGCAGCTCACGCTGGAGCACATGTTGGAGCGC
ATGTTGGAGCGCATGTTGGAGCACACACTGGGGCACACGCTGGAGTTCAT
GCCGGAATTCGTCCCGGAGGAAATGTTCAGATATCTTTTGCACCTGTTCA
ACTTCAAGCGCAGCTTCCTGCCAAGCGAATTCTAGAAAATAACACATCCT
CATCCCCGTCGAATACAGCGAAGAAGGTGAAAACAGCCCCAAAAGTATCG
AAGACCACTACGAGCAAGAAGAAGCCGTCACCGGCTGTCGCAAATTCCTT
GTTGTCGAAGGGAGCAAGGCCCCCCATCTTGAAACCAGATCAGAGGAATA
AAGGTGCGAAGAGGCCTATGCCATCTGGAGCACTGCCGCCTGCTGGGCCT
ACGCCGATGGCGCCGGGAAATCCGAACGCAGATGTAGTGCAGAAAAAAGT
GCGTCGCCAAGTGGATTTGAAGGAAATCAACCTCGTTGACAACGTGGTGG
ATATTGAAGATGAGGAGGTAAAACTGAATGTGGACGCCAACGGAAAACGA
CAAGCAGTCGAGGAAGTGGTCCAATACAGTCCAGACATGATTGTTTCTGG
TCCTGTTCTCCGTAAGAAGATGCAGTCTATCGCCAAAAGACATGGAATTC
ATGAGAACGTTAACAAAGAAGCGATGGAAATTATGTCTCTTGCAGTTCGA
GAGCGTTTAGCATGCATATTAGAGTCGCTGAAGACGATAGCATCGGTGAG
GGTGGGTGCCGAAAAAGGACAATGGGGAAGAGTTGAAACGGGGTTGAATG
TACGCGAAAAGCTGAAAAGGGCTCGAGAGGATGAAGAGCGGGCACTTCAA
GTTGCCGCTGAAATGAGAGTGAGGCGACGTAAGGAACAAAGAGAGGCCGA
CGCAAGAAGAGTCGCGGGAGAGGCGGCCAAGAACGATAAGAGTGCAAGGG
ATTCGAGTGCAGCGGCGGAAGCTGAAAGAAAGGAAAAGCTTGCTCTCGAA
AAGAAAAGAAAGGAAAGTAGCAGTCAACGGGACGCCTTGTCTGGGTTAGT
TCGCGACTTCGACAGACGACGTCGCCGTGCATCAGCGAAACCGCTTGCTC
CGCTCAAGCCCCTCGGGAAATCTGGCTTGCCGCCGCTGGCCAGGCGCCCG
AATTCCGACGGCTCAGGAAGATCTGGCCTGAAACCATTAGGATCGCTCGA
CAGGCTTAAGGATTTGGGGCCATTGGTGAAGCTCGGCGGAAAGTCTAACA
GTCCTGCCCCTCGTGGACTTGGTAGAGACCCTGTGGCTGCACAAGTCAGA
CTACGCGTGACGCTTATGGACTGCGTGTTTTTGTTCGAATCGGAAAGGAA
CACTAAGAAGAGTTCTCTGCTGTACAAGTGGTACGCTCGGCTTCCCAACG
GGAAATGA