Gvermi6775.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi6775.t1
Unique Name	Gvermi6775.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	355

Homology

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BLAST of Gvermi6775.t1 vs. uniprot
Match: R7Q204_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q204_CHOCR)

HSP 1 Score: 324 bits (831), Expect = 3.000e-106
Identity = 190/354 (53.67%), Postives = 236/354 (66.67%), Query Frame = 0

Query:    1 MYLNNIFEQVPG-----PDLDTIPDPN--VSASLLAVTDPSWTPAPQEDH----DXXXXXXXXXXXAEHKQHTPAGKRRKQELHRRHSKRYRDNLGELFTSLERLLPNVVPGCKLKTKSQIIANSVHAIKHLRSEVSTLEIQYVLSSPTNRTKWVEDIVGNAVCFQDVVDPFITLTLTMQGWKHSELWTRHEMNVSSDGAEAATPVSNATESVQHLHPSTPKKFFLKLLDATSSHDIGAA-LRASYKQLSDRARGHFTRVADCNLVGRVASSLAPEIIDIRDPNSSTIFLRARAAEECGLLICFAVPILVRGHVFAVVMFFDDHPRANISQDLNVIQDLASSLGNCYGASSVHA 342
            MYLN++F+Q+ G     P L T    +  + A L     P   P P  D     +XXXXXXXXXXX   K     GK+RKQELHRRHSKRYRDNLGELF +LE+LLP VVPGCKLKTKSQIIANSV A+K LR+EVS LE+Q+VLSSP NRTKWVED V  A CFQ V +PF+ L + +Q WKHSELW R+E+N+  DG ++  PV N T +V  L P + KKFFLKL    S HDI A+ +  +Y+  S  +        D ++VGR AS L+PE ID+RDP +   F R  AA +CG   CFA+P LVRGHVFA ++F+DD  R +   D+N+ QD+AS LGNCYGAS+  +
Sbjct:    1 MYLNHLFQQIDGDQTQPPPLQTPVTASHPLPAHLSPTVPPDSHPKPTNDEAEYDEXXXXXXXXXXXXXXKPQPIVGKKRKQELHRRHSKRYRDNLGELFQNLEQLLPKVVPGCKLKTKSQIIANSVQAVKRLRTEVSALEMQFVLSSPANRTKWVEDTVQAATCFQAVTEPFMRLLVGIQRWKHSELWCRYEVNLLPDGTDSGAPVINPTNTVHDLGPLSSKKFFLKLDRTVSVHDITASTVPEAYRMFSKISHMATFVNGDDSIVGRTASKLSPEWIDLRDPEACHGFKRGEAARQCGFTTCFALPFLVRGHVFASILFYDDQQRFDAGPDINIAQDIASCLGNCYGASAAQS 354

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BLAST of Gvermi6775.t1 vs. uniprot
Match: R7Q8M0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q8M0_CHOCR)

HSP 1 Score: 124 bits (311), Expect = 5.170e-31
Identity = 65/132 (49.24%), Postives = 85/132 (64.39%), Query Frame = 0

Query:  210 PKKFFLKLLDATSSHDIGAALRASYKQLSDRARGHFTRVADCN-LVGRVASSLAPEIIDIRDPNSSTIFLRARAAEECGLLICFAVPILVRGHVFAVVMFFDDHPRANISQDLNVIQDLASSLGNCYGASSV 340
            P+K FLKL    S HDI A+      ++  +     T V D N +VGR AS L+PE ID+RDP S   F R  AA +CG   CFA+P LVRGHVFA ++F+DD  R+++  D+N+ QD+AS LGNCYGAS+ 
Sbjct:   23 PRKSFLKLDITASVHDITASTIPKVFRMFSKISHMATFVNDDNSIVGRTASKLSPEWIDLRDPESCHGFKRGEAARQCGFTACFALPFLVRGHVFASILFYDDQQRSDVRPDINIAQDIASCLGNCYGASAA 154

The following BLAST results are available for this feature:

BLAST of Gvermi6775.t1 vs. uniprot

BLAST of Gvermi6775.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
R7Q204_CHOCR	3.000e-106	53.67	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]
R7Q8M0_CHOCR	5.170e-31	49.24	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029016	GAF-like domain superfamily	GENE3D	3.30.450.40		coord: 212..348 e-value: 1.1E-6 score: 30.5
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 58..141 e-value: 1.0E-6 score: 30.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 66..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..76
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 287..309
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 310..354
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..286
None	No IPR available	CDD	cd00083	bHLH_SF	coord: 78..123 e-value: 3.0202E-4 score: 35.9589
None	No IPR available	SUPERFAMILY	55781	GAF domain-like	coord: 248..332
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 68..121 score: 9.089333

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_88	contig	ScGOVlb_88:2255843..2256907 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi6775.t1	Gvermi6775.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_88 2255843..2256907 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi6775.t1 ID=Gvermi6775.t1|Name=Gvermi6775.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=355bp
MYLNNIFEQVPGPDLDTIPDPNVSASLLAVTDPSWTPAPQEDHDDDHDDE
DEDEDAEHKQHTPAGKRRKQELHRRHSKRYRDNLGELFTSLERLLPNVVP
GCKLKTKSQIIANSVHAIKHLRSEVSTLEIQYVLSSPTNRTKWVEDIVGN
AVCFQDVVDPFITLTLTMQGWKHSELWTRHEMNVSSDGAEAATPVSNATE
SVQHLHPSTPKKFFLKLLDATSSHDIGAALRASYKQLSDRARGHFTRVAD
CNLVGRVASSLAPEIIDIRDPNSSTIFLRARAAEECGLLICFAVPILVRG
HVFAVVMFFDDHPRANISQDLNVIQDLASSLGNCYGASSVHANREQADNK
SSSK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR029016	GAF-like_dom_sf
IPR036638	HLH_DNA-bd_sf
IPR011598	bHLH_dom