Gvermi6765.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi6765.t1
Unique NameGvermi6765.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length209
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2214881..2215507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog554065.XP_005848837.1
Preferred nameMRPS6
PFAMsRibosomal_S6
Max annot lvl3041|Chlorophyta
KEGG koko:K02990
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Evalue2.74e-10
EggNOG OGsCOG0360@1|root,KOG4708@2759|Eukaryota,37XEN@33090|Viridiplantae,34IFX@3041|Chlorophyta
Descriptionribosomal protein S6
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6765Gvermi6765Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_88 2214881..2215507 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6765.t1.start1Gvermi6765.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_88 2214881..2214883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6765.t1.CDS1Gvermi6765.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_88 2214881..2215507 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6765.t1.exon1Gvermi6765.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_88 2214881..2215507 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6765.t1.stop1Gvermi6765.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_88 2215505..2215507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi6765.t1Gvermi6765.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_88 2214881..2215507 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi6765.t1 ID=Gvermi6765.t1|Name=Gvermi6765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=209bp
MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAVVTRIRPLGATGNGP
RDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAI
RKPITDAAKPIPDVDQPPPSGGRVNPDDPEYALQKFLAEYERDFANKDKE
DQSKGEPAEIDEVPSKPPSHASGEVSEVVASLKAWSQSEKPKKDHSLSWL
SDLQRKPS*
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spliced messenger RNA

>Gvermi6765.t1 ID=Gvermi6765.t1|Name=Gvermi6765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_88:2214881..2215507+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTACTACGAAGTTCTCTGTCTGGCAAAAGGAAATTTAGCAAGGAA
GGAATTGGGCAGTCTACTTCACAAGACATGCCGCGCATTTATGGATAACG
GAGCAGTTGTGACAAGGATCAGGCCGCTAGGCGCCACAGGAAACGGACCA
CGAGATCTAGCCTACCGAATCAGAATCAATCAGGTGTCATACCACAAGGG
CTTCTTCGTAAATGTTTGCGCCTTCGCGTCGCCACAGACACTGGCCGAGG
TGAGCCGCCAGCTCAAGGTGGACGAAAGGGTTCTCCGACACCTAGCCATA
CGAAAGCCTATCACGGACGCCGCCAAGCCCATCCCAGACGTTGATCAACC
GCCACCTTCGGGAGGAAGGGTGAACCCCGATGACCCCGAGTATGCGCTGC
AAAAATTCTTGGCAGAGTACGAACGGGATTTCGCAAACAAAGACAAAGAG
GACCAAAGCAAAGGTGAACCTGCTGAAATAGATGAAGTTCCTTCTAAGCC
ACCATCGCACGCCTCCGGGGAGGTGAGTGAGGTGGTCGCGAGCCTCAAGG
CTTGGTCGCAATCGGAAAAGCCAAAGAAAGACCACAGTTTGAGCTGGCTC
TCTGATCTTCAAAGGAAACCATCATAA
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protein sequence of Gvermi6765.t1

>Gvermi6765.t1 ID=Gvermi6765.t1|Name=Gvermi6765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=209bp
MPYYEVLCLAKGNLARKELGSLLHKTCRAFMDNGAVVTRIRPLGATGNGP
RDLAYRIRINQVSYHKGFFVNVCAFASPQTLAEVSRQLKVDERVLRHLAI
RKPITDAAKPIPDVDQPPPSGGRVNPDDPEYALQKFLAEYERDFANKDKE
DQSKGEPAEIDEVPSKPPSHASGEVSEVVASLKAWSQSEKPKKDHSLSWL
SDLQRKPS*
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mRNA from alignment at ScGOVlb_88:2214881..2215507+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi6765.t1 ID=Gvermi6765.t1|Name=Gvermi6765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=627bp|location=Sequence derived from alignment at ScGOVlb_88:2214881..2215507+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTACTACGAAGTTCTCTGTCTGGCAAAAGGAAATTTAGCAAGGAA
GGAATTGGGCAGTCTACTTCACAAGACATGCCGCGCATTTATGGATAACG
GAGCAGTTGTGACAAGGATCAGGCCGCTAGGCGCCACAGGAAACGGACCA
CGAGATCTAGCCTACCGAATCAGAATCAATCAGGTGTCATACCACAAGGG
CTTCTTCGTAAATGTTTGCGCCTTCGCGTCGCCACAGACACTGGCCGAGG
TGAGCCGCCAGCTCAAGGTGGACGAAAGGGTTCTCCGACACCTAGCCATA
CGAAAGCCTATCACGGACGCCGCCAAGCCCATCCCAGACGTTGATCAACC
GCCACCTTCGGGAGGAAGGGTGAACCCCGATGACCCCGAGTATGCGCTGC
AAAAATTCTTGGCAGAGTACGAACGGGATTTCGCAAACAAAGACAAAGAG
GACCAAAGCAAAGGTGAACCTGCTGAAATAGATGAAGTTCCTTCTAAGCC
ACCATCGCACGCCTCCGGGGAGGTGAGTGAGGTGGTCGCGAGCCTCAAGG
CTTGGTCGCAATCGGAAAAGCCAAAGAAAGACCACAGTTTGAGCTGGCTC
TCTGATCTTCAAAGGAAACCATCATAA
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Coding sequence (CDS) from alignment at ScGOVlb_88:2214881..2215507+

>Gvermi6765.t1 ID=Gvermi6765.t1|Name=Gvermi6765.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=627bp|location=Sequence derived from alignment at ScGOVlb_88:2214881..2215507+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCCGTACTACGAAGTTCTCTGTCTGGCAAAAGGAAATTTAGCAAGGAA
GGAATTGGGCAGTCTACTTCACAAGACATGCCGCGCATTTATGGATAACG
GAGCAGTTGTGACAAGGATCAGGCCGCTAGGCGCCACAGGAAACGGACCA
CGAGATCTAGCCTACCGAATCAGAATCAATCAGGTGTCATACCACAAGGG
CTTCTTCGTAAATGTTTGCGCCTTCGCGTCGCCACAGACACTGGCCGAGG
TGAGCCGCCAGCTCAAGGTGGACGAAAGGGTTCTCCGACACCTAGCCATA
CGAAAGCCTATCACGGACGCCGCCAAGCCCATCCCAGACGTTGATCAACC
GCCACCTTCGGGAGGAAGGGTGAACCCCGATGACCCCGAGTATGCGCTGC
AAAAATTCTTGGCAGAGTACGAACGGGATTTCGCAAACAAAGACAAAGAG
GACCAAAGCAAAGGTGAACCTGCTGAAATAGATGAAGTTCCTTCTAAGCC
ACCATCGCACGCCTCCGGGGAGGTGAGTGAGGTGGTCGCGAGCCTCAAGG
CTTGGTCGCAATCGGAAAAGCCAAAGAAAGACCACAGTTTGAGCTGGCTC
TCTGATCTTCAAAGGAAACCATCATAA
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