Gvermi6760.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6760.t1
Unique NameGvermi6760.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length103
Homology
[Close]
BLAST of Gvermi6760.t1 vs. uniprot
Match: A0A2V3J6R9_9FLOR (HORMA domain-containing protein 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6R9_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 1.600e-11
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0 
Query:   38 ITPVQSKALVKNMLRAAFSSVAYIRNLFDKKNFEKTKIGTTAFYKIKDQCAGNVARYR 95
            +T  QS ALVKN+ RAAFSSVAYIRNLF+ KNF K KIG   ++KI D   G+   ++
Sbjct:   14 LTHTQSTALVKNVFRAAFSSVAYIRNLFEAKNFTKAKIGKAKYFKIHDDAEGDALVFK 71
The following BLAST results are available for this feature:
BLAST of Gvermi6760.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6R9_9FLOR1.600e-1156.90HORMA domain-containing protein 1 n=1 Tax=Gracilar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036570HORMA domain superfamilyGENE3D3.30.900.10HORMA domaincoord: 21..94
e-value: 1.1E-11
score: 46.3
IPR036570HORMA domain superfamilySUPERFAMILY56019The spindle assembly checkpoint protein mad2coord: 38..81
IPR003511HORMA domainPFAMPF02301HORMAcoord: 43..83
e-value: 1.7E-8
score: 34.3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..102
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_88contigScGOVlb_88:2172827..2175438 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6760.t1Gvermi6760.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_88 2172827..2175438 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6760.t1 ID=Gvermi6760.t1|Name=Gvermi6760.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=103bp
MALLAPAVANSASCSPHLHLLLLPSSPQQTETVASKTITPVQSKALVKNM
LRAAFSSVAYIRNLFDKKNFEKTKIGTTAFYKIKDQCAGNVARYRNSGEC
DL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036570HORMA_dom_sf
IPR003511HORMA_dom